mRNA_833 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A835ZCJ5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCJ5_9STRA) HSP 1 Score: 286 bits (731), Expect = 8.830e-98 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 Query: 1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN Sbjct: 1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 140
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A835Z862_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z862_9STRA) HSP 1 Score: 225 bits (574), Expect = 7.960e-74 Identity = 101/140 (72.14%), Postives = 125/140 (89.29%), Query Frame = 1 Query: 1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420 PV+QGG+G +PWGGA++FI+P+A WLWTQ NARFSAP T+DFSTLITNSSQ D+QA+IH+LVDNDA ++LND KVGS SMGFS ++Y K+P+++PWGTSTLR R +N+G GPAGL+VAVVDAASG T+VK+DPSSWVFN Sbjct: 1 PVSQGGFGVVPWGGASQFIDPTATWLWTQTNARFSAPAGTVDFSTLITNSSQQDKQALIHMLVDNDADVFLNDAKVGSGSMGFSVREYAKIPIALPWGTSTLRFRCVNSGTGPAGLLVAVVDAASGVTIVKSDPSSWVFN 140
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A836CLV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLV6_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.100e-43 Identity = 68/139 (48.92%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 4 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420 V+QGG+G +PWG A++F + +A W+WT NARFSAP + +F+ + S A++HILVDNDA IYLN KVGSAS+GFS +DY+++P+++ WG + + +R NTG GPAG+ +++D S T L+KT+ S WV+N Sbjct: 47 VDQGGFGTVPWGSASQFEDKTAKWIWTSPNARFSAPVGSYNFAAQLKIMSVTPVTAMLHILVDNDADIYLNGEKVGSASLGFSARDYSRIPLTLVWGVNDIVLRCTNTGVGPAGVCASLIDDVSKTPLLKTEGSRWVYN 185
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A836CJ77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ77_9STRA) HSP 1 Score: 145 bits (366), Expect = 5.740e-42 Identity = 67/139 (48.20%), Postives = 94/139 (67.63%), Query Frame = 1 Query: 4 VNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420 V+QGG+G +PWG A+ F + +A W+WT NARFSA T DF+ S A +HILVDNDA ++LN KVGSAS+GFS QDY ++P+++ WG + + + NTG GPAG+ +++D AS T L+ T+ S WV+N Sbjct: 15 VDQGGFGIVPWGAASNFEDKTAKWIWTSPNARFSAAVGTYDFAAQYKIMSTTPVTATLHILVDNDADVFLNGSKVGSASLGFSAQDYARIPMTLVWGVNDIVLHCTNTGVGPAGVCASLIDDASKTPLLHTEGSRWVYN 153
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A4V1IRM8_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4V1IRM8_9FUNG) HSP 1 Score: 107 bits (266), Expect = 1.790e-24 Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 7 NQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417 N G +G PWG A++F +P+A W+W+ A +AP T+ F+ NSS AV+HIL DN+AV+ LN + VG+A+ G++ Y +LP+S+ G +++ I A N G GPAGL A++ + + L+ TD ++W Sbjct: 46 NLGIFGVSPWGSASQFYDPTAYWIWSVPTAATAAPAGTVTFANQYYNSSNFTIPAVLHILADNNAVVVLNGVIVGTAAGGWTTPSYTQLPLSLTPGNNSISIVATNAG-GPAGLCAALISGVNKSVLLHTD-NTWTL 180
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A4P9WNY3_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WNY3_9FUNG) HSP 1 Score: 97.4 bits (241), Expect = 1.200e-21 Identity = 47/136 (34.56%), Postives = 80/136 (58.82%), Query Frame = 1 Query: 7 NQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWV 414 N G +G PWG A++F +P+A W+W + A +AP ++ F NSS + A++HIL D+ A +++N VG A G+S Y K+PV++ G + + I N GPAGL +++ + + + L+ TD ++W+ Sbjct: 178 NLGLFGISPWGSASQFADPTASWIWYTSTAAATAPSGSVTFVNQYYNSSYNTMPAILHILADDSATVFVNGANVGVAVAGWSTTSYTKIPVNLTPGANLISIVDTNAS-GPAGLCASLISSVTNSVLLHTD-TTWL 311
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: D8TKU9_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TKU9_VOLCA) HSP 1 Score: 75.1 bits (183), Expect = 4.000e-14 Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 1 Query: 1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATID-------FSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSIPW--GTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVFN 420 P Q YG G A F + SA W+W N S T F IT S+ QA++HI+ D+DA IY+N + S + G+++ Y P++I GT+ L I N+G GPA L+ ++ T L +TD SW N Sbjct: 33 PAAQSIYGTDNIGVAKPFFDLSAKWIWYHTNGAGSGSNRTSSGQSIAPLFIKTITVSTAGGTQALLHIIPDDDANIYVNGFFIQSVNAGWTSGTYTNRPITINLVQGTNVLAISIRNSGGGPAALLASLTSMDGRTVLARTD-KSWEVN 180
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A8J4B5N1_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4B5N1_9CHLO) HSP 1 Score: 70.1 bits (170), Expect = 2.670e-11 Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 52 FIEPSAMWLWTQNNARFSAPP-ATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSI--PWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417 F +P AM +W N SA F+T +T + Q QA++H++VD+ A I++N + + G+ + Y+ P+ I P GTS L +R NTG GPA + ++ + GT L +T+ S+W + Sbjct: 388 FSDPQAMAIWVHENFHSSASTLVAATFTTTVTIAGQA-TQALLHVIVDDIADIFVNGAFITTVKWGWVSGQYSDRPIKITLPVGTSALSLRVKNTG-GPASIAAYLISSNGGTVLTRTN-SAWTY 509
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A8J4EZI9_9CHLO (Uncharacterized protein (Fragment) n=10 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EZI9_9CHLO) HSP 1 Score: 70.1 bits (170), Expect = 2.740e-11 Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 52 FIEPSAMWLWTQNNARFSAPP-ATIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSNQDYNKLPVSI--PWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417 F +P AM +W N SA F+T +T + Q QA++H++VD+ A I++N + + G+ + Y+ P+ I P GTS L +R NTG GPA + ++ + GT L +T+ S+W + Sbjct: 561 FSDPQAMAIWVHENFHSSASTLVAATFTTTVTIAGQA-TQALLHVIVDDIADIFVNGAFITTVKWGWVSGQYSDRPIKITLPVGTSALSLRVKNTG-GPASIAAYLISSNGGTVLTRTN-SAWTY 682
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Match: A0A8J4FMS7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FMS7_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 2.510e-10 Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 1 Query: 1 PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPA-TIDFSTLITNSSQDDQQAVIHILVDNDAVIYLNDIKVGSASMGFSN-QDYNKLPV--SIPWGTSTLRIRAMNTGQGPAGLIVAVVDAASGTTLVKTDPSSWVF 417 P YG G F + A W+W + SA A F+T N+ +A+++I+VD+ A IYLN + + G++N +DY PV ++ GT+TL IR NT A L+ ++V + T L +T ++W + Sbjct: 32 PAGSSPYGTSNIGPGKLFTDTQAKWIWCNSAGGVSASIAIAATFTTTFLNTVAG-AEALLNIIVDDIAEIYLNGVYITKVQWGWNNAEDYTNRPVHLTLATGTNTLSIRVQNTWVTAAALLASLVGSNGSTVLARTS-NAWTY 172 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138091 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_833 ID=mRNA_833|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_2:1548698..1549117+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGGTGAACCAAGGTGGCTATGGGGCCATTCCTTGGGGGGGCGCGGCAAAback to top protein sequence of jgi.p|Trimin1|138091 >Trimin1|138091|gw1.2.139.1 ID=Trimin1|138091|gw1.2.139.1|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp PVNQGGYGAIPWGGAAKFIEPSAMWLWTQNNARFSAPPATIDFSTLITNSback to top mRNA from alignment at Contig_2:1548698..1549117+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_833 ID=mRNA_833|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=420bp|location=Sequence derived from alignment at Contig_2:1548698..1549117+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_2:1548698..1549117+ >mRNA_833 ID=mRNA_833|Name=jgi.p|Trimin1|138091|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_2:1548698..1549117+ (Tribonema minus UTEX_B_3156 )back to top |