mRNA_655 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156846
Unique NamemRNA_655
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A835Z7E0_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7E0_9STRA)

HSP 1 Score: 507 bits (1305), Expect = 1.410e-181
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD
Sbjct:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 252
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A836CHH8_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHH8_9STRA)

HSP 1 Score: 421 bits (1083), Expect = 9.690e-148
Identity = 207/252 (82.14%), Postives = 226/252 (89.68%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLP   AP T FVNA+GS+V QEYAIAARA+PDCI  MAET  ELKDLQKEALARQYVIIVDRSGSM A+DGRGT WDSARDAV +MIDT+  YD+DHTVPVY+FDNE VFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEA+ETYAGTKRPNY L+PGTTFIVLLDGGADDE+AVM+++  FADPRNGYVANHTQIA+S  QIGDD  ATRFLKRLDDEIEPDICDT+KDD+L  +GGLD+LLY AIFD
Sbjct:    1 MKLPSAPAPRTQFVNAQGSHVPQEYAIAARADPDCIKDMAETSNELKDLQKEALARQYVIIVDRSGSMAASDGRGTRWDSARDAVAKMIDTIFKYDVDHTVPVYVFDNESVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEAIETYAGTKRPNYSLIPGTTFIVLLDGGADDEEAVMRSLRHFADPRNGYVANHTQIALSFLQIGDDAGATRFLKRLDDEIEPDICDTKKDDVLKTSGGLDQLLYDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A836CG78_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG78_9STRA)

HSP 1 Score: 369 bits (948), Expect = 3.500e-127
Identity = 180/252 (71.43%), Postives = 210/252 (83.33%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLPP + P+  F+NAKGSNV QE+AIAARANPD IP MAETP+EL+ LQKEALARQYVIIVD SGSM A DG+GT WDSAR AV +M+DT+  YD+DHTVP+Y+FD+E  FIGE+TKASQVK +F EF PRGTT L   L EAL TYAGTKRPNY+LVPGTTFIVLLDGGADDE  VM+ +  FADPRNGY+ NHTQIA+S  Q+GDD SA+ FL++LDD I PDICD ++DDIL++ GGLDRLL+ AIFD
Sbjct:    1 MKLPPVAPPAMHFINAKGSNVPQEFAIAARANPDVIPQMAETPKELQALQKEALARQYVIIVDMSGSMAARDGKGTRWDSARSAVEKMVDTIFAYDVDHTVPLYLFDSEVTFIGELTKASQVKAVFKEFGPRGTTGLGAALREALSTYAGTKRPNYQLVPGTTFIVLLDGGADDEADVMRVLQEFADPRNGYIENHTQIALSFVQVGDDASASAFLQKLDDSITPDICDFKRDDILTQLGGLDRLLHDAIFD 252
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A835ZEJ5_9STRA (VWFA domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEJ5_9STRA)

HSP 1 Score: 360 bits (925), Expect = 1.150e-123
Identity = 175/253 (69.17%), Postives = 210/253 (83.00%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRG-THWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLPP + PST FVNA+GS+V +EYA+ AR+NPD I TMAETP+E  DLQKEAL RQYV+IVDRSGSM   DG G T WDSA  A+ +M+DT+  YD+DH VP+Y+FD+E +F+GE+T  +QV+QIF EFKPRG+T L+  L EAL TYAGTKRPNYE+VPGTTFIVLLDGGADDE+AV++T+  FADP N ++ANHTQIAIS  QIGDDP+A RFLKRLDD  +PDICDT+KDDIL + GGLDRLL+ AIFD
Sbjct:    1 MKLPPTAPPSTMFVNAQGSDVPKEYALPARSNPDLIVTMAETPKEKMDLQKEALVRQYVLIVDRSGSMSNPDGSGRTRWDSAGAAIEKMVDTIFQYDVDHQVPLYLFDSEVIFVGELTSPAQVRQIFKEFKPRGSTGLDKALHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDEEAVLRTIKYFADPANRFIANHTQIAISFVQIGDDPNAERFLKRLDDTSDPDICDTKKDDILYQAGGLDRLLFDAIFD 253
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BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A835YYE7_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYE7_9STRA)

HSP 1 Score: 351 bits (901), Expect = 4.980e-120
Identity = 171/252 (67.86%), Postives = 203/252 (80.56%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLPP + P+  F+NAKGS+V +E+AIAAR NPD IP MAET +E KDL +EALARQYV+IVD SGSM   DGRGT WDSAR AV +M+DT+  YD+DHTVP+Y+FD++  F+GE+T  SQVK +F EF PRG+T L   L EAL TYAGTKRPNYELVPGTTFIVLLDGGADDE  V + +  FADP++GYV+NHTQ+A+S  QIGDD  A+ FLKRLDD I PDICD  KDDILS++GGLD LLY+AIFD
Sbjct:    1 MKLPPCAPPAMHFINAKGSSVPKEFAIAARTNPDMIPQMAETSKESKDLHREALARQYVVIVDMSGSMATRDGRGTRWDSARVAVEKMVDTIFEYDVDHTVPLYLFDSQVTFVGELTSPSQVKAVFKEFGPRGSTGLGPALREALGTYAGTKRPNYELVPGTTFIVLLDGGADDEGEVTRVLQEFADPKSGYVSNHTQLAVSFIQIGDDAGASAFLKRLDDGITPDICDFVKDDILSQSGGLDTLLYNAIFD 252
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A835ZDC5_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDC5_9STRA)

HSP 1 Score: 345 bits (884), Expect = 3.130e-117
Identity = 171/252 (67.86%), Postives = 205/252 (81.35%), Query Frame = 1 
Query:    4 KLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRG-THWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            +LPP  AP+T FVNAKGS+V ++YA+AARANPD I TMA+T  EL DL+KEALARQYV+IVD+S SMG  DG G T WDSAR AV  M+ T+  +DIDHTVP+Y FD    F+GE+T ASQV+Q F E+ P G+T+L+  L+EAL TYAGTKRPNYELVPGTTFIVLLDGGADDE AV++T+  FADP NGY+ANHTQIAISL QIGDD  A RFLK LD+ ++PDICDT+KDDIL + GG+D++LY AIFD
Sbjct:   15 QLPPAPAPATEFVNAKGSDVPKQYALAARANPDLIHTMADTSTELSDLKKEALARQYVLIVDKSTSMGWGDGAGKTRWDSARAAVETMVLTIFEHDIDHTVPLYFFDRNVDFVGELTSASQVQQAFREYSPGGSTNLDAALLEALGTYAGTKRPNYELVPGTTFIVLLDGGADDESAVLRTIRHFADPANGYIANHTQIAISLVQIGDDDVAERFLKTLDNTVDPDICDTKKDDILYQAGGIDKMLYDAIFD 266
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BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A835YR58_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR58_9STRA)

HSP 1 Score: 336 bits (861), Expect = 6.280e-114
Identity = 167/253 (66.01%), Postives = 201/253 (79.45%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRG-THWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLPP +A ST FVNA+GS+V +E+A+ AR+NPD I TMAETP+E   LQ+EAL RQYV+IVDRSGSM A D  G T WDSA  AV  M+DT+  YD DH VP+Y+FD+E   +GE+T  SQVKQ+F E++PRG+T L+  L EAL TYAGTKRPNYE+VPGTTFIVLLDG ADDE+ VM+T+  FADP N ++ANHTQIA+S  QIGDDP+A RFL  LD+  EPDICDT+KDDIL + GGLDRLL+ AIFD
Sbjct:    1 MKLPPAAALSTMFVNAQGSDVPKEFALPARSNPDLIATMAETPKEKTTLQREALIRQYVLIVDRSGSMAAPDRNGRTRWDSAGVAVENMVDTIFKYDNDHQVPLYLFDSEVTSVGELTSPSQVKQVFREYRPRGSTGLDKALHEALNTYAGTKRPNYEVVPGTTFIVLLDGSADDEEPVMRTIRYFADPANKFIANHTQIALSFVQIGDDPNAERFLNCLDETAEPDICDTKKDDILYQAGGLDRLLHDAIFD 253
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: A0A835YW67_9STRA (VWFA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW67_9STRA)

HSP 1 Score: 324 bits (831), Expect = 2.000e-109
Identity = 165/245 (67.35%), Postives = 200/245 (81.63%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRG-THWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQI--AISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGL 726
            MKLPP + PST FVNA+GS+V +EYA+ ARANPD I +MAETP+E  DLQ+EAL RQYV+IV+RSGSM   DG G T WDSA  AV +M+DT+ +YD+DHTVP+Y+FD+E +F+GE+T  +QVKQ+F EF PRG+T L+  L EAL TYAGTKRPNYE+VPGTTFIVLLDGGADDE+AV +T+  FADP N ++ANHTQI  AIS  QIGDD +A RFLKRLDD +EPDI DT+KDDIL + GGL
Sbjct:    1 MKLPPTAPPSTLFVNAQGSDVPKEYALPARANPDLIVSMAETPKEKMDLQREALDRQYVLIVERSGSMFNPDGSGKTRWDSAGAAVEKMVDTIFDYDVDHTVPLYVFDSEVIFVGELTSPAQVKQVFREFGPRGSTGLDKGLHEALSTYAGTKRPNYEVVPGTTFIVLLDGGADDEEAV-RTIRYFADPANRFIANHTQIQIAISFVQIGDDTNAERFLKRLDDTVEPDIFDTKKDDILYQAGGL 244
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: Q8QNB1_ESV1K (EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNB1_ESV1K)

HSP 1 Score: 296 bits (758), Expect = 2.950e-98
Identity = 149/254 (58.66%), Postives = 187/254 (73.62%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEI--EPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLP  +  ST F NA+GS+V +E+A+ AR NP+ I  MAETP E   L+KEALARQYV+++DRSGSMG ADG  T W+SAR AV ++++    YD DH VPVY+FD++  F+GE T +SQV  +F  ++PRGTTDL   L  A+E YAG KRPNYE+ PGTTFIV+LDG ADD+DAV + + +F+DP +GYVANHTQ+AIS  QI DDP AT FL  LD      PDI DT+KDDILS  GG+D+L + AIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSSVPKEFALEARKNPEVISQMAETPSEKSALEKEALARQYVLLIDRSGSMGWADGSTTRWESARKAVEKLVEAAFIYDTDHRVPVYLFDDKVEFVGECTSSSQVVDVFKNYQPRGTTDLAQCLEVAMEEYAGRKRPNYEVCPGTTFIVVLDGCADDKDAVKRVLRKFSDPVSGYVANHTQLAISFLQIADDPGATAFLNELDRGFVGSPDIVDTKKDDILSLPGGIDKLFHDAIFD 254
[Close]
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Match: D8LPJ6_ECTSI (EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ6_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 4.960e-92
Identity = 138/254 (54.33%), Postives = 183/254 (72.05%), Query Frame = 1 
Query:    1 MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQKEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHTVPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAGTKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIAISLCQIGDDPSATRFLKRLDDEI--EPDICDTQKDDILSETGGLDRLLYSAIFD 756
            MKLP  +  ST F NA+GS V +E+A+ AR NP+ I  MAE+P E +DL+KEALARQYV+I+DRSGSM   DG+ T W+SAR AV +++++V  YDID ++P+Y+FD++  F+GE T + Q+  +F +++PRG TDL   L  A++TY G  R N+E VPGTTF+V+LDG ADD  AV   + ++ADP +G+V NHT  AIS  QI DDP AT FLK LDD I   PDICD + D+ LSE  G+DRLL+ AIFD
Sbjct:    1 MKLPAAAPASTEFRNAEGSTVPKEFALEARKNPEVISQMAESPSEKRDLEKEALARQYVLIIDRSGSMSWPDGKTTRWESARKAVEKIVESVFKYDIDGSIPLYLFDDQVEFVGECTNSGQIVSVFNDYQPRGRTDLAKCLDVAMKTYLGKNRINFETVPGTTFLVILDGDADDRQAVKDVIRKYADPASGFVENHTNAAISFVQIADDPGATAFLKDLDDGIIGTPDICDFKVDNFLSEKDGVDRLLFDAIFD 254
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156846 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z7E0_9STRA1.410e-181100.00VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CHH8_9STRA9.690e-14882.14VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CG78_9STRA3.500e-12771.43VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835ZEJ5_9STRA1.150e-12369.17VWFA domain-containing protein n=2 Tax=Tribonema m... [more]
A0A835YYE7_9STRA4.980e-12067.86VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZDC5_9STRA3.130e-11767.86VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YR58_9STRA6.280e-11466.01VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835YW67_9STRA2.000e-10967.35VWFA domain-containing protein n=1 Tax=Tribonema m... [more]
Q8QNB1_ESV1K2.950e-9858.66EsV-1-176 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPJ6_ECTSI4.960e-9254.33EsV-1-176 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1062528..1063286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156846|e_gw1.2.229.1
DescriptionPFAM von Willebrand factor type A domain
COG categoryS
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,1G11R@1117|Cyanobacteria,1HJVR@1161|Nostocales
Evalue4.28e-27
Seed ortholog272123.Anacy_3264
Hectar predicted targeting categoryother localisation
TranscriptId157168
TrackFilteredModels1
ProteinId156846
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156846gene_655Tribonema minus UTEX_B_3156 geneContig_2 1062528..1063286 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_655_1exon_655_1Tribonema minus UTEX_B_3156 exonContig_2 1062528..1063286 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_655CDS_655Tribonema minus UTEX_B_3156 CDSContig_2 1062528..1063286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156846Trimin1|156846|e_gw1.2.229.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1062528..1063286 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_655 ID=mRNA_655|Name=jgi.p|Trimin1|156846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_2:1062528..1063286- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGCCCCCGCCTTCCGCACCATCGACCACGTTTGTGAACGCCAA
GGGAAGCAATGTAATACAAGAGTATGCCATCGCAGCACGCGCCAACCCTG
ATTGTATACCCACCATGGCTGAGACTCCGAGGGAGCTCAAAGATTTGCAG
AAGGAAGCACTTGCGCGACAGTATGTCATAATCGTAGACCGAAGCGGATC
AATGGGGGCTGCAGATGGGCGCGGTACGCACTGGGACTCGGCCCGCGATG
CAGTGACAAGGATGATTGACACTGTACTCAATTACGACATCGATCATACT
GTGCCTGTGTACATCTTCGACAACGAATGTGTGTTTATCGGTGAGGTGAC
CAAGGCGTCCCAGGTCAAGCAGATATTCACGGAGTTCAAGCCGAGGGGCA
CTACCGATCTAAACAATGTGCTGGTCGAGGCACTAGAGACTTATGCGGGG
ACGAAACGCCCCAACTACGAGTTGGTTCCAGGGACCACATTCATTGTATT
GCTCGACGGGGGTGCAGATGACGAAGACGCAGTCATGAAGACCGTATGTC
GTTTTGCGGATCCGCGCAATGGATACGTTGCGAATCACACTCAGATTGCC
ATCAGCTTGTGTCAGATTGGTGATGACCCCAGCGCGACCCGTTTTCTGAA
GAGACTGGATGACGAGATCGAGCCTGACATCTGTGATACACAGAAGGATG
ACATTCTCTCCGAGACGGGTGGGCTTGACAGGCTCCTGTACAGCGCTATA
TTTGATTGA
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protein sequence of jgi.p|Trimin1|156846

>Trimin1|156846|e_gw1.2.229.1 ID=Trimin1|156846|e_gw1.2.229.1|Name=jgi.p|Trimin1|156846|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=253bp
MKLPPPSAPSTTFVNAKGSNVIQEYAIAARANPDCIPTMAETPRELKDLQ
KEALARQYVIIVDRSGSMGAADGRGTHWDSARDAVTRMIDTVLNYDIDHT
VPVYIFDNECVFIGEVTKASQVKQIFTEFKPRGTTDLNNVLVEALETYAG
TKRPNYELVPGTTFIVLLDGGADDEDAVMKTVCRFADPRNGYVANHTQIA
ISLCQIGDDPSATRFLKRLDDEIEPDICDTQKDDILSETGGLDRLLYSAI
FD*
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mRNA from alignment at Contig_2:1062528..1063286-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_655 ID=mRNA_655|Name=jgi.p|Trimin1|156846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=759bp|location=Sequence derived from alignment at Contig_2:1062528..1063286- (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCCCCGCCTTCCGCACCATCGACCACGTTTGTGAACGCCAA
GGGAAGCAATGTAATACAAGAGTATGCCATCGCAGCACGCGCCAACCCTG
ATTGTATACCCACCATGGCTGAGACTCCGAGGGAGCTCAAAGATTTGCAG
AAGGAAGCACTTGCGCGACAGTATGTCATAATCGTAGACCGAAGCGGATC
AATGGGGGCTGCAGATGGGCGCGGTACGCACTGGGACTCGGCCCGCGATG
CAGTGACAAGGATGATTGACACTGTACTCAATTACGACATCGATCATACT
GTGCCTGTGTACATCTTCGACAACGAATGTGTGTTTATCGGTGAGGTGAC
CAAGGCGTCCCAGGTCAAGCAGATATTCACGGAGTTCAAGCCGAGGGGCA
CTACCGATCTAAACAATGTGCTGGTCGAGGCACTAGAGACTTATGCGGGG
ACGAAACGCCCCAACTACGAGTTGGTTCCAGGGACCACATTCATTGTATT
GCTCGACGGGGGTGCAGATGACGAAGACGCAGTCATGAAGACCGTATGTC
GTTTTGCGGATCCGCGCAATGGATACGTTGCGAATCACACTCAGATTGCC
ATCAGCTTGTGTCAGATTGGTGATGACCCCAGCGCGACCCGTTTTCTGAA
GAGACTGGATGACGAGATCGAGCCTGACATCTGTGATACACAGAAGGATG
ACATTCTCTCCGAGACGGGTGGGCTTGACAGGCTCCTGTACAGCGCTATA
TTTGATTGA
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Coding sequence (CDS) from alignment at Contig_2:1062528..1063286-

>mRNA_655 ID=mRNA_655|Name=jgi.p|Trimin1|156846|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=759bp|location=Sequence derived from alignment at Contig_2:1062528..1063286- (Tribonema minus UTEX_B_3156 )
ATGAAGCTGCCCCCGCCTTCCGCACCATCGACCACGTTTGTGAACGCCAA
GGGAAGCAATGTAATACAAGAGTATGCCATCGCAGCACGCGCCAACCCTG
ATTGTATACCCACCATGGCTGAGACTCCGAGGGAGCTCAAAGATTTGCAG
AAGGAAGCACTTGCGCGACAGTATGTCATAATCGTAGACCGAAGCGGATC
AATGGGGGCTGCAGATGGGCGCGGTACGCACTGGGACTCGGCCCGCGATG
CAGTGACAAGGATGATTGACACTGTACTCAATTACGACATCGATCATACT
GTGCCTGTGTACATCTTCGACAACGAATGTGTGTTTATCGGTGAGGTGAC
CAAGGCGTCCCAGGTCAAGCAGATATTCACGGAGTTCAAGCCGAGGGGCA
CTACCGATCTAAACAATGTGCTGGTCGAGGCACTAGAGACTTATGCGGGG
ACGAAACGCCCCAACTACGAGTTGGTTCCAGGGACCACATTCATTGTATT
GCTCGACGGGGGTGCAGATGACGAAGACGCAGTCATGAAGACCGTATGTC
GTTTTGCGGATCCGCGCAATGGATACGTTGCGAATCACACTCAGATTGCC
ATCAGCTTGTGTCAGATTGGTGATGACCCCAGCGCGACCCGTTTTCTGAA
GAGACTGGATGACGAGATCGAGCCTGACATCTGTGATACACAGAAGGATG
ACATTCTCTCCGAGACGGGTGGGCTTGACAGGCTCCTGTACAGCGCTATA
TTTGATTGA
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