mRNA_17197 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353969
Unique NamemRNA_17197
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A835Z9K2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K2_9STRA)

HSP 1 Score: 493 bits (1270), Expect = 1.840e-173
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 3 
Query:   78 MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVCTRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPGAKXXXXXXXXXXXXXXXXXXXXXXXKEAISSSNSSSRPDSSQQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAQRVAEGHLGSERVLDAIVVYSCASQEARDAPADHVDAGSSSFEE 1046
            MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVCTRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPGAKXXXXXXXXXXXXXXXXXXXXXXXKEAISSSNSSSRPDSSQQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAQRVAEGHLGSERVLDAIVVYSCASQEARDAPADHVDAGSSSFEE
Sbjct:    1 MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVCTRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPGAKXXXXXXXXXXXXXXXXXXXXXXXKEAISSSNSSSRPDSSQQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAQRVAEGHLGSERVLDAIVVYSCASQEARDAPADHVDAGSSSFEE 323
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BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A835YZC4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC4_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.200e-26
Identity = 71/104 (68.27%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  501 QQPRDAYVQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQ 812
            QQ R AYVQRAVEAA  AALDEVADCSLRSASGQRFLQQQRDICEAEAERQR HYINSYMQ                            QRAAIEFDRGVAQAQ
Sbjct:   13 QQSRAAYVQRAVEAARKAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRIHYINSYMQ----------------------------QRAAIEFDRGVAQAQ 88
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BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A836CIB5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIB5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.220e-7
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = -1 
Query:  921 SLLKRAGAGVNVVSRSITCFLGGTTVYYNCVQHSLAAEVALSY 1049
            SLLKRAGAGV VV+RSI  FLG T V Y C QHSLAAEVALSY
Sbjct:  528 SLLKRAGAGVIVVNRSIIRFLGTTDVRYQCFQHSLAAEVALSY 570
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BLAST of jgi.p|Trimin1|353969 vs. uniprot
Match: A0A835YRJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.050e-6
Identity = 44/112 (39.29%), Postives = 56/112 (50.00%), Query Frame = 3 
Query:  522 VQRAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEA---------------ERQRTHYINSYMQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQ 812
            V+ A +AA   ALD+VA+C LR ASGQRFLQQ R+I EA+A               E++RTH+IN+ M+                             RAA+EFDR  AQAQ
Sbjct:    9 VEEAGDAARKKALDDVAECELRRASGQRFLQQYREIVEAKAQQDYQATLARAQALAEKERTHFINNNME-----------------------------RAAVEFDREAAQAQ 91
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353969 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z9K2_9STRA1.840e-173100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YZC4_9STRA3.200e-2668.27Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836CIB5_9STRA3.220e-779.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YRJ9_9STRA4.050e-639.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_200contigContig_200:205921..207537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353969|estExt_Genemark1.C_Ctg_2000024
Hectar predicted targeting categoryother localisation
TranscriptId354291
TrackFilteredModels1
ProteinId353969
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353969gene_17197Tribonema minus UTEX_B_3156 geneContig_200 205921..207537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353969Trimin1|353969|estExt_Genemark1.C_Ctg_2000024Tribonema minus UTEX_B_3156 polypeptideContig_200 205921..207460 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17197_2exon_17197_2Tribonema minus UTEX_B_3156 exonContig_200 205921..206681 -
exon_17197_1exon_17197_1Tribonema minus UTEX_B_3156 exonContig_200 207250..207537 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17197CDS_17197Tribonema minus UTEX_B_3156 CDSContig_200 207250..207460 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17197UTR5_17197Tribonema minus UTEX_B_3156 five_prime_UTRContig_200 207461..207537 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17197 ID=mRNA_17197|Name=jgi.p|Trimin1|353969|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1049bp|location=Sequence derived from alignment at Contig_200:205921..207537- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACAACTTTGCCGTTGCTTTCGTGATGATGAACAGGTCTTCACACTGCAC
ACAGACAAATGCAACCGCCCTTGCAACATGGCAGTGGCCGACTGCATCAT
GTGCACGCGCAAGATTGCGGAGAGGGAGCACGTGATGGCCGCTTTTGGTG
CACCATCCCGCCCTGTGCACGTTTCATGTGCCATAGCACCCATGGCGCTG
CTGGATCCAGACACTCAGAAGGTCTGCACCAGGGACTGCTTCAATGAGGT
GGAAGGAGGCCTCTGCATATATTGCCGCGGGAAGGAAGAGGCCATTAAGG
AGCCGGAGGGTAAGGGGAAGAAACGCCAGCGGCCCGTTGCACAGCAGCAC
GATGGAGAGGGCATCAAGGAGCCGGGCGCTAAGGGCAAGGGGGGAAACCG
GCCACGGCCCATTTCACCGCAGCACGATGGAGAGGGCATCAAGGAGCCGG
GAAAGGAGGCTATCAGCAGTAGCAACAGCTCGTCACGACCTGATTCATCA
CAGCAGCCACGTGATGCTTATGTGCAACGGGCTGTTGAAGCTGCACCCAA
TGCGGCACTAGACGAAGTAGCGGACTGCAGCCTGCGCAGCGCAAGCGGAC
AGCGGTTCCTCCAGCAGCAACGCGACATCTGCGAAGCTGAGGCGGAGAGG
CAGCGCACCCACTACATCAACAGTTATATGCAGGTAGCAGCAGATGTCTA
CTGCGAGGCGATGCGCCGTACAGATGGAGCTGTCGCATGCTCTGATAATG
CCGCCGCCAAGGCGCAGCAGCGGGCCGCCATCGAGTTTGACCGTGGGGTG
GCTCAGGCGCAGCTGGCGCAGGCACAGCCGGCGCAGGCACAGCAAAAGCA
GGCGCAGCAAAAGCAGGCGCAGCAGCAGCAGGCACAGCAGCAGCAGGAGG
CGCAGGAGGCGGCACAGCGCGTAGCTGAGGGCCACCTCGGCAGCGAGAGA
GTGCTGGACGCAATTGTAGTATACAGTTGTGCCTCCCAAGAAGCACGTGA
TGCTCCTGCTGACCACGTTGACGCCGGCTCCAGCTCGTTTGAGGAGTGA
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protein sequence of jgi.p|Trimin1|353969

>Trimin1|353969|estExt_Genemark1.C_Ctg_2000024 ID=Trimin1|353969|estExt_Genemark1.C_Ctg_2000024|Name=jgi.p|Trimin1|353969|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=324bp
MAVADCIMCTRKIAEREHVMAAFGAPSRPVHVSCAIAPMALLDPDTQKVC
TRDCFNEVEGGLCIYCRGKEEAIKEPEGKGKKRQRPVAQQHDGEGIKEPG
AKGKGGNRPRPISPQHDGEGIKEPGKEAISSSNSSSRPDSSQQPRDAYVQ
RAVEAAPNAALDEVADCSLRSASGQRFLQQQRDICEAEAERQRTHYINSY
MQVAADVYCEAMRRTDGAVACSDNAAAKAQQRAAIEFDRGVAQAQLAQAQ
PAQAQQKQAQQKQAQQQQAQQQQEAQEAAQRVAEGHLGSERVLDAIVVYS
CASQEARDAPADHVDAGSSSFEE*
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mRNA from alignment at Contig_200:205921..207537-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17197 ID=mRNA_17197|Name=jgi.p|Trimin1|353969|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1617bp|location=Sequence derived from alignment at Contig_200:205921..207537- (Tribonema minus UTEX_B_3156 )
GACAACTTTGCCGTTGCTTTCGTGATGATGAACAGGTCTTCACACTGCAC
ACAGACAAATGCAACCGCCCTTGCAACATGGCAGTGGCCGACTGCATCAT
GTGCACGCGCAAGATTGCGGAGAGGGAGCACGTGATGGCCGCTTTTGGTG
CACCATCCCGCCCTGTGCACGTTTCATGTGCCATAGCACCCATGGCGCTG
CTGGATCCAGACACTCAGAAGGTCTGCACCAGGGACTGCTTCAATGAGGT
GGAAGGAGGCCTCTGCATATATTGCCGCGGGAAGGAAGGTAAGCATCGTG
TCATACGCCTTGTGGCAAATGCACTGTGCAAGTGCATGAGCATGTGTGTG
TACGTGCACAATCGATCGCCTGTGCTGACTTCATCTGCATGATCTTCCCG
CATTGTTGTCTGTCTCAGGCACGATGGTCGAATGCGCCCACCCGTCATGT
CAACAGATGGTGCACGCATCTTGCGCAAACACCGAAGGCGCGCTGGCCGT
GGCGTTGGAAGGAGGTGTCTTGTCTTAGCGTGTCACCTGCAGCAACCACA
AGGCCAACGTGCAGCGCTACCTCATCAGCAACTTGCTGCGTGAACTGGGC
GGAGATCCCAATCTTGTCACCCAGGAGCGGCTAGCAGATGGTCGCATGTT
TGGGAGTATCAAGTCATTCATGCATAAGAATGCGCGCGGCCAGCAGCAAT
TTGTGGCGGCTGTCATCAGCTGCGCAAAGCGGTACAGGCGGTGCATGAAA
CGCCTCGGCAATCATCAGGCACAGCTCACGCACACTGCACAAGCGGTCGA
CCCATCTGCAGTGCCACAGGCTTGCCAGCAGTAGGAGGCGGCAAATCACA
GTGGAGAGGCCATTAAGGAGCCGGAGGGTAAGGGGAAGAAACGCCAGCGG
CCCGTTGCACAGCAGCACGATGGAGAGGGCATCAAGGAGCCGGGCGCTAA
GGGCAAGGGGGGAAACCGGCCACGGCCCATTTCACCGCAGCACGATGGAG
AGGGCATCAAGGAGCCGGGAAAGGAGGCTATCAGCAGTAGCAACAGCTCG
TCACGACCTGATTCATCACAGCAGCCACGTGATGCTTATGTGCAACGGGC
TGTTGAAGCTGCACCCAATGCGGCACTAGACGAAGTAGCGGACTGCAGCC
TGCGCAGCGCAAGCGGACAGCGGTTCCTCCAGCAGCAACGCGACATCTGC
GAAGCTGAGGCGGAGAGGCAGCGCACCCACTACATCAACAGTTATATGCA
GGTAGCAGCAGATGTCTACTGCGAGGCGATGCGCCGTACAGATGGAGCTG
TCGCATGCTCTGATAATGCCGCCGCCAAGGCGCAGCAGCGGGCCGCCATC
GAGTTTGACCGTGGGGTGGCTCAGGCGCAGCTGGCGCAGGCACAGCCGGC
GCAGGCACAGCAAAAGCAGGCGCAGCAAAAGCAGGCGCAGCAGCAGCAGG
CACAGCAGCAGCAGGAGGCGCAGGAGGCGGCACAGCGCGTAGCTGAGGGC
CACCTCGGCAGCGAGAGAGTGCTGGACGCAATTGTAGTATACAGTTGTGC
CTCCCAAGAAGCACGTGATGCTCCTGCTGACCACGTTGACGCCGGCTCCA
GCTCGTTTGAGGAGTGA
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Coding sequence (CDS) from alignment at Contig_200:205921..207537-

>mRNA_17197 ID=mRNA_17197|Name=jgi.p|Trimin1|353969|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=972bp|location=Sequence derived from alignment at Contig_200:205921..207537- (Tribonema minus UTEX_B_3156 )
ATGGCAGTGGCCGACTGCATCATGTGCACGCGCAAGATTGCGGAGAGGGA
GCACGTGATGGCCGCTTTTGGTGCACCATCCCGCCCTGTGCACGTTTCAT
GTGCCATAGCACCCATGGCGCTGCTGGATCCAGACACTCAGAAGGTCTGC
ACCAGGGACTGCTTCAATGAGGTGGAAGGAGGCCTCTGCATATATTGCCG
CGGGAAGGAAGAGGCCATTAAGGAGCCGGAGGGTAAGGGGAAGAAACGCC
AGCGGCCCGTTGCACAGCAGCACGATGGAGAGGGCATCAAGGAGCCGGGC
GCTAAGGGCAAGGGGGGAAACCGGCCACGGCCCATTTCACCGCAGCACGA
TGGAGAGGGCATCAAGGAGCCGGGAAAGGAGGCTATCAGCAGTAGCAACA
GCTCGTCACGACCTGATTCATCACAGCAGCCACGTGATGCTTATGTGCAA
CGGGCTGTTGAAGCTGCACCCAATGCGGCACTAGACGAAGTAGCGGACTG
CAGCCTGCGCAGCGCAAGCGGACAGCGGTTCCTCCAGCAGCAACGCGACA
TCTGCGAAGCTGAGGCGGAGAGGCAGCGCACCCACTACATCAACAGTTAT
ATGCAGGTAGCAGCAGATGTCTACTGCGAGGCGATGCGCCGTACAGATGG
AGCTGTCGCATGCTCTGATAATGCCGCCGCCAAGGCGCAGCAGCGGGCCG
CCATCGAGTTTGACCGTGGGGTGGCTCAGGCGCAGCTGGCGCAGGCACAG
CCGGCGCAGGCACAGCAAAAGCAGGCGCAGCAAAAGCAGGCGCAGCAGCA
GCAGGCACAGCAGCAGCAGGAGGCGCAGGAGGCGGCACAGCGCGTAGCTG
AGGGCCACCTCGGCAGCGAGAGAGTGCTGGACGCAATTGTAGTATACAGT
TGTGCCTCCCAAGAAGCACGTGATGCTCCTGCTGACCACGTTGACGCCGG
CTCCAGCTCGTTTGAGGAGTGA
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