mRNA_11815 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149284
Unique NamemRNA_11815
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149284 vs. uniprot
Match: A0A836CP33_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP33_9STRA)

HSP 1 Score: 381 bits (979), Expect = 4.680e-134
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1 
Query:    1 FTFPENDLEIEVSPRARSIGIPALSEAECTPQLVTALDEFTRDFRTVVVGRYSDALVPRVARTLLPPPRYPIDAVTGNGEAVGDEEEVPEGTDSDTPEVRLLQQYCPTYSGTPSTYRKLPPHDLRALLGDRPSHFTWLKVDCNKLVFGVGEPEPLFCSLTMYRIEGKPTKKGFELDRRNSGRVSETF 561
            FTFPENDLEIEVSPRARSIGIPALSEAECTPQLVTALDEFTRDFRTVVVGRYSDALVPRVARTLLPPPRYPIDAVTGNGEAVGDEEEVPEGTDSDTPEVRLLQQYCPTYSGTPSTYRKLPPHDLRALLGDRPSHFTWLKVDCNKLVFGVGEPEPLFCSLTMYRIEGKPTKKGFELDRRNSGRVSETF
Sbjct:    1 FTFPENDLEIEVSPRARSIGIPALSEAECTPQLVTALDEFTRDFRTVVVGRYSDALVPRVARTLLPPPRYPIDAVTGNGEAVGDEEEVPEGTDSDTPEVRLLQQYCPTYSGTPSTYRKLPPHDLRALLGDRPSHFTWLKVDCNKLVFGVGEPEPLFCSLTMYRIEGKPTKKGFELDRRNSGRVSETF 187
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BLAST of jgi.p|Trimin1|149284 vs. uniprot
Match: D8LBX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX8_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 5.410e-44
Identity = 89/192 (46.35%), Postives = 110/192 (57.29%), Query Frame = 1 
Query:    1 FTFPENDLEIEVSPRARSIGIPALSEAECTPQLVTALDEFTRDFRTVVVGRYSDALVPRVARTLLPPPRYPIDAVTGNGEAVGDEEEVPEGTDSD-----TPEVRLLQQYCPTYSGTPSTYRKLPPHDLRALLGDRPSHFTWLKVDCNKLVFGVGEPEPLFCSLTMYRIEGKPTKKGFELDRRNSGRVSETF 561
            F FP NDLE+ ++PR R    P L+    T  L TA DEFTRD+  + +GR S   VP V      PP+YP D        V D+E+   GTD       + EVR+L  Y P Y G  STYRK P   L+ LL DRP+HF W+++    L F VG  EP+FCSLT+YRI  +  KKG E+D   SGRVSETF
Sbjct:   12 FIFPVNDLEVSIAPRGRPFQPPPLARGSATTFLATAYDEFTRDWVNLSIGRLSQKSVPCVKYRSEEPPQYPAD-----DHQVPDKEKFTVGTDDPEEQPGSKEVRVLHYYRPQYKGPRSTYRKTPDLKLQLLLLDRPAHFMWMEIAAQALTFKVGALEPVFCSLTLYRIVSRLGKKGAEMDLSRSGRVSETF 198
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149284 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CP33_9STRA4.680e-134100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LBX8_ECTSI5.410e-4446.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:218769..219329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149284|gw1.102.71.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSimilar to dedicator of cytokinesis
Ec32 orthologEc-20_003690.3
TranscriptId149606
TrackFilteredModels1
ProteinId149284
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149284gene_11815Tribonema minus UTEX_B_3156 geneContig_102 218769..219329 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11815_1exon_11815_1Tribonema minus UTEX_B_3156 exonContig_102 218769..219329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11815CDS_11815Tribonema minus UTEX_B_3156 CDSContig_102 218769..219329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149284Trimin1|149284|gw1.102.71.1Tribonema minus UTEX_B_3156 polypeptideContig_102 218769..219329 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11815 ID=mRNA_11815|Name=jgi.p|Trimin1|149284|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_102:218769..219329- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCACTTTCCCTGAAAATGATCTCGAGATAGAGGTCTCCCCTAGAGCTAG
GAGCATAGGCATCCCAGCGCTCTCCGAAGCGGAGTGCACACCTCAGCTAG
TGACCGCTCTGGATGAGTTCACTAGAGACTTCAGGACCGTCGTCGTGGGG
CGGTACTCCGATGCTTTGGTGCCTCGGGTCGCTCGAACTTTGTTGCCGCC
GCCACGCTATCCCATTGACGCGGTCACGGGCAATGGCGAGGCTGTCGGCG
ACGAGGAGGAGGTGCCTGAGGGCACTGATAGTGACACGCCAGAGGTGCGG
TTGCTGCAGCAGTACTGCCCAACCTACTCTGGCACACCAAGCACCTATCG
CAAGCTGCCTCCACATGACCTGCGCGCGCTGCTTGGAGACAGGCCCTCCC
ACTTCACGTGGCTCAAGGTGGACTGCAACAAGCTGGTGTTTGGGGTGGGG
GAGCCGGAGCCGCTGTTCTGCAGCCTGACCATGTACCGCATAGAGGGGAA
GCCCACCAAGAAGGGCTTCGAGCTGGACAGGAGGAACAGCGGACGCGTCA
GCGAGACGTTC
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protein sequence of jgi.p|Trimin1|149284

>Trimin1|149284|gw1.102.71.1 ID=Trimin1|149284|gw1.102.71.1|Name=jgi.p|Trimin1|149284|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
FTFPENDLEIEVSPRARSIGIPALSEAECTPQLVTALDEFTRDFRTVVVG
RYSDALVPRVARTLLPPPRYPIDAVTGNGEAVGDEEEVPEGTDSDTPEVR
LLQQYCPTYSGTPSTYRKLPPHDLRALLGDRPSHFTWLKVDCNKLVFGVG
EPEPLFCSLTMYRIEGKPTKKGFELDRRNSGRVSETF
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mRNA from alignment at Contig_102:218769..219329-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11815 ID=mRNA_11815|Name=jgi.p|Trimin1|149284|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_102:218769..219329- (Tribonema minus UTEX_B_3156 )
TTCACTTTCCCTGAAAATGATCTCGAGATAGAGGTCTCCCCTAGAGCTAG
GAGCATAGGCATCCCAGCGCTCTCCGAAGCGGAGTGCACACCTCAGCTAG
TGACCGCTCTGGATGAGTTCACTAGAGACTTCAGGACCGTCGTCGTGGGG
CGGTACTCCGATGCTTTGGTGCCTCGGGTCGCTCGAACTTTGTTGCCGCC
GCCACGCTATCCCATTGACGCGGTCACGGGCAATGGCGAGGCTGTCGGCG
ACGAGGAGGAGGTGCCTGAGGGCACTGATAGTGACACGCCAGAGGTGCGG
TTGCTGCAGCAGTACTGCCCAACCTACTCTGGCACACCAAGCACCTATCG
CAAGCTGCCTCCACATGACCTGCGCGCGCTGCTTGGAGACAGGCCCTCCC
ACTTCACGTGGCTCAAGGTGGACTGCAACAAGCTGGTGTTTGGGGTGGGG
GAGCCGGAGCCGCTGTTCTGCAGCCTGACCATGTACCGCATAGAGGGGAA
GCCCACCAAGAAGGGCTTCGAGCTGGACAGGAGGAACAGCGGACGCGTCA
GCGAGACGTTC
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Coding sequence (CDS) from alignment at Contig_102:218769..219329-

>mRNA_11815 ID=mRNA_11815|Name=jgi.p|Trimin1|149284|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_102:218769..219329- (Tribonema minus UTEX_B_3156 )
TTCACTTTCCCTGAAAATGATCTCGAGATAGAGGTCTCCCCTAGAGCTAG
GAGCATAGGCATCCCAGCGCTCTCCGAAGCGGAGTGCACACCTCAGCTAG
TGACCGCTCTGGATGAGTTCACTAGAGACTTCAGGACCGTCGTCGTGGGG
CGGTACTCCGATGCTTTGGTGCCTCGGGTCGCTCGAACTTTGTTGCCGCC
GCCACGCTATCCCATTGACGCGGTCACGGGCAATGGCGAGGCTGTCGGCG
ACGAGGAGGAGGTGCCTGAGGGCACTGATAGTGACACGCCAGAGGTGCGG
TTGCTGCAGCAGTACTGCCCAACCTACTCTGGCACACCAAGCACCTATCG
CAAGCTGCCTCCACATGACCTGCGCGCGCTGCTTGGAGACAGGCCCTCCC
ACTTCACGTGGCTCAAGGTGGACTGCAACAAGCTGGTGTTTGGGGTGGGG
GAGCCGGAGCCGCTGTTCTGCAGCCTGACCATGTACCGCATAGAGGGGAA
GCCCACCAAGAAGGGCTTCGAGCTGGACAGGAGGAACAGCGGACGCGTCA
GCGAGACGTTC
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