mRNA_729 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156905
Unique NamemRNA_729
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156905 vs. uniprot
Match: A0A835Z4P0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P0_9STRA)

HSP 1 Score: 332 bits (852), Expect = 1.830e-115
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 
Query:    1 MSDSIRRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWLPDDTLITSTFTVDTAIANHPTQPSSKRNMPPRPFVKHRPRELEKLNFS 489
            MSDSIRRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWLPDDTLITSTFTVDTAIANHPTQPSSKRNMPPRPFVKHRPRELEKLNFS
Sbjct:    1 MSDSIRRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWLPDDTLITSTFTVDTAIANHPTQPSSKRNMPPRPFVKHRPRELEKLNFS 163
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BLAST of jgi.p|Trimin1|156905 vs. uniprot
Match: A0A835Z809_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z809_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.100e-48
Identity = 71/110 (64.55%), Postives = 91/110 (82.73%), Query Frame = 1 
Query:   16 RRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWL 345
            RR  LE  L +QGL +R DS LCRAYI G L+++YTPELI+FICG+HKYLYEYTDY  +C++I+PR+ARMLAP++G YE AL Y KK+E P++KAE+L+K+GLP  WPWL
Sbjct:    9 RRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETLSKYGLPEIWPWL 118
[Close]
BLAST of jgi.p|Trimin1|156905 vs. uniprot
Match: A0A835ZBD3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 7.280e-42
Identity = 64/110 (58.18%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   16 RRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICGVHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKAESLAKFGLPSTWPWL 345
            RR  LE  L A GL +R DS LCR YI  +L+  YTP++IAFICG+HKYLYE TDY   C++ + R+ARMLAP++G YE+AL Y KK+E P+LKAE+L+++G+P  WPWL
Sbjct:    1 RRTVLEAALSAHGLTIRPDSGLCRGYIHNTLEPHYTPDVIAFICGLHKYLYECTDYGAWCSDTILRLARMLAPSMGSYESALTYAKKHEVPILKAETLSEYGMPDVWPWL 110
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156905 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z4P0_9STRA1.830e-115100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z809_9STRA2.100e-4864.55Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZBD3_9STRA7.280e-4258.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1263133..1263624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156905|e_gw1.2.297.1
Hectar predicted targeting categoryother localisation
TranscriptId157227
TrackFilteredModels1
ProteinId156905
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156905gene_729Tribonema minus UTEX_B_3156 geneContig_2 1263133..1263624 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_729_1exon_729_1Tribonema minus UTEX_B_3156 exonContig_2 1263133..1263624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_729CDS_729Tribonema minus UTEX_B_3156 CDSContig_2 1263133..1263624 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156905Trimin1|156905|e_gw1.2.297.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1263133..1263624 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_729 ID=mRNA_729|Name=jgi.p|Trimin1|156905|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_2:1263133..1263624+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGACTCGATTCGACGCCAAGAGCTCGAAGACGTACTCAAGGCACA
GGGACTGGACCTCAGATCTGATTCCGCCCTGTGTAGAGCGTACATATGTG
GCTCGCTTGACTCATTTTATACTCCGGAGCTCATCGCTTTCATATGTGGC
GTTCACAAGTATCTTTACGAATACACTGACTACGCTCAAAAGTGCGCCGA
GATTCTGCCTCGTGTAGCGCGAATGCTTGCCCCGGCCCTGGGTGGTTACG
AAAACGCGTTAGTTTACACCAAGAAGTACGAAACACCGATGCTCAAAGCA
GAGAGTCTGGCGAAGTTCGGCTTACCAAGCACATGGCCGTGGCTGCCTGA
CGACACGCTCATCACGTCAACCTTCACAGTCGATACAGCGATTGCCAATC
ATCCGACTCAGCCTTCAAGCAAGAGAAATATGCCGCCAAGACCTTTCGTA
AAACACCGTCCGCGTGAACTTGAAAAATTGAACTTTTCATGA
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protein sequence of jgi.p|Trimin1|156905

>Trimin1|156905|e_gw1.2.297.1 ID=Trimin1|156905|e_gw1.2.297.1|Name=jgi.p|Trimin1|156905|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=164bp
MSDSIRRQELEDVLKAQGLDLRSDSALCRAYICGSLDSFYTPELIAFICG
VHKYLYEYTDYAQKCAEILPRVARMLAPALGGYENALVYTKKYETPMLKA
ESLAKFGLPSTWPWLPDDTLITSTFTVDTAIANHPTQPSSKRNMPPRPFV
KHRPRELEKLNFS*
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mRNA from alignment at Contig_2:1263133..1263624+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_729 ID=mRNA_729|Name=jgi.p|Trimin1|156905|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=492bp|location=Sequence derived from alignment at Contig_2:1263133..1263624+ (Tribonema minus UTEX_B_3156 )
ATGTCGGACTCGATTCGACGCCAAGAGCTCGAAGACGTACTCAAGGCACA
GGGACTGGACCTCAGATCTGATTCCGCCCTGTGTAGAGCGTACATATGTG
GCTCGCTTGACTCATTTTATACTCCGGAGCTCATCGCTTTCATATGTGGC
GTTCACAAGTATCTTTACGAATACACTGACTACGCTCAAAAGTGCGCCGA
GATTCTGCCTCGTGTAGCGCGAATGCTTGCCCCGGCCCTGGGTGGTTACG
AAAACGCGTTAGTTTACACCAAGAAGTACGAAACACCGATGCTCAAAGCA
GAGAGTCTGGCGAAGTTCGGCTTACCAAGCACATGGCCGTGGCTGCCTGA
CGACACGCTCATCACGTCAACCTTCACAGTCGATACAGCGATTGCCAATC
ATCCGACTCAGCCTTCAAGCAAGAGAAATATGCCGCCAAGACCTTTCGTA
AAACACCGTCCGCGTGAACTTGAAAAATTGAACTTTTCATGA
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Coding sequence (CDS) from alignment at Contig_2:1263133..1263624+

>mRNA_729 ID=mRNA_729|Name=jgi.p|Trimin1|156905|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=492bp|location=Sequence derived from alignment at Contig_2:1263133..1263624+ (Tribonema minus UTEX_B_3156 )
ATGTCGGACTCGATTCGACGCCAAGAGCTCGAAGACGTACTCAAGGCACA
GGGACTGGACCTCAGATCTGATTCCGCCCTGTGTAGAGCGTACATATGTG
GCTCGCTTGACTCATTTTATACTCCGGAGCTCATCGCTTTCATATGTGGC
GTTCACAAGTATCTTTACGAATACACTGACTACGCTCAAAAGTGCGCCGA
GATTCTGCCTCGTGTAGCGCGAATGCTTGCCCCGGCCCTGGGTGGTTACG
AAAACGCGTTAGTTTACACCAAGAAGTACGAAACACCGATGCTCAAAGCA
GAGAGTCTGGCGAAGTTCGGCTTACCAAGCACATGGCCGTGGCTGCCTGA
CGACACGCTCATCACGTCAACCTTCACAGTCGATACAGCGATTGCCAATC
ATCCGACTCAGCCTTCAAGCAAGAGAAATATGCCGCCAAGACCTTTCGTA
AAACACCGTCCGCGTGAACTTGAAAAATTGAACTTTTCATGA
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