mRNA_796 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156916
Unique NamemRNA_796
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A835Z4T2_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T2_9STRA)

HSP 1 Score: 266 bits (681), Expect = 2.680e-90
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 MTRSSLLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETKRRDEAS 405
            MTRSSLLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETKRRDEAS
Sbjct:    1 MTRSSLLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETKRRDEAS 135          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A836CI72_9STRA (CheY-like superfamily protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI72_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.360e-37
Identity = 64/122 (52.46%), Postives = 85/122 (69.67%), Query Frame = 1
Query:   22 VLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETK 387
            VL++EDY LSA+YM QALKLC+C  + IA SGE+A+ +    GPFDVVFVDL+M GMGG+ C+  L+ M     W    VAMS++E L+  A+ AGAD+FL+KL HPVR++  I+  V   K
Sbjct:   11 VLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMR----WSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNK 128          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A836CPC2_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 2.130e-35
Identity = 66/114 (57.89%), Postives = 82/114 (71.93%), Query Frame = 1
Query:   25 LLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIII 366
            +L+EDY LSA YM QAL++C C +V  A +GE AI +    GPFDVVFVDLVM GMGG+EC++ LR ME  NGW Q  VAMS+D  L   AL AGAD F++KLA PVR++  +I
Sbjct:    1 MLVEDYQLSALYMSQALRMCGCTDVHAALNGECAIELARVKGPFDVVFVDLVMKGMGGVECIRALRSMEHDNGWTQCIVAMSADAELSSSALAAGADRFMHKLAQPVRDIFAMI 114          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A7V3SJR1_9BACT (Histidine kinase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3SJR1_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 7.300e-10
Identity = 42/126 (33.33%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   10 SSLLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSD--EHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDE 381
            S + VLL+ED  ++ K  +  LK   C  V +A++G EA+ +T KH  +D+VF+D+ M  M G+E  + +R+ E  +G     VAM++   E  ++  L AG D++L K   PV+ + ++ ++V++
Sbjct:  668 SGVRVLLVEDNEVNRKLALHMLKRLGCS-VEVATNGREAVELTSKHA-YDLVFMDIQMPEMDGIEATRLIRERERSSGKHLPIVAMTAHAMEGDRERCLAAGMDDYLSK---PVK-IDVLARMVEK 787          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A2G6MUH3_9DELT (Histidine kinase n=1 Tax=Desulfobacterales bacterium TaxID=2044940 RepID=A0A2G6MUH3_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 1.320e-9
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   22 VLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMS--SDEHLKQDALDAGADEFLYK 330
            +LLIED         +AL   N   VV+A +GEEA+ I + H   D+V +D++M G+GG+EC+K LRQ+ +      + +A S  S +   Q+ L  GAD+FL K
Sbjct:  594 ILLIEDEKSLRSLTRKALIQYNYN-VVVAKNGEEALEIFKAHPDIDLVILDIIMPGIGGIECLKALRQISSDL----KIIATSGYSGKESSQNVLKLGADQFLPK 693          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A850KHY2_9HYPH (Histidine kinase n=1 Tax=Methylocystaceae bacterium TaxID=2052174 RepID=A0A850KHY2_9HYPH)

HSP 1 Score: 64.7 bits (156), Expect = 1.830e-9
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    4 TRSSLLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSS--DEHLKQDALDAGADEFLYKLAHP 342
            T   L V+L+ED  ++++     LK  N  +V I SSGEEAI   E H  FD++ +D+ M G+GG+E +K +RQ+E ++  R   + +S+  D H  +    AGAD FL K   P
Sbjct:  530 TIQGLNVMLVEDNNVNSEVAEGFLKRSN-HKVTILSSGEEAIEYFE-HYKFDLILMDVRMPGIGGVEAVKIIRQLERKSNKRTPIIFLSALADRHELETYFAAGADGFLSKPFSP 642          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A507EVF2_9FUNG (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507EVF2_9FUNG)

HSP 1 Score: 63.5 bits (153), Expect = 4.650e-9
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   22 VLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQD----ALDAGADEFLYK 330
            VL++ED  L+ K M +   L     V++AS+G EA+ + E     D+VF+D+VM GMGGLEC K++RQ E      +R   +    + +QD    A + G DE+L K
Sbjct:  724 VLVVEDNILNQKIMYRF--LAPFYRVLLASNGIEALEVYEDA---DLVFMDIVMPGMGGLECTKEIRQREREQKGCKRVPIVGLSGNARQDQISRAFEVGMDEYLTK 825          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A518KUZ8_9BACT (Response regulator protein VraR n=1 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518KUZ8_9BACT)

HSP 1 Score: 61.6 bits (148), Expect = 7.120e-9
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = 1
Query:   22 VLLIEDYALSAKYMMQALKLCNCEEVVI-ASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQD---ALDAGADEFLYKLAHPVREVGIII 366
            +LL++D+A+    +   L      +VV  A SGE A+ + ++H P DV  +D+ M GMGGLEC+++L+Q           V M S   L+ D   A+D GAD ++ K A P   V  I+
Sbjct:   12 LLLVDDHAVMRAGLANMLNAREEFDVVAEADSGESALVLHQQHDP-DVTLLDIAMPGMGGLECLRRLKQQSP-----DASVLMLSSSELEHDMHHAIDLGADGYITKTAMPPELVASIL 124          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A7C6YRV9_9FIRM (Stage 0 sporulation protein A homolog n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7C6YRV9_9FIRM)

HSP 1 Score: 58.9 bits (141), Expect = 1.620e-8
Identity = 37/122 (30.33%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   22 VLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETK 387
            VLL +D  L  K + + +     E V+ AS+G+EA+ + +KH P  ++F+D+VM  M G+E +K+++++ T+   +   +  S  +   + AL+ GA +F+ K   P +E  I+  ++D  K
Sbjct:    8 VLLCDDSMLVRKQLKEIITDAGVEIVLEASNGKEALPLIKKHNP-QIIFLDIVMPVMDGIETLKEIKKLHTQT--KVVMITSSGTQTYLKTALEEGAYDFIQK---PWKETQIL-SIIDRLK 122          
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Match: A0A5C5Z7Z1_9BACT (Transcriptional regulatory protein LiaR n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5Z7Z1_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.920e-8
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 1
Query:   22 VLLIEDYALSAKYMMQALKLCNCEEVVI-ASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREV-GIIIKLVDETKRRDEAS 405
            +LL++D+A+    +   L      EVV  A  GE A+ + ++H P D+  +D+VM GM G+EC++QL+Q  T    +   ++ S  +H   DA+ AGA  F+ K A P   V  I++    E    DE S
Sbjct:   12 LLLVDDHAVMRSGLANMLNARPEFEVVAGADDGESALRLYQEHLP-DITLLDVVMPGMNGIECLRQLKQ--TYPDAKVLMLSSSDLDHDFHDAIQAGAGGFIAKTAKPSELVKAILLVAKGEKSIGDEVS 138          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156916 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4T2_9STRA2.680e-90100.00CheY-like superfamily protein n=1 Tax=Tribonema mi... [more]
A0A836CI72_9STRA6.360e-3752.46CheY-like superfamily protein n=2 Tax=Tribonema mi... [more]
A0A836CPC2_9STRA2.130e-3557.89Response regulatory domain-containing protein n=1 ... [more]
A0A7V3SJR1_9BACT7.300e-1033.33Histidine kinase n=1 Tax=Armatimonadetes bacterium... [more]
A0A2G6MUH3_9DELT1.320e-939.05Histidine kinase n=1 Tax=Desulfobacterales bacteri... [more]
A0A850KHY2_9HYPH1.830e-938.26Histidine kinase n=1 Tax=Methylocystaceae bacteriu... [more]
A0A507EVF2_9FUNG4.650e-938.32Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A518KUZ8_9BACT7.120e-935.29Response regulator protein VraR n=1 Tax=Planctomyc... [more]
A0A7C6YRV9_9FIRM1.620e-830.33Stage 0 sporulation protein A homolog n=1 Tax=Clos... [more]
A0A5C5Z7Z1_9BACT1.920e-833.85Transcriptional regulatory protein LiaR n=1 Tax=Pl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1457902..1458309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156916|e_gw1.2.7.1
BRITEko00000,ko00001,ko00002,ko02022,ko02035
KEGG ModuleM00506
KEGG Pathwayko02020,ko02030,map02020,map02030
KEGG koko:K03413
DescriptioncheY-homologous receiver domain
COG categoryT
Max annot lvl204432|Acidobacteriia
EggNOG OGsCOG0745@1|root,COG0745@2|Bacteria,3Y5MN@57723|Acidobacteria,2JJW3@204432|Acidobacteriia
Evalue2.26e-12
Seed ortholog278963.ATWD01000002_gene876
Hectar predicted targeting categorysignal peptide
TranscriptId157238
TrackFilteredModels1
ProteinId156916
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156916gene_796Tribonema minus UTEX_B_3156 geneContig_2 1457902..1458309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_796_1exon_796_1Tribonema minus UTEX_B_3156 exonContig_2 1457902..1458309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_796CDS_796Tribonema minus UTEX_B_3156 CDSContig_2 1457902..1458309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156916Trimin1|156916|e_gw1.2.7.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1457902..1458309 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_796 ID=mRNA_796|Name=jgi.p|Trimin1|156916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_2:1457902..1458309- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGATCATCTCTTCTCGTTCTTTTGATTGAAGATTACGCCCTCAG
TGCCAAATACATGATGCAAGCACTGAAACTGTGCAATTGTGAGGAAGTCG
TCATCGCTTCCAGCGGTGAGGAGGCCATACACATAACGGAGAAGCACGGG
CCTTTTGATGTGGTGTTTGTGGACTTGGTGATGAGCGGCATGGGAGGCTT
GGAGTGCATGAAACAGTTGCGGCAGATGGAGACACGAAATGGGTGGAGGC
AGAGGTTTGTCGCCATGAGTTCGGATGAGCACCTCAAGCAGGACGCGCTT
GATGCTGGCGCTGACGAGTTCCTGTACAAACTAGCACACCCAGTGCGTGA
AGTAGGCATCATCATCAAACTAGTGGATGAGACCAAGCGGCGCGATGAAG
CCTCCTGA
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protein sequence of jgi.p|Trimin1|156916

>Trimin1|156916|e_gw1.2.7.1 ID=Trimin1|156916|e_gw1.2.7.1|Name=jgi.p|Trimin1|156916|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
MTRSSLLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHG
PFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDAL
DAGADEFLYKLAHPVREVGIIIKLVDETKRRDEAS*
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mRNA from alignment at Contig_2:1457902..1458309-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_796 ID=mRNA_796|Name=jgi.p|Trimin1|156916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_2:1457902..1458309- (Tribonema minus UTEX_B_3156 )
ATGACAAGATCATCTCTTCTCGTTCTTTTGATTGAAGATTACGCCCTCAG TGCCAAATACATGATGCAAGCACTGAAACTGTGCAATTGTGAGGAAGTCG TCATCGCTTCCAGCGGTGAGGAGGCCATACACATAACGGAGAAGCACGGG CCTTTTGATGTGGTGTTTGTGGACTTGGTGATGAGCGGCATGGGAGGCTT GGAGTGCATGAAACAGTTGCGGCAGATGGAGACACGAAATGGGTGGAGGC AGAGGTTTGTCGCCATGAGTTCGGATGAGCACCTCAAGCAGGACGCGCTT GATGCTGGCGCTGACGAGTTCCTGTACAAACTAGCACACCCAGTGCGTGA AGTAGGCATCATCATCAAACTAGTGGATGAGACCAAGCGGCGCGATGAAG CCTCCTGA
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Coding sequence (CDS) from alignment at Contig_2:1457902..1458309-

>mRNA_796 ID=mRNA_796|Name=jgi.p|Trimin1|156916|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_2:1457902..1458309- (Tribonema minus UTEX_B_3156 )
ATGACAAGATCATCTCTTCTCGTTCTTTTGATTGAAGATTACGCCCTCAG
TGCCAAATACATGATGCAAGCACTGAAACTGTGCAATTGTGAGGAAGTCG
TCATCGCTTCCAGCGGTGAGGAGGCCATACACATAACGGAGAAGCACGGG
CCTTTTGATGTGGTGTTTGTGGACTTGGTGATGAGCGGCATGGGAGGCTT
GGAGTGCATGAAACAGTTGCGGCAGATGGAGACACGAAATGGGTGGAGGC
AGAGGTTTGTCGCCATGAGTTCGGATGAGCACCTCAAGCAGGACGCGCTT
GATGCTGGCGCTGACGAGTTCCTGTACAAACTAGCACACCCAGTGCGTGA
AGTAGGCATCATCATCAAACTAGTGGATGAGACCAAGCGGCGCGATGAAG
CCTCCTGA
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