mRNA_662 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156945
Unique NamemRNA_662
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156945 vs. uniprot
Match: A0A836CK20_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK20_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.170e-13
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 MLSHVKAVHEGIKDIECEHPDCSRTFSDQGNMLXXXXXXXXXXXXXXCTD 150
            MLSHVKAVHEGIKDIECEHPDCSRTFSDQGNMLXXXXXXXXXXXXXXCTD
Sbjct:    1 MLSHVKAVHEGIKDIECEHPDCSRTFSDQGNMLXXXXXXXXXXXXXXCTD 50
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156945 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CK20_9STRA3.170e-13100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1071745..1072575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156945|e_gw1.2.151.1
Hectar predicted targeting categoryother localisation
TranscriptId157267
TrackFilteredModels1
ProteinId156945
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156945gene_662Tribonema minus UTEX_B_3156 geneContig_2 1071745..1072575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_662_1exon_662_1Tribonema minus UTEX_B_3156 exonContig_2 1071745..1072575 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_662CDS_662Tribonema minus UTEX_B_3156 CDSContig_2 1071745..1072575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156945Trimin1|156945|e_gw1.2.151.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1071745..1072575 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_662 ID=mRNA_662|Name=jgi.p|Trimin1|156945|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_2:1071745..1072575+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTAAGCCACGTCAAGGCAGTTCACGAAGGCATCAAAGACATCGAGTG
TGAGCATCCTGACTGCAGCCGGACATTTAGTGATCAAGGAAACATGCTGA
GACACTTCAAGGCGGTCCATGAAGGCATCAAGGATTTCCAGTGTACTGAC
TGCGGCAAGATGTTCGACACCAAAAATCACATGCTTCAGCATGTCAAGGC
GGTGCATGATGGCGTCAAAGATGTGCAGTGTACTGTCTGTGAAAAGATGT
TCATCACCAAGCAAGTCATGCTTCAGCACGTCAAGGCGGTCCATGAAGGC
ATCAAGGATTTCCAGTGTACTGACTGCGACAAGATGTTCGACACCAAGAA
TCACATGCTTCAGCACGTCAAGGCGGTGCATGATGGCGTCAAAGATGTGC
AGTGCACTGAATGTGACAAGATGTTCAGCACCGGAGCTTACATGCGCAAG
CACGTCAAGGTGGTACACGATGGTGTCAAAGAGGTGCAGTGTACTGAATG
CGAAAAAATGTTCACCACCAAGCAAGTCATGGTTAAGCACGTCAAGGCGA
TCCACGACTGCATCAAAGACGTTAAGTGCGACTACCCTGACTGCAGCCAG
ACGTTTAGCGATAAATGGAACATGCAGAAGCATGTAAAGGCGGTTCATGA
AGGCATCAAAGACTTCGAATGTGACCATTCAGACTGCAACAAGAAGTTCA
GCTCAAAAACCAACATGTTGCAACACGTCAAGGCAGTCCACAACGGCATC
AAAGACGTTCATTGTACTACGTGCAACAAAACGTTTAGTACAGAAAGCGA
TATGCGCAAGCACGTCAAGGCGGTACATGAC
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protein sequence of jgi.p|Trimin1|156945

>Trimin1|156945|e_gw1.2.151.1 ID=Trimin1|156945|e_gw1.2.151.1|Name=jgi.p|Trimin1|156945|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=277bp
MLSHVKAVHEGIKDIECEHPDCSRTFSDQGNMLRHFKAVHEGIKDFQCTD
CGKMFDTKNHMLQHVKAVHDGVKDVQCTVCEKMFITKQVMLQHVKAVHEG
IKDFQCTDCDKMFDTKNHMLQHVKAVHDGVKDVQCTECDKMFSTGAYMRK
HVKVVHDGVKEVQCTECEKMFTTKQVMVKHVKAIHDCIKDVKCDYPDCSQ
TFSDKWNMQKHVKAVHEGIKDFECDHSDCNKKFSSKTNMLQHVKAVHNGI
KDVHCTTCNKTFSTESDMRKHVKAVHD
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mRNA from alignment at Contig_2:1071745..1072575+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_662 ID=mRNA_662|Name=jgi.p|Trimin1|156945|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=831bp|location=Sequence derived from alignment at Contig_2:1071745..1072575+ (Tribonema minus UTEX_B_3156 )
ATGCTAAGCCACGTCAAGGCAGTTCACGAAGGCATCAAAGACATCGAGTG
TGAGCATCCTGACTGCAGCCGGACATTTAGTGATCAAGGAAACATGCTGA
GACACTTCAAGGCGGTCCATGAAGGCATCAAGGATTTCCAGTGTACTGAC
TGCGGCAAGATGTTCGACACCAAAAATCACATGCTTCAGCATGTCAAGGC
GGTGCATGATGGCGTCAAAGATGTGCAGTGTACTGTCTGTGAAAAGATGT
TCATCACCAAGCAAGTCATGCTTCAGCACGTCAAGGCGGTCCATGAAGGC
ATCAAGGATTTCCAGTGTACTGACTGCGACAAGATGTTCGACACCAAGAA
TCACATGCTTCAGCACGTCAAGGCGGTGCATGATGGCGTCAAAGATGTGC
AGTGCACTGAATGTGACAAGATGTTCAGCACCGGAGCTTACATGCGCAAG
CACGTCAAGGTGGTACACGATGGTGTCAAAGAGGTGCAGTGTACTGAATG
CGAAAAAATGTTCACCACCAAGCAAGTCATGGTTAAGCACGTCAAGGCGA
TCCACGACTGCATCAAAGACGTTAAGTGCGACTACCCTGACTGCAGCCAG
ACGTTTAGCGATAAATGGAACATGCAGAAGCATGTAAAGGCGGTTCATGA
AGGCATCAAAGACTTCGAATGTGACCATTCAGACTGCAACAAGAAGTTCA
GCTCAAAAACCAACATGTTGCAACACGTCAAGGCAGTCCACAACGGCATC
AAAGACGTTCATTGTACTACGTGCAACAAAACGTTTAGTACAGAAAGCGA
TATGCGCAAGCACGTCAAGGCGGTACATGAC
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Coding sequence (CDS) from alignment at Contig_2:1071745..1072575+

>mRNA_662 ID=mRNA_662|Name=jgi.p|Trimin1|156945|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=831bp|location=Sequence derived from alignment at Contig_2:1071745..1072575+ (Tribonema minus UTEX_B_3156 )
ATGCTAAGCCACGTCAAGGCAGTTCACGAAGGCATCAAAGACATCGAGTG
TGAGCATCCTGACTGCAGCCGGACATTTAGTGATCAAGGAAACATGCTGA
GACACTTCAAGGCGGTCCATGAAGGCATCAAGGATTTCCAGTGTACTGAC
TGCGGCAAGATGTTCGACACCAAAAATCACATGCTTCAGCATGTCAAGGC
GGTGCATGATGGCGTCAAAGATGTGCAGTGTACTGTCTGTGAAAAGATGT
TCATCACCAAGCAAGTCATGCTTCAGCACGTCAAGGCGGTCCATGAAGGC
ATCAAGGATTTCCAGTGTACTGACTGCGACAAGATGTTCGACACCAAGAA
TCACATGCTTCAGCACGTCAAGGCGGTGCATGATGGCGTCAAAGATGTGC
AGTGCACTGAATGTGACAAGATGTTCAGCACCGGAGCTTACATGCGCAAG
CACGTCAAGGTGGTACACGATGGTGTCAAAGAGGTGCAGTGTACTGAATG
CGAAAAAATGTTCACCACCAAGCAAGTCATGGTTAAGCACGTCAAGGCGA
TCCACGACTGCATCAAAGACGTTAAGTGCGACTACCCTGACTGCAGCCAG
ACGTTTAGCGATAAATGGAACATGCAGAAGCATGTAAAGGCGGTTCATGA
AGGCATCAAAGACTTCGAATGTGACCATTCAGACTGCAACAAGAAGTTCA
GCTCAAAAACCAACATGTTGCAACACGTCAAGGCAGTCCACAACGGCATC
AAAGACGTTCATTGTACTACGTGCAACAAAACGTTTAGTACAGAAAGCGA
TATGCGCAAGCACGTCAAGGCGGTACATGAC
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