mRNA_4063 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|38639
Unique NamemRNA_4063
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|38639 vs. uniprot
Match: A0A836CI34_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI34_9STRA)

HSP 1 Score: 469 bits (1206), Expect = 2.480e-164
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 
Query:   34 METAFDELEGGPATLKFSSSRSVHKASAVSGAAPVSTVAPPPFSRRAEPACNVVGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQGVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAAVGKIGAYVGMLSSSSFFYAGAAQLMFEVNSIRWWGMSA 732
            METAFDELEGGPATLKFSSSRSVHKASAVSGAAPVSTVAPPPFSRRAEPACNVVGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQGVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAAVGKIGAYVGMLSSSSFFYAGAAQLMFEVNSIRWWGMSA
Sbjct:    1 METAFDELEGGPATLKFSSSRSVHKASAVSGAAPVSTVAPPPFSRRAEPACNVVGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQGVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAAVGKIGAYVGMLSSSSFFYAGAAQLMFEVNSIRWWGMSA 233
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BLAST of jgi.p|Trimin1|38639 vs. uniprot
Match: A0A835YR69_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR69_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.180e-31
Identity = 69/201 (34.33%), Postives = 110/201 (54.73%), Query Frame = 1 
Query:  154 PPFSRRAEPACNVVGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQ-----GVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLA---LTPWTAAVGK---IGAYVGMLSSSSFFYAGAAQLMFEVNSIRWWG 723
            PP  +  + +   +G MA G+T ++LMY   GW++  F++ V+ +A+  GG  QLLA +W +  G    AT    +G FWL +G LRVL+ Q     G  WGP+S  F T + LFL +W +++++ F +   K+P A++F F ++ +A  LLA     P +         G YVG+L ++S  Y    ++ +E   IRW G
Sbjct:   11 PPAHQPGQISAGPLGLMAFGMTTLMLMYVEAGWLEPGFVDVVVCYAIFFGGAAQLLAGMWEMACGRTFSATAFSSYGCFWLGFGILRVLKQQSLHDGGFAWGPSSAGFETGEALFLAQWGVMSLLYFTLT-FKKPRALQFIFLTVTIAFFLLAGGHANPGSKVAQDSRVAGGYVGLLCAASAVYLSIGEMQYETYGIRWPG 210
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BLAST of jgi.p|Trimin1|38639 vs. uniprot
Match: A0A835ZDQ2_9STRA (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.830e-27
Identity = 63/178 (35.39%), Postives = 101/178 (56.74%), Query Frame = 1 
Query:  166 RRAEPACNVVGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQGVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAAVGKIGAYVGMLSSSSFFYAGAAQLMFE 699
            ++A PA   +G  A  LT ++LMY    W +  F+E V+  A+  GG VQ++A +W + RG    AT    +GGFWL W  LRVL+L G T+GPT+  + TA+ L+L  W + + +M L+   K P+A+R  F  L +A  LL +  +     + G YVG++ ++   Y   ++++ E
Sbjct:   44 KQANPA--PLGLFAFALTTMMLMYVEAEWAEPGFVEVVVCTAIFFGGAVQIMAGMWEMARGSTFAATAFSSYGGFWLGWAFLRVLKLAGFTFGPTTEGYETAEALYLGTWGLFSFLMSLLLFGK-PWALRLTFYILTLAFFLLVIGEFHEHAKQAGGYVGLVCAAGAAYTAFSEMVEE 218
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BLAST of jgi.p|Trimin1|38639 vs. uniprot
Match: A0A0G4FF82_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FF82_VITBC)

HSP 1 Score: 76.3 bits (186), Expect = 3.680e-12
Identity = 50/177 (28.25%), Postives = 80/177 (45.20%), Query Frame = 1 
Query:  193 VGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQ-GVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAAVGK-------IGAYVGMLSSSSFFYAGAAQLMFE 699
            +G ++ G+T + LMY +  W +    E VI +AL  GGV Q++A IW +++G+   A+    +G FW  W       ++ G T G     FAT   L+L +W ++  + FL    K           L     LL++T W  A G        +  Y G L+  +  Y   A++  E
Sbjct:   41 LGLLSFGMTTLFLMYIDMEWSEGGVKELVIAYALWYGGVGQIIAGIWEMLKGNTFAASAFSSYGFFWCGWSLFNSKVVEAGYTPGS---KFATGDALYLGQWGVLTFLFFLATLQKNR--------CLQAVFLLLSITFWLLAGGVFDETCKIVAGYFGFLTGLAAIYTAFAEIYEE 206
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BLAST of jgi.p|Trimin1|38639 vs. uniprot
Match: D1BIJ5_SANKS (Predicted membrane protein n=3 Tax=Sanguibacter TaxID=60919 RepID=D1BIJ5_SANKS)

HSP 1 Score: 67.0 bits (162), Expect = 2.530e-9
Identity = 48/162 (29.63%), Postives = 79/162 (48.77%), Query Frame = 1 
Query:  193 VGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQGVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAA--VGKIGAYVGMLSSSSFFY 672
            +G  A  LT  +L   N G +D +    V+P AL  GG+VQLLA +W L++ +   A     +G FW+++     L + G+     +     A  LFL+ WTI  + M +V   K    +   F  L++  ALL +     A  V  +  +VG+L++ + +Y
Sbjct:   19 LGLAAFALTTFVLSVFNAGILDPSLEPVVLPLALFYGGLVQLLAGMWELLKNNTFGALAFSSYGAFWMSFAAYVKLVVPGLP----ADTAHQATGLFLLAWTIFTVYMTVVTL-KVSVGLMSVFVPLSITFALLTVGALAQAETVTHVAGFVGLLTAGTAWY 175
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BLAST of jgi.p|Trimin1|38639 vs. uniprot
Match: A0A1Y2GAL3_9FUNG (GPR1/FUN34/yaaH family-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GAL3_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 9.420e-6
Identity = 47/149 (31.54%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:  289 ALCQGGVVQLLAAIWSLVRGHMLDATFHMLWGGFWLAWGTLRV----LRLQGVTWGPTSPDFATAQCLFLMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWT-----AAVGKIGAYVGMLSSSSFFYAGAAQLMFEVNS 708
            AL  GG+VQ+LA +WS+  G+  +AT    +G +W A+G +      +R     + P +   AT   +FL+ W ++A+++  V   K   A    F  L + L  L +  +      AA  +IGA  G+LS+   F+ GAA L    NS
Sbjct:   56 ALWYGGIVQILAGMWSMKVGNTFEATAFSSFGAYWAAYGYMFFPGTGIRESYEGFEPEALKNATG--IFLVIWLLMALIL-TVGTTKSTIATIAMFVFLDLHLLFLTINEFAHLSEGAAPKRIGAVFGILSAIMAFWNGAAALWLPSNS 201
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|38639 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CI34_9STRA2.480e-164100.00GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835YR69_9STRA3.180e-3134.33GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A835ZDQ2_9STRA1.830e-2735.39GPR1/FUN34/yaaH family-domain-containing protein n... [more]
A0A0G4FF82_VITBC3.680e-1228.25Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D1BIJ5_SANKS2.530e-929.63Predicted membrane protein n=3 Tax=Sanguibacter Ta... [more]
A0A1Y2GAL3_9FUNG9.420e-631.54GPR1/FUN34/yaaH family-domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_20contigContig_20:212917..214663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|38639|CE38638_155
BRITEko00000
KEGG koko:K07034
Descriptionacetate transmembrane transporter activity
COG categoryS
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG1584@1|root,2QUJS@2759|Eukaryota,39ZTU@33154|Opisthokonta
Evalue1.85e-17
Seed ortholog72019.SARC_09697T0
Hectar predicted targeting categoryother localisation
TranscriptId38961
TrackFilteredModels1
ProteinId38639
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|38639gene_4063Tribonema minus UTEX_B_3156 geneContig_20 212917..214663 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4063_1exon_4063_1Tribonema minus UTEX_B_3156 exonContig_20 212917..213141 +
exon_4063_2exon_4063_2Tribonema minus UTEX_B_3156 exonContig_20 213693..214663 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4063UTR5_4063Tribonema minus UTEX_B_3156 five_prime_UTRContig_20 212917..212949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4063CDS_4063Tribonema minus UTEX_B_3156 CDSContig_20 212950..213141 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4063UTR3_4063Tribonema minus UTEX_B_3156 three_prime_UTRContig_20 214203..214663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|38639Trimin1|38639|CE38638_155Tribonema minus UTEX_B_3156 polypeptideContig_20 212950..214202 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4063 ID=mRNA_4063|Name=jgi.p|Trimin1|38639|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1196bp|location=Sequence derived from alignment at Contig_20:212917..214663+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCCTCAGGCACGGGGCGGTTTATTCCCCGCAAGATGGAGACAGCCTTTGA
TGAGCTGGAAGGAGGCCCAGCCACGCTCAAGTTTTCATCATCACGCAGCG
TGCACAAGGCCTCCGCGGTCAGTGGGGCTGCACCAGTCTCCACGGTCGCA
CCGCCTCCATTTTCTCGTCGTGCCGAGCCGGCGTGCAATGTGGTGGGCTT
CATGGCTTGCGGTTTGACAGGCGTGCTGCTGATGTACGCCAACACCGGCT
GGGTGGACAAGGCCTTCATCGAGTTCGTCATCCCTCACGCCCTGTGCCAG
GGCGGCGTCGTGCAGCTGCTGGCGGCCATCTGGTCCCTCGTCAGGGGCCA
CATGCTGGACGCCACGTTCCACATGCTCTGGGGGGGCTTCTGGCTCGCTT
GGGGGACGCTCCGCGTGCTGCGCCTGCAGGGCGTAACCTGGGGCCCTACC
TCCCCCGACTTTGCCACCGCGCAGTGCCTCTTCCTCATGGAGTGGACCAT
TGTGGCGATCGTCATGTTCCTGGTGGCGCGGCACAAGCGCCCGTTTGCGG
TGCGCTTCGCGTTCGGCTCGCTCGCCGTCGCGCTCGCGCTCCTCGCGCTG
ACGCCGTGGACGGCCGCCGTCGGCAAGATCGGCGCGTACGTCGGCATGCT
GTCGTCGTCGTCGTTCTTCTACGCGGGCGCCGCGCAGCTCATGTTCGAGG
TCAACAGCATACGCTGGTGGGGGATGAGCGCATGAGGGCGAGCGCTGCTG
CTGCTGCTGCTGCCGCGGTGCCCGCAGCGTACATACCCCCTTCCCCCCCG
CCCCCCCATTTGCCAAGTCTCGGTGAGGTGCGCATGCTGCAGGTTGCGTG
TGAAAAAATGTGGCCACGTTCCGCACACAGCGCCGTGCCTGGCCCTCCCC
CCCCCGGTGGTCGAGGTTTATCAGAGTAGAGGAACCCCTATGCATGCTCC
CACCCAAGTAGGGCAGCTCCCACCCACCCCACTTTGCTGCCCCCCCCTGT
CGCAACGGCAGAGTGAGCATGCCACCCCGACAGAGTCGATTCGTATGCGT
ATTGCGTGCCCCGTGATTCGATGCCACGGGCGCAGACCAATGGCAGCCTA
GCACCGCTGGGCGCCAGTTGCGCTTGAATGGCAGTCCGCCCGTCCAGAGC
ATGTCAACATTTTGAAATGCACTCCATGCTCTGAGTTGGCATCCGC
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protein sequence of jgi.p|Trimin1|38639

>Trimin1|38639|CE38638_155 ID=Trimin1|38639|CE38638_155|Name=jgi.p|Trimin1|38639|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
METAFDELEGGPATLKFSSSRSVHKASAVSGAAPVSTVAPPPFSRRAEPA
CNVVGFMACGLTGVLLMYANTGWVDKAFIEFVIPHALCQGGVVQLLAAIW
SLVRGHMLDATFHMLWGGFWLAWGTLRVLRLQGVTWGPTSPDFATAQCLF
LMEWTIVAIVMFLVARHKRPFAVRFAFGSLAVALALLALTPWTAAVGKIG
AYVGMLSSSSFFYAGAAQLMFEVNSIRWWGMSA*
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mRNA from alignment at Contig_20:212917..214663+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4063 ID=mRNA_4063|Name=jgi.p|Trimin1|38639|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1747bp|location=Sequence derived from alignment at Contig_20:212917..214663+ (Tribonema minus UTEX_B_3156 )
CCCTCAGGCACGGGGCGGTTTATTCCCCGCAAGATGGAGACAGCCTTTGA
TGAGCTGGAAGGAGGCCCAGCCACGCTCAAGTTTTCATCATCACGCAGCG
TGCACAAGGCCTCCGCGGTCAGTGGGGCTGCACCAGTCTCCACGGTCGCA
CCGCCTCCATTTTCTCGTCGTGCCGAGCCGGCGTGCAATGTGGTGGGCTT
CATGGCTTGCGGTTTGACAGGCGTGGTAAGTCTCGATTTTTTGCGTCAAG
CGTGGTGATGCTTGCGTGCGCGAGCCTGAGCTTGTCGGCTGCATAAGCTC
TCCCAATCAATGTGCTGTCCTTGCGTATGTTTCCAACGGTGTGTTGCGAG
GTCCCGCTGGGGCCTGCAGTTGTTTTTGGAGGTGCTGTCGGGTGGTCGTG
TCTGGCGCTATCTACCATCATGTAATCTCGGCGCGGCACCTGGCCACCGC
GCTGCAGTCAAGTGGGACCACGGGCAGCTGCGTAGTAGAATCCGGATTTA
CTTGTGCAACCTGACTGTGTGTGGAGCAGCTTGATGGCCTGTCGATCAAC
TCGATGCAACGGCTCCGGCCGCCACCGTTACCGCGTGACGAGGAATCATC
TTATCTTAACTTAATTCGTATATCAACAGAGCACAGCTGTGCGTGTTTCT
CCTCATGTTTTATCAACAGAGCAGCTGCGCGTGTTGCTCTCCAGAGTCAG
TTTTGTGCGGCACCTGCTGCCGCAGCAATCGATCTTCTGACCTGGTCGAA
TCGCCCTCGCCCCGGCTCCTTCGCAGCTGCTGATGTACGCCAACACCGGC
TGGGTGGACAAGGCCTTCATCGAGTTCGTCATCCCTCACGCCCTGTGCCA
GGGCGGCGTCGTGCAGCTGCTGGCGGCCATCTGGTCCCTCGTCAGGGGCC
ACATGCTGGACGCCACGTTCCACATGCTCTGGGGGGGCTTCTGGCTCGCT
TGGGGGACGCTCCGCGTGCTGCGCCTGCAGGGCGTAACCTGGGGCCCTAC
CTCCCCCGACTTTGCCACCGCGCAGTGCCTCTTCCTCATGGAGTGGACCA
TTGTGGCGATCGTCATGTTCCTGGTGGCGCGGCACAAGCGCCCGTTTGCG
GTGCGCTTCGCGTTCGGCTCGCTCGCCGTCGCGCTCGCGCTCCTCGCGCT
GACGCCGTGGACGGCCGCCGTCGGCAAGATCGGCGCGTACGTCGGCATGC
TGTCGTCGTCGTCGTTCTTCTACGCGGGCGCCGCGCAGCTCATGTTCGAG
GTCAACAGCATACGCTGGTGGGGGATGAGCGCATGAGGGCGAGCGCTGCT
GCTGCTGCTGCTGCCGCGGTGCCCGCAGCGTACATACCCCCTTCCCCCCC
GCCCCCCCATTTGCCAAGTCTCGGTGAGGTGCGCATGCTGCAGGTTGCGT
GTGAAAAAATGTGGCCACGTTCCGCACACAGCGCCGTGCCTGGCCCTCCC
CCCCCCGGTGGTCGAGGTTTATCAGAGTAGAGGAACCCCTATGCATGCTC
CCACCCAAGTAGGGCAGCTCCCACCCACCCCACTTTGCTGCCCCCCCCTG
TCGCAACGGCAGAGTGAGCATGCCACCCCGACAGAGTCGATTCGTATGCG
TATTGCGTGCCCCGTGATTCGATGCCACGGGCGCAGACCAATGGCAGCCT
AGCACCGCTGGGCGCCAGTTGCGCTTGAATGGCAGTCCGCCCGTCCAGAG
CATGTCAACATTTTGAAATGCACTCCATGCTCTGAGTTGGCATCCGC
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Coding sequence (CDS) from alignment at Contig_20:212917..214663+

>mRNA_4063 ID=mRNA_4063|Name=jgi.p|Trimin1|38639|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_20:212917..214663+ (Tribonema minus UTEX_B_3156 )
ATGGAGACAGCCTTTGATGAGCTGGAAGGAGGCCCAGCCACGCTCAAGTT
TTCATCATCACGCAGCGTGCACAAGGCCTCCGCGGTCAGTGGGGCTGCAC
CAGTCTCCACGGTCGCACCGCCTCCATTTTCTCGTCGTGCCGAGCCGGCG
TGCAATGTGGTGGGCTTCATGGCTTGCGGTTTGACAGGCGTGCTGCTGAT
GTACGCCAACACCGGCTGGGTGGACAAGGCCTTCATCGAGTTCGTCATCC
CTCACGCCCTGTGCCAGGGCGGCGTCGTGCAGCTGCTGGCGGCCATCTGG
TCCCTCGTCAGGGGCCACATGCTGGACGCCACGTTCCACATGCTCTGGGG
GGGCTTCTGGCTCGCTTGGGGGACGCTCCGCGTGCTGCGCCTGCAGGGCG
TAACCTGGGGCCCTACCTCCCCCGACTTTGCCACCGCGCAGTGCCTCTTC
CTCATGGAGTGGACCATTGTGGCGATCGTCATGTTCCTGGTGGCGCGGCA
CAAGCGCCCGTTTGCGGTGCGCTTCGCGTTCGGCTCGCTCGCCGTCGCGC
TCGCGCTCCTCGCGCTGACGCCGTGGACGGCCGCCGTCGGCAAGATCGGC
GCGTACGTCGGCATGCTGTCGTCGTCGTCGTTCTTCTACGCGGGCGCCGC
GCAGCTCATGTTCGAGGTCAACAGCATACGCTGGTGGGGGATGAGCGCAT
GA
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