Trimin1|348160|estExt_Genemark1.C_Ctg_200108 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348160
Unique Name	Trimin1\|348160\|estExt_Genemark1.C_Ctg_200108
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	888

Homology

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BLAST of jgi.p|Trimin1|348160 vs. uniprot
Match: A0A836CGX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX7_9STRA)

HSP 1 Score: 1095 bits (2831), Expect = 0.000e+0
Identity = 887/887 (100.00%), Postives = 887/887 (100.00%), Query Frame = 0

Query:    1 MTDKGGGDERKRVLFTAVRLNRADVIKAVATGSAAGDKAXXXXXXXXXXXXAVDPSVLDCLDDSRSFTPLHAAIDYGHMDALRMLLRLGADVAALAGGRTPVQLAFATDEFADAQQVFVTEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQVFVTEAVQAIAAGNKDRLQLLPAASLPLAADTXXXXXXXXXXXXXXXXXXXXXXXXGHGATSTSLLAWAKDAGEPEMLAALEGCLASSAAAAAVISAQPAAQRCVYVYDMYTEVYEARALHGRCGGLRRLCDTRVLTPSSVLSHLHEMSKGAPAAXXXXXXXXXXXXXXXXXXLSPGAALDADIAECRAYIAALLEERDALSGVLAARGTDRVVAVLRDVMLRVRDAHAALEEQEAELEAAEGDVARARDGNAALQAELAAARAARSXXXXXXXXXXXXXXXXXXXXADSATGELRRGERVLYVKSDAAAAXAAEAEVVKVHLEDPQSPYYTVRLLETGQERNTTAAHLRXXXXXXXXXXXXXXXXXXXXXGGAHNGAPNGXXXXXXXXXXXXREQMPAPLXXXXXXXXPXEAAAPPLSAAPQSPLAAQRMSXTIASPPRVAGSPASPQLRRAAADRRAEERRALLAQLMDTAGELMGAAGELDDEVTAMRALAVGAAADVVRRISRLRAEAADALEAARESXXXXXXXXXXXXXXXXXXXXXXXLLQAEARTALSGASSPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPIDAVAALHMEHMEAARGGGGGEVEDEVEEDVPAGRRGRPVVVSAYDDASLESALMEKARSDQANRGLWVSXXXXXXXXXSLLGMLFGWKPPADQDSSSNPIFVA 887
            MTDKGGGDERKRVLFTAVRLNRADVIKAVATGSAAGDKAXXXXXXXXXXXXAVDPSVLDCLDDSRSFTPLHAAIDYGHMDALRMLLRLGADVAALAGGRTPVQLAFATDEFADAQQVFVTEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQVFVTEAVQAIAAGNKDRLQLLPAASLPLAADTXXXXXXXXXXXXXXXXXXXXXXXXGHGATSTSLLAWAKDAGEPEMLAALEGCLASSAAAAAVISAQPAAQRCVYVYDMYTEVYEARALHGRCGGLRRLCDTRVLTPSSVLSHLHEMSKGAPAAXXXXXXXXXXXXXXXXXXLSPGAALDADIAECRAYIAALLEERDALSGVLAARGTDRVVAVLRDVMLRVRDAHAALEEQEAELEAAEGDVARARDGNAALQAELAAARAARSXXXXXXXXXXXXXXXXXXXXADSATGELRRGERVLYVKSDAAAAXAAEAEVVKVHLEDPQSPYYTVRLLETGQERNTTAAHLRXXXXXXXXXXXXXXXXXXXXXGGAHNGAPNGXXXXXXXXXXXXREQMPAPLXXXXXXXXPXEAAAPPLSAAPQSPLAAQRMSXTIASPPRVAGSPASPQLRRAAADRRAEERRALLAQLMDTAGELMGAAGELDDEVTAMRALAVGAAADVVRRISRLRAEAADALEAARESXXXXXXXXXXXXXXXXXXXXXXXLLQAEARTALSGASSPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPIDAVAALHMEHMEAARGGGGGEVEDEVEEDVPAGRRGRPVVVSAYDDASLESALMEKARSDQANRGLWVSXXXXXXXXXSLLGMLFGWKPPADQDSSSNPIFVA
Sbjct:    1 MTDKGGGDERKRVLFTAVRLNRADVIKAVATGSAAGDKAXXXXXXXXXXXXAVDPSVLDCLDDSRSFTPLHAAIDYGHMDALRMLLRLGADVAALAGGRTPVQLAFATDEFADAQQVFVTEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQVFVTEAVQAIAAGNKDRLQLLPAASLPLAADTXXXXXXXXXXXXXXXXXXXXXXXXGHGATSTSLLAWAKDAGEPEMLAALEGCLASSAAAAAVISAQPAAQRCVYVYDMYTEVYEARALHGRCGGLRRLCDTRVLTPSSVLSHLHEMSKGAPAAXXXXXXXXXXXXXXXXXXLSPGAALDADIAECRAYIAALLEERDALSGVLAARGTDRVVAVLRDVMLRVRDAHAALEEQEAELEAAEGDVARARDGNAALQAELAAARAARSXXXXXXXXXXXXXXXXXXXXADSATGELRRGERVLYVKSDAAAAXAAEAEVVKVHLEDPQSPYYTVRLLETGQERNTTAAHLRXXXXXXXXXXXXXXXXXXXXXGGAHNGAPNGXXXXXXXXXXXXREQMPAPLXXXXXXXXPXEAAAPPLSAAPQSPLAAQRMSXTIASPPRVAGSPASPQLRRAAADRRAEERRALLAQLMDTAGELMGAAGELDDEVTAMRALAVGAAADVVRRISRLRAEAADALEAARESXXXXXXXXXXXXXXXXXXXXXXXLLQAEARTALSGASSPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHVPIDAVAALHMEHMEAARGGGGGEVEDEVEEDVPAGRRGRPVVVSAYDDASLESALMEKARSDQANRGLWVSXXXXXXXXXSLLGMLFGWKPPADQDSSSNPIFVA 887

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348160 vs. uniprot

BLAST of jgi.p|Trimin1|348160 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CGX7_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 404..452
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 793..817
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 529..645
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 65..92 score: 11.585487
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 65..94 e-value: 1.3E-4 score: 31.3
IPR002110	Ankyrin repeat	PFAM	PF00023	Ank	coord: 67..94 e-value: 0.0011 score: 19.3
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 65..97 score: 11.94154
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 2..135 e-value: 2.1E-9 score: 38.8
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 15..101
IPR006311	Twin-arginine translocation pathway, signal sequence	PROSITE	PS51318	TAT	coord: 1..49 score: 7.816129

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_20	contig	Contig_20:814454..821706 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348160	mRNA_4143	Tribonema minus UTEX_B_3156	mRNA	Contig_20 814454..821850 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348160|estExt_Genemark1.C_Ctg_200108 ID=Trimin1|348160|estExt_Genemark1.C_Ctg_200108|Name=jgi.p|Trimin1|348160|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=888bp
MTDKGGGDERKRVLFTAVRLNRADVIKAVATGSAAGDKAAAAAAPAAAAA
AAVDPSVLDCLDDSRSFTPLHAAIDYGHMDALRMLLRLGADVAALAGGRT
PVQLAFATDEFADAQQVFVTEAVQLAFATDKFADAQQVFVTEAVQLAFAT
DEFADAQQVFVTEAVQLAFATDEFADAQQVFVTEAVQVFVTEAVQAIAAG
NKDRLQLLPAASLPLAADTAIAAGDKDRLQLLLAAGLPPEAEIGHGATST
SLLAWAKDAGEPEMLAALEGCLASSAAAAAVISAQPAAQRCVYVYDMYTE
VYEARALHGRCGGLRRLCDTRVLTPSSVLSHLHEMSKGAPAAAAAGTTAA
AAAPPPPPPPLSPGAALDADIAECRAYIAALLEERDALSGVLAARGTDRV
VAVLRDVMLRVRDAHAALEEQEAELEAAEGDVARARDGNAALQAELAAAR
AARSSAAAAAAAAAQTAAAGGGGGADSATGELRRGERVLYVKSDAAAAAA
AEAEVVKVHLEDPQSPYYTVRLLETGQERNTTAAHLRRHGAAAGSSGGGG
GGAANEQQGGAHNGAPNGSAAGSGGAGDGAREQMPAPLPAAAAAAAPAEA
AAPPLSAAPQSPLAAQRMSPTIASPPRVAGSPASPQLRRAAADRRAEERR
ALLAQLMDTAGELMGAAGELDDEVTAMRALAVGAAADVVRRISRLRAEAA
DALEAARESATAAERWRAQAAALQRHGAQLSALLQAEARTALSGASSPIA
AAAAAAAAALPARRRSSGSSERRNGAAAAAHVPIDAVAALHMEHMEAARG
GGGGEVEDEVEEDVPAGRRGRPVVVSAYDDASLESALMEKARSDQANRGL
WVSDEANCGLWVSLLGMLFGWKPPADQDSSSNPIFVA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR036770	Ankyrin_rpt-contain_sf
IPR006311	TAT_signal