mRNA_644 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156934
Unique NamemRNA_644
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.860e-79
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGERS
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 238 bits (607), Expect = 6.520e-79
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGERS
Sbjct:    8 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 238 bits (606), Expect = 7.590e-79
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKK HRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGERS
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 238 bits (607), Expect = 8.530e-79
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGERS
Sbjct:   16 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 239 bits (610), Expect = 2.130e-78
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGERS
Sbjct:   75 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 4.390e-78
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTG +APRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGERS
Sbjct:    2 ARTKQTARKSTGRQAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: A7RJG4_NEMVE (Predicted protein n=6 Tax=Eumetazoa TaxID=6072 RepID=A7RJG4_NEMVE)

HSP 1 Score: 235 bits (600), Expect = 6.240e-78
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKSTELLIRKLPFQRL+REIAQDFK+DLRFQ SA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLIREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: A0A6J0UZS0_9SAUR (Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A6J0UZS0_9SAUR)

HSP 1 Score: 235 bits (599), Expect = 8.860e-78
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQ SA++ALQEA+EAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: E1ZFV1_CHLVA (Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1ZFV1_CHLVA)

HSP 1 Score: 234 bits (598), Expect = 1.260e-77
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SA+LALQEAAEAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Match: A0A183C227_GLOPA (Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=A0A183C227_GLOPA)

HSP 1 Score: 234 bits (598), Expect = 1.260e-77
Identity = 127/135 (94.07%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYLVGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS 405
            ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQ SA+LALQEA+EAYLVGLFEDTNLCAIHAKRVTI+PKDI LARRIRGER+
Sbjct:    2 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERT 136
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156934 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W4GZ05_9STRA1.860e-7996.30Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A6V1P6C6_HETAK6.520e-7995.56Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A1Z5K8H0_FISSO7.590e-7995.56Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A7S1BJN3_9STRA8.530e-7995.56Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC2.130e-7896.30Histone domain-containing protein n=8 Tax=Bacillar... [more]
D7G4I9_ECTSI4.390e-7895.56Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A7RJG4_NEMVE6.240e-7894.07Predicted protein n=6 Tax=Eumetazoa TaxID=6072 Rep... [more]
A0A6J0UZS0_9SAUR8.860e-7894.07Histone H3 n=36 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
E1ZFV1_CHLVA1.260e-7794.07Histone H3 n=11 Tax=Eukaryota TaxID=2759 RepID=E1Z... [more]
A0A183C227_GLOPA1.260e-7794.07Histone H3 n=2 Tax=Tylenchoidea TaxID=33284 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:995042..995449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156934|e_gw1.2.147.1
BRITEko00000,ko00001,ko03036,ko04147
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
KEGG koko:K11253
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
Descriptionprotein heterodimerization activity
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Evalue1.07e-80
Seed ortholog2880.D7FWI7
Hectar predicted targeting categoryother localisation
TranscriptId157256
TrackFilteredModels1
ProteinId156934
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156934gene_644Tribonema minus UTEX_B_3156 geneContig_2 995042..995449 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_644_1exon_644_1Tribonema minus UTEX_B_3156 exonContig_2 995042..995449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_644CDS_644Tribonema minus UTEX_B_3156 CDSContig_2 995042..995449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156934Trimin1|156934|e_gw1.2.147.1Tribonema minus UTEX_B_3156 polypeptideContig_2 995042..995449 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_644 ID=mRNA_644|Name=jgi.p|Trimin1|156934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_2:995042..995449+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCTCGCACGAAGCAGACAGCACGCAAAAGCACTGGGGGAAAGGCGCCCCG
CAAGCAATTAGCAACCAAGGCCGCTAGGAAGAGCGCACCAGCGACCGGCG
GTGTCAAGAAGGCACACCGTTACCGCCCCGGAACCGTGGCGCTCCGTGAG
ATCCGTCGTTACCAGAAGTCTACGGAGCTATTGATCCGCAAGCTGCCGTT
CCAGCGTCTCGTGCGCGAGATCGCACAGGACTTCAAGAGTGACCTTAGGT
TCCAGGGCAGCGCGATTCTTGCGCTGCAGGAGGCCGCCGAGGCATACCTG
GTCGGTCTGTTTGAGGACACGAACCTGTGCGCCATTCACGCCAAGCGCGT
AACGATACTTCCCAAAGATATCGCGCTCGCCCGGCGTATAAGAGGGGAAA
GGTCGTGA
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protein sequence of jgi.p|Trimin1|156934

>Trimin1|156934|e_gw1.2.147.1 ID=Trimin1|156934|e_gw1.2.147.1|Name=jgi.p|Trimin1|156934|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKAHRYRPGTVALRE
IRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAILALQEAAEAYL
VGLFEDTNLCAIHAKRVTILPKDIALARRIRGERS*
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mRNA from alignment at Contig_2:995042..995449+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_644 ID=mRNA_644|Name=jgi.p|Trimin1|156934|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_2:995042..995449+ (Tribonema minus UTEX_B_3156 )
GCTCGCACGAAGCAGACAGCACGCAAAAGCACTGGGGGAAAGGCGCCCCG
CAAGCAATTAGCAACCAAGGCCGCTAGGAAGAGCGCACCAGCGACCGGCG
GTGTCAAGAAGGCACACCGTTACCGCCCCGGAACCGTGGCGCTCCGTGAG
ATCCGTCGTTACCAGAAGTCTACGGAGCTATTGATCCGCAAGCTGCCGTT
CCAGCGTCTCGTGCGCGAGATCGCACAGGACTTCAAGAGTGACCTTAGGT
TCCAGGGCAGCGCGATTCTTGCGCTGCAGGAGGCCGCCGAGGCATACCTG
GTCGGTCTGTTTGAGGACACGAACCTGTGCGCCATTCACGCCAAGCGCGT
AACGATACTTCCCAAAGATATCGCGCTCGCCCGGCGTATAAGAGGGGAAA
GGTCGTGA
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Coding sequence (CDS) from alignment at Contig_2:995042..995449+

>mRNA_644 ID=mRNA_644|Name=jgi.p|Trimin1|156934|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_2:995042..995449+ (Tribonema minus UTEX_B_3156 )
GCTCGCACGAAGCAGACAGCACGCAAAAGCACTGGGGGAAAGGCGCCCCG
CAAGCAATTAGCAACCAAGGCCGCTAGGAAGAGCGCACCAGCGACCGGCG
GTGTCAAGAAGGCACACCGTTACCGCCCCGGAACCGTGGCGCTCCGTGAG
ATCCGTCGTTACCAGAAGTCTACGGAGCTATTGATCCGCAAGCTGCCGTT
CCAGCGTCTCGTGCGCGAGATCGCACAGGACTTCAAGAGTGACCTTAGGT
TCCAGGGCAGCGCGATTCTTGCGCTGCAGGAGGCCGCCGAGGCATACCTG
GTCGGTCTGTTTGAGGACACGAACCTGTGCGCCATTCACGCCAAGCGCGT
AACGATACTTCCCAAAGATATCGCGCTCGCCCGGCGTATAAGAGGGGAAA
GGTCGTGA
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