Trimin1|353969|estExt_Genemark1.C_Ctg_2000024 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353969
Unique Name	Trimin1\|353969\|estExt_Genemark1.C_Ctg_2000024
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	324

Homology

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BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A835Z9K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K2_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 6.920e-174
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0

Query:    1 MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVCTRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPGAKXXXXXXXXXXXXXXXXXXXXXXXKEAISSSNSSSRPDSSQQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAQRVAEGHLGSERVLDAIVVYSCASQEARDAPADHVDAGSSSFEE 323
            MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVCTRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPGAKXXXXXXXXXXXXXXXXXXXXXXXKEAISSSNSSSRPDSSQQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAQRVAEGHLGSERVLDAIVVYSCASQEARDAPADHVDAGSSSFEE
Sbjct:    1 MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVCTRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPGAKXXXXXXXXXXXXXXXXXXXXXXXKEAISSSNSSSRPDSSQQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAQRVAEGHLGSERVLDAIVVYSCASQEARDAPADHVDAGSSSFEE 323

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BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A835YZC4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.920e-26
Identity = 71/104 (68.27%), Postives = 71/104 (68.27%), Query Frame = 0

Query:  142 QQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQ 245
            QQ R AYVQRAVEAA  AALDEVADCSLRSASGQRFLQQQRDICEAEAERQR HYINSYMQ                            QRAAIEFDRGVAQAQ
Sbjct:   13 QQSRAAYVQRAVEAARKAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRIHYINSYMQ----------------------------QRAAIEFDRGVAQAQ 88

[Close]

BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A835YRJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.320e-6
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 0

Query:  149 VQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEA---------------ERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQ 245
            V+ A +AA   ALD+VA+C LR ASGQRFLQQ R+I EA+A               E++RTH+IN+ M+                             RAA+EFDR  AQAQ
Sbjct:    9 VEEAGDAARKKALDDVAECELRRASGQRFLQQYREIVEAKAQQDYQATLARAQALAEKERTHFINNNME-----------------------------RAAVEFDREAAQAQ 91

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353969 vs. uniprot

BLAST of jgi.p|Trimin1|353969 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A835Z9K2_9STRA	6.920e-174	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YZC4_9STRA	1.920e-26	68.27	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
A0A835YRJ9_9STRA	3.320e-6	39.29	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 252..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 258..278

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_200	contig	Contig_200:205921..207460 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353969	mRNA_17197	Tribonema minus UTEX_B_3156	mRNA	Contig_200 205921..207537 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353969|estExt_Genemark1.C_Ctg_2000024 ID=Trimin1|353969|estExt_Genemark1.C_Ctg_2000024|Name=jgi.p|Trimin1|353969|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=324bp
MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVC
TRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPG
AKGKGGNRPRPISPQHDGEGIKEPGKEAISSSNSSSRPDSSQQPRDAYVQ
RAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSY
MQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLAQAQ
PAQAQQKQAQQKQAQQQQAQQQQEAQEAAQRVAEGHLGSERVLDAIVVYS
CASQEARDAPADHVDAGSSSFEE*