mRNA_769 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155163
Unique NamemRNA_769
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A835Z2N1_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2N1_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.850e-62
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF
Sbjct:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: V9LJF7_CALMI (Histone H4 n=6 Tax=Bilateria TaxID=33213 RepID=V9LJF7_CALMI)

HSP 1 Score: 180 bits (457), Expect = 3.280e-57
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRDSVTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A835ZF66_9STRA (Histone H4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF66_9STRA)

HSP 1 Score: 180 bits (457), Expect = 3.280e-57
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRDSVTYTEHA+RKTVTSMDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A8C3RS76_CHESE (Histone H4 n=1 Tax=Chelydra serpentina TaxID=8475 RepID=A0A8C3RS76_CHESE)

HSP 1 Score: 179 bits (455), Expect = 6.620e-57
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            M+GRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLED+IRD+VTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: H4_DROME (Histone H4 n=192 Tax=cellular organisms TaxID=131567 RepID=H4_DROME)

HSP 1 Score: 179 bits (454), Expect = 9.410e-57
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRD+VTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 179 bits (454), Expect = 9.410e-57
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRDSVTYTEHA+RKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A1D1W2Z4_RAMVA (Histone H4 n=4 Tax=Panarthropoda TaxID=88770 RepID=A0A1D1W2Z4_RAMVA)

HSP 1 Score: 179 bits (454), Expect = 9.410e-57
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRD+VTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A401RTV2_CHIPU (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=A0A401RTV2_CHIPU)

HSP 1 Score: 179 bits (454), Expect = 9.410e-57
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            M+GRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE+IIRDSVTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENIIRDSVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A182QIK7_9DIPT (Histone H4 n=1 Tax=Anopheles farauti TaxID=69004 RepID=A0A182QIK7_9DIPT)

HSP 1 Score: 179 bits (454), Expect = 9.410e-57
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRD+VTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
[Close]
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Match: A0A5N5T7A5_9CRUS (Histone H4 n=2 Tax=Pancrustacea TaxID=197562 RepID=A0A5N5T7A5_9CRUS)

HSP 1 Score: 179 bits (454), Expect = 1.000e-56
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYGF 303
            MTGRG GG+G+GKGGAKRHRKVLRDNI GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLE++IRD+VTYTEHAKRKTVT+MDVV ALKRQGRTLYGF
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF 101
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155163 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2N1_9STRA2.850e-62100.00Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
V9LJF7_CALMI3.280e-5792.08Histone H4 n=6 Tax=Bilateria TaxID=33213 RepID=V9L... [more]
A0A835ZF66_9STRA3.280e-5792.08Histone H4 n=2 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A8C3RS76_CHESE6.620e-5791.09Histone H4 n=1 Tax=Chelydra serpentina TaxID=8475 ... [more]
H4_DROME9.410e-5791.09Histone H4 n=192 Tax=cellular organisms TaxID=1315... [more]
F0W2L9_9STRA9.410e-5791.09Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
A0A1D1W2Z4_RAMVA9.410e-5791.09Histone H4 n=4 Tax=Panarthropoda TaxID=88770 RepID... [more]
A0A401RTV2_CHIPU9.410e-5792.08Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A182QIK7_9DIPT9.410e-5791.09Histone H4 n=1 Tax=Anopheles farauti TaxID=69004 R... [more]
A0A5N5T7A5_9CRUS1.000e-5691.09Histone H4 n=2 Tax=Pancrustacea TaxID=197562 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1387887..1388189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155163|gw1.2.345.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11254
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007276,GO:0007292,GO:0008150,GO:0009987,GO:0016043,GO:0016321,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0035059,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0048285,GO:0048609,GO:0051276,GO:0051321,GO:0051704,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:0098813,GO:0140013,GO:1901363,GO:1903046
Preferred nameHis4r
DescriptionHistone H4
COG categoryB
Max annot lvl33208|Metazoa
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota,3A4QH@33154|Opisthokonta,3CPD5@33208|Metazoa,3DKYN@33213|Bilateria,41ZB4@6656|Arthropoda,3SMKP@50557|Insecta,46IBM@7399|Hymenoptera
Evalue1.54e-57
Seed ortholog103372.F4W7W7
Hectar predicted targeting categoryother localisation
TranscriptId155485
TrackFilteredModels1
ProteinId155163
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155163gene_769Tribonema minus UTEX_B_3156 geneContig_2 1387887..1388189 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_769_1exon_769_1Tribonema minus UTEX_B_3156 exonContig_2 1387887..1388189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_769CDS_769Tribonema minus UTEX_B_3156 CDSContig_2 1387887..1388189 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155163Trimin1|155163|gw1.2.345.1Tribonema minus UTEX_B_3156 polypeptideContig_2 1387887..1388189 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_769 ID=mRNA_769|Name=jgi.p|Trimin1|155163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_2:1387887..1388189- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGGCGTGGTGGTGGAGGTCGAGGAATTGGCAAGGGCGGTGCGAA
ACGCCACCGAAAAGTGCTTAGAGACAACATAAACGGCATCACGAAACCAG
CCATTCGGCGCCTCGCGAGGCGCGGCGGTGTCAAGCGCATCTCTGGATTA
ATTTATGAGGAGACTCGCGGTGTGCTAAAGGTCTTTCTTGAGGACATCAT
CAGAGACTCGGTTACCTACACAGAGCATGCAAAGCGCAAGACTGTCACAT
CCATGGATGTTGTGCTGGCGCTCAAGCGGCAGGGGCGGACCCTTTACGGA
TTT
back to top

protein sequence of jgi.p|Trimin1|155163

>Trimin1|155163|gw1.2.345.1 ID=Trimin1|155163|gw1.2.345.1|Name=jgi.p|Trimin1|155163|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
MTGRGGGGRGIGKGGAKRHRKVLRDNINGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLEDIIRDSVTYTEHAKRKTVTSMDVVLALKRQGRTLYG
F
back to top

mRNA from alignment at Contig_2:1387887..1388189-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_769 ID=mRNA_769|Name=jgi.p|Trimin1|155163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_2:1387887..1388189- (Tribonema minus UTEX_B_3156 )
ATGACAGGGCGTGGTGGTGGAGGTCGAGGAATTGGCAAGGGCGGTGCGAA
ACGCCACCGAAAAGTGCTTAGAGACAACATAAACGGCATCACGAAACCAG
CCATTCGGCGCCTCGCGAGGCGCGGCGGTGTCAAGCGCATCTCTGGATTA
ATTTATGAGGAGACTCGCGGTGTGCTAAAGGTCTTTCTTGAGGACATCAT
CAGAGACTCGGTTACCTACACAGAGCATGCAAAGCGCAAGACTGTCACAT
CCATGGATGTTGTGCTGGCGCTCAAGCGGCAGGGGCGGACCCTTTACGGA
TTT
back to top

Coding sequence (CDS) from alignment at Contig_2:1387887..1388189-

>mRNA_769 ID=mRNA_769|Name=jgi.p|Trimin1|155163|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_2:1387887..1388189- (Tribonema minus UTEX_B_3156 )
ATGACAGGGCGTGGTGGTGGAGGTCGAGGAATTGGCAAGGGCGGTGCGAA
ACGCCACCGAAAAGTGCTTAGAGACAACATAAACGGCATCACGAAACCAG
CCATTCGGCGCCTCGCGAGGCGCGGCGGTGTCAAGCGCATCTCTGGATTA
ATTTATGAGGAGACTCGCGGTGTGCTAAAGGTCTTTCTTGAGGACATCAT
CAGAGACTCGGTTACCTACACAGAGCATGCAAAGCGCAAGACTGTCACAT
CCATGGATGTTGTGCTGGCGCTCAAGCGGCAGGGGCGGACCCTTTACGGA
TTT
back to top