mRNA_17200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141481
Unique NamemRNA_17200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|141481 vs. uniprot
Match: A0A835Z5G3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G3_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.560e-28
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 DADLAGMRAHRDNAEVQHAGLKAVVSLARGCAVGQAALVTAGKPDAVXXXXXXXXXXXXXXXXXXXXXXXLAKDSAQXXXXXXXXXXXXXXXXXXXPGVPVQHXXXXXXXNLAQGCAAA 357
            DADLAGMRAHRDNAEVQHAGLKAVVSLARGCAVGQAALVTAGKPDAVXXXXXXXXXXXXXXXXXXXXXXXLAKDSAQXXXXXXXXXXXXXXXXXXXPGVPVQHXXXXXXXNLAQGCAAA
Sbjct:    1 DADLAGMRAHRDNAEVQHAGLKAVVSLARGCAVGQAALVTAGKPDAVXXXXXXXXXXXXXXXXXXXXXXXLAKDSAQXXXXXXXXXXXXXXXXXXXPGVPVQHXXXXXXXNLAQGCAAA 119
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141481 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z5G3_9STRA2.560e-28100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_200contigContig_200:224970..226115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141481|gw1.200.18.1
Hectar predicted targeting categoryother localisation
TranscriptId141803
TrackFilteredModels1
ProteinId141481
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141481gene_17200Tribonema minus UTEX_B_3156 geneContig_200 224970..226115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141481Trimin1|141481|gw1.200.18.1Tribonema minus UTEX_B_3156 polypeptideContig_200 224970..226115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17200_2exon_17200_2Tribonema minus UTEX_B_3156 exonContig_200 224970..225478 -
exon_17200_1exon_17200_1Tribonema minus UTEX_B_3156 exonContig_200 225893..226115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17200CDS_17200Tribonema minus UTEX_B_3156 CDSContig_200 225893..226115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17200 ID=mRNA_17200|Name=jgi.p|Trimin1|141481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_200:224970..226115- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GATGCGGATTTAGCAGGGATGCGCGCGCATCGGGATAATGCAGAAGTCCA
GCACGCTGGCCTCAAGGCAGTCGTCAGTCTGGCCAGAGGCTGCGCAGTGG
GTCAAGCAGCGCTGGTCACGGCCGGTAAGCCTGATGCGGTGGTTGCAGGG
TTGTGCGCGCATCGGGACGATGCAGTAGTCCAGTTCAATGGCCTCTACGC
AGTCGCCCTGCTGGCCAAAGACTCGGCGCAAGCAGCGCTGGTCACGGCCG
GTGCGCCTGATGCGGTGGTGGCAGGGCTGCATGCGCATCCCGGTGTACCA
GTCCAGCACAATGGCCTCTACGCAGTCGCCAACCTGGCTCAAGGCTGCGC
AGCGGCGCAAGCAGCGCTGGTCACGGCCGGTGCGCCTGATGCGGTGGTGG
CAGGGCTGCGCGCGCATCCCGGTGTACAAGTCCAGCGCGCTGGCCTCACG
GCAGCCTTCTTTCTCACCAGAGGCTGCGCAGCGGGCCAAGCAGCGCTGGT
GACGGCCGGTGCGCCTGATGCGGTGGTGGCAGGGCTGTGCGCGCATCCCA
GCGATGCGGGAGTCCAGCGCGATGGCCTCACGGCAGCCTTCTATCTCACC
AGAGGCTGCGCAGCGGGCCAAGCAGCGCTGGTGACGGCCGGTGCGCCTGA
TGCGGTGGTGGCAGGGCTGTGCGCGCATCCCAGCGATGCGGGAGTCCAGC
GCTTTGGCCTGCTTACAGCCGCCTATCTGGCC
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protein sequence of jgi.p|Trimin1|141481

>Trimin1|141481|gw1.200.18.1 ID=Trimin1|141481|gw1.200.18.1|Name=jgi.p|Trimin1|141481|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp
DADLAGMRAHRDNAEVQHAGLKAVVSLARGCAVGQAALVTAGKPDAVVAG
LCAHRDDAVVQFNGLYAVALLAKDSAQAALVTAGAPDAVVAGLHAHPGVP
VQHNGLYAVANLAQGCAAAQAALVTAGAPDAVVAGLRAHPGVQVQRAGLT
AAFFLTRGCAAGQAALVTAGAPDAVVAGLCAHPSDAGVQRDGLTAAFYLT
RGCAAGQAALVTAGAPDAVVAGLCAHPSDAGVQRFGLLTAAYLA
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mRNA from alignment at Contig_200:224970..226115-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17200 ID=mRNA_17200|Name=jgi.p|Trimin1|141481|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1146bp|location=Sequence derived from alignment at Contig_200:224970..226115- (Tribonema minus UTEX_B_3156 )
GATGCGGATTTAGCAGGGATGCGCGCGCATCGGGATAATGCAGAAGTCCA
GCACGCTGGCCTCAAGGCAGTCGTCAGTCTGGCCAGAGGCTGCGCAGTGG
GTCAAGCAGCGCTGGTCACGGCCGGTAAGCCTGATGCGGTGGTTGCAGGG
TTGTGCGCGCATCGGGACGATGCAGTAGTCCAGTTCAATGGCCTCTACGC
AGTCGCCCTGCTGGCCAAAGACTGTGCGGCCGGCCAAGCAGCGCTGGTCA
CGGCCGGTGCGCCCGATGCGGTGCAGGCAGGGCTGCGCGCGCATCCCGGT
CATGCGAGAGTCCAGTGCAGCGGCCTCATTGTAGTCGCCAGTCTGGCCCA
TGGCTGCGCAGCGGCGCAAGCAGCGCTGGTCACGGCCGGTGCGCCTGATG
CGGTGCCACCAGTGGTTGCAGGGCTGTGTGCGCATCCCGATAATGCAGAA
GTCCAAAGCACTGGCCTCTACGCAGTCACCAATCTCAGACTGGCCCAAGG
CTGCGCAGCGGCGCAAGCAGCGCTGGTCACGGCCGGTGCGCCTGATGCGG
TGGTGGCAGGGCTGCATGCGCATCCCGGTGTACAAGTCCAGCGCAATGGC
CTCTAAGCAGTCGCCAATCTGGCTCAAGGCTGCACAGCGGCGCAAGCAGC
GCTGGTCACGGCCGGTGCGCCTGATGCGGTGGTGGCAGGGCTGCATGCGC
ATCCCGGTGTACCAGTCCAGCACAATGGCCTCTACGCAGTCGCCAACCTG
GCTCAAGGCTGCGCAGCGGCGCAAGCAGCGCTGGTCACGGCCGGTGCGCC
TGATGCGGTGGTGGCAGGGCTGCGCGCGCATCCCGGTGTACAAGTCCAGC
GCGCTGGCCTCACGGCAGCCTTCTTTCTCACCAGAGGCTGCGCAGCGGGC
CAAGCAGCGCTGGTGACGGCCGGTGCGCCTGATGCGGTGGTGGCAGGGCT
GTGCGCGCATCCCAGCGATGCGGGAGTCCAGCGCGATGGCCTCACGGCAG
CCTTCTATCTCACCAGAGGCTGCGCAGCGGGCCAAGCAGCGCTGGTGACG
GCCGGTGCGCCTGATGCGGTGGTGGCAGGGCTGTGCGCGCATCCCAGCGA
TGCGGGAGTCCAGCGCTTTGGCCTGCTTACAGCCGCCTATCTGGCC
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Coding sequence (CDS) from alignment at Contig_200:224970..226115-

>mRNA_17200 ID=mRNA_17200|Name=jgi.p|Trimin1|141481|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_200:224970..226115- (Tribonema minus UTEX_B_3156 )
GATGCGGATTTAGCAGGGATGCGCGCGCATCGGGATAATGCAGAAGTCCA
GCACGCTGGCCTCAAGGCAGTCGTCAGTCTGGCCAGAGGCTGCGCAGTGG
GTCAAGCAGCGCTGGTCACGGCCGGTAAGCCTGATGCGGTGGTTGCAGGG
TTGTGCGCGCATCGGGACGATGCAGTAGTCCAGTTCAATGGCCTCTACGC
AGTCGCCCTGCTGGCCAAAGACTCGGCGCAAGCAGCGCTGGTCACGGCCG
GTGCGCCTGATGCGGTGGTGGCAGGGCTGCATGCGCATCCCGGTGTACCA
GTCCAGCACAATGGCCTCTACGCAGTCGCCAACCTGGCTCAAGGCTGCGC
AGCGGCGCAAGCAGCGCTGGTCACGGCCGGTGCGCCTGATGCGGTGGTGG
CAGGGCTGCGCGCGCATCCCGGTGTACAAGTCCAGCGCGCTGGCCTCACG
GCAGCCTTCTTTCTCACCAGAGGCTGCGCAGCGGGCCAAGCAGCGCTGGT
GACGGCCGGTGCGCCTGATGCGGTGGTGGCAGGGCTGTGCGCGCATCCCA
GCGATGCGGGAGTCCAGCGCGATGGCCTCACGGCAGCCTTCTATCTCACC
AGAGGCTGCGCAGCGGGCCAAGCAGCGCTGGTGACGGCCGGTGCGCCTGA
TGCGGTGGTGGCAGGGCTGTGCGCGCATCCCAGCGATGCGGGAGTCCAGC
GCTTTGGCCTGCTTACAGCCGCCTATCTGGCC
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