mRNA_864 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|38219
Unique NamemRNA_864
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: A0A835ZAD7_9STRA (Spinocerebellar ataxia type 10 protein domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD7_9STRA)

HSP 1 Score: 251 bits (640), Expect = 8.180e-84
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 
Query:    1 AEPRPXXXXXXXXXXXXXXDGGVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQGEAAATGSAQQHAAASDATRVNRYTGRLEAVGEDEAALNPK 420
            AEPRPXXXXXXXXXXXXXXDGGVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQGEAAATGSAQQHAAASDATRVNRYTGRLEAVGEDEAALNPK
Sbjct:    1 AEPRPXXXXXXXXXXXXXXDGGVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQGEAAATGSAQQHAAASDATRVNRYTGRLEAVGEDEAALNPK 140
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: D8LJX9_ECTSI (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.060e-25
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 1 
Query:   58 DGGVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            DG VP GRK +L+KVI NAC  CR +QD VR  GG+PLVL+HC +D A+P LRE+ ++A+RNLCEGNA NQA ++ L+ QG
Sbjct:  511 DGAVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCKVDEANPLLREYALLALRNLCEGNAANQASISSLQPQG 591
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: A0A6H5L010_9PHAE (Atx10homo_assoc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L010_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.370e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:   61 GGVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            G VP GRK +L+KVI NAC  CR +QD VR  GG+PLVL+HC +D  +P LRE+ ++AVRNLCEGN  NQA +A L+ QG
Sbjct:  732 GAVPAGRKVELLKVIGNACFRCRRSQDLVREEGGLPLVLNHCAVDETNPLLREYALLAVRNLCEGNPANQASIASLQPQG 811
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: C3YS27_BRAFL (Ataxin-10 (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YS27_BRAFL)

HSP 1 Score: 88.6 bits (218), Expect = 4.600e-20
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:   73 HGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            HG K DL++++ N C    + QD+VR   G+PL+L HCNID  +P++ +W I  +RNLCEGN +NQA +A LE +G
Sbjct:    7 HGLKRDLIRLLGNMCFQNTSNQDKVRELEGIPLILDHCNIDDHNPYISQWAIFTIRNLCEGNHDNQAVIAGLEDKG 82
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: A0A7S2RDR4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RDR4_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-19
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   64 GVPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            G+P GRK +LV+++AN C   + +Q+ +R  GG+P +LSHCNID  +  LREWG+ AVRN+  GN ENQ  +  LE QG
Sbjct:   20 GLPVGRKVELVRLVANMCFHGQRSQNEIRDLGGLPSLLSHCNIDGENMLLREWGVFAVRNITSGNVENQQFIRDLELQG 98
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: UPI0018D7FF51 (ataxin-10-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7FF51)

HSP 1 Score: 90.9 bits (224), Expect = 1.520e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:   76 GRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            G K DLV++I N CH   A QD+VR   G+P++L  CNID ++PF+ +W I A+RNLC+GN +NQA +A++  QG
Sbjct:  406 GFKRDLVRLIGNMCHSHTANQDKVRELHGIPVILEQCNIDDSNPFISQWAIFAIRNLCDGNLQNQAVIAEMSNQG 480
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: F0W2U1_9STRA (Uncharacterized protein AlNc14C11G1321 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2U1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.540e-18
Identity = 39/77 (50.65%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   67 VPHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQ 297
            VP G ++ ++ VI N C+  R  QD +R  GG+PLVL+HC ID  +P +REW +VA+RN+CE NAENQ  +A L++Q
Sbjct:  423 VPPGYRSHMIAVIGNLCYRARVHQDLLRRLGGIPLVLNHCIIDERNPLIREWSLVAIRNICEDNAENQQFIASLKQQ 499
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: A0A8B7ZSI3_ACAPL (Ataxin-10 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZSI3_ACAPL)

HSP 1 Score: 89.0 bits (219), Expect = 4.680e-18
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   76 GRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            G K DLV++I N CH   A Q+++R   G+P++L HC+ID ++PF+ +W I A+RNLC+GN ENQA +A++  QG
Sbjct:  292 GFKRDLVRLIGNMCHNYTANQNKIRELHGIPVLLEHCSIDDSNPFISQWAIFALRNLCDGNLENQAVIAEMSNQG 366
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BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: A0A024GS17_9STRA (Atx10homo_assoc domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GS17_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.190e-18
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:   70 PHGRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQ 297
            P G ++ ++ VI N C+  R  QD +R  GG+PLVL+HC ID  +P +REW +VAVRN+CE NAENQ  +A L++Q
Sbjct:  424 PSGYRSHIIAVIGNICYRSRNHQDLLRQLGGIPLVLNHCIIDERNPLIREWSLVAVRNICEDNAENQKFIASLKQQ 499
[Close]
BLAST of jgi.p|Trimin1|38219 vs. uniprot
Match: A0A8B7ZWA4_ACAPL (Ataxin-10 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZWA4_ACAPL)

HSP 1 Score: 89.0 bits (219), Expect = 7.260e-18
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:   76 GRKADLVKVIANACHCCRAAQDRVRGAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG 300
            G K DLV++I N CH   A Q+++R   G+P++L HC+ID ++PF+ +W I A+RNLC+GN ENQA +A++  QG
Sbjct:  404 GFKRDLVRLIGNMCHNYTANQNKIRELHGIPVLLEHCSIDDSNPFISQWAIFALRNLCDGNLENQAVIAEMSNQG 478
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|38219 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAD7_9STRA8.180e-84100.00Spinocerebellar ataxia type 10 protein domain-cont... [more]
D8LJX9_ECTSI4.060e-2560.49Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
A0A6H5L010_9PHAE1.370e-2360.00Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
C3YS27_BRAFL4.600e-2048.68Ataxin-10 (Fragment) n=1 Tax=Branchiostoma florida... [more]
A0A7S2RDR4_9STRA1.060e-1950.63Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI0018D7FF511.520e-1850.67ataxin-10-like n=1 Tax=Patiria miniata TaxID=46514... [more]
F0W2U1_9STRA1.540e-1850.65Uncharacterized protein AlNc14C11G1321 n=1 Tax=Alb... [more]
A0A8B7ZSI3_ACAPL4.680e-1849.33Ataxin-10 n=1 Tax=Acanthaster planci TaxID=133434 ... [more]
A0A024GS17_9STRA7.190e-1851.32Atx10homo_assoc domain-containing protein n=1 Tax=... [more]
A0A8B7ZWA4_ACAPL7.260e-1849.33Ataxin-10 n=2 Tax=Acanthaster planci TaxID=133434 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:1843807..1845578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|38219|CE38218_85
BRITEko00000,ko00001,ko00002,ko01000,ko04131
KEGG rclassRC00004,RC00503
KEGG ReactionR01978
KEGG ModuleM00088,M00095
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG koko:K01641,ko:K18932,ko:K19323,ko:K20003
EC2.3.1.225,2.3.3.10
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0016020,GO:0016043,GO:0019899,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030425,GO:0031175,GO:0032501,GO:0032502,GO:0036477,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044297,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048471,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051259,GO:0051260,GO:0060271,GO:0065003,GO:0070206,GO:0070207,GO:0070925,GO:0071840,GO:0071944,GO:0097447,GO:0097458,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Preferred nameATXN10
Descriptionthreonine biosynthetic process
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2676@1|root,KOG2676@2759|Eukaryota
Evalue5.77e-26
Seed ortholog2880.D8LJX9
Hectar predicted targeting categoryother localisation
TranscriptId38541
TrackFilteredModels1
ProteinId38219
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|38219gene_864Tribonema minus UTEX_B_3156 geneContig_2 1843807..1845578 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_864_3exon_864_3Tribonema minus UTEX_B_3156 exonContig_2 1843807..1843973 -
exon_864_2exon_864_2Tribonema minus UTEX_B_3156 exonContig_2 1844754..1844939 -
exon_864_1exon_864_1Tribonema minus UTEX_B_3156 exonContig_2 1845495..1845578 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_864UTR3_864Tribonema minus UTEX_B_3156 three_prime_UTRContig_2 1843807..1843820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_864CDS_864Tribonema minus UTEX_B_3156 CDSContig_2 1845495..1845578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|38219Trimin1|38219|CE38218_85Tribonema minus UTEX_B_3156 polypeptideContig_2 1843821..1845578 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_864 ID=mRNA_864|Name=jgi.p|Trimin1|38219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=437bp|location=Sequence derived from alignment at Contig_2:1843807..1845578- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCGAGCCGAGGCCGCCGCCGCCGCCGCCGCGCAGCGCCGCGGACGGCGG
CGGCGGCGACGGAGGCGTGCCGCACGGAAGAAAGGCGGATCTGGTGAAGG
TCATCGCGAACGCGTGCCATTGCTGCCGCGCGGCGCAGGACCGCGTGCGC
GGCGCCGGCGGCGTGCCGCTGGTGCTGTCGCACTGCAACATCGACCACGC
GAGCCCGTTCCTGCGCGAGTGGGGCATCGTGGCGGTGCGCAACCTGTGCG
AGGGGAACGCCGAGAACCAGGCGTGCGTTGCGAAGCTCGAGAAGCAGGGC
GAGGCTGCGGCGACGGGCAGCGCGCAGCAGCACGCTGCCGCGTCTGACGC
CACGCGCGTCAACCGTTACACGGGGCGCCTGGAGGCCGTGGGCGAAGATG
AAGCAGCGCTCAACCCTAAATGAACGACGTGAAATTA
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protein sequence of jgi.p|Trimin1|38219

>Trimin1|38219|CE38218_85 ID=Trimin1|38219|CE38218_85|Name=jgi.p|Trimin1|38219|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
AEPRPPPPPPRSAADGGGGDGGVPHGRKADLVKVIANACHCCRAAQDRVR
GAGGVPLVLSHCNIDHASPFLREWGIVAVRNLCEGNAENQACVAKLEKQG
EAAATGSAQQHAAASDATRVNRYTGRLEAVGEDEAALNPK*
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mRNA from alignment at Contig_2:1843807..1845578-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_864 ID=mRNA_864|Name=jgi.p|Trimin1|38219|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1772bp|location=Sequence derived from alignment at Contig_2:1843807..1845578- (Tribonema minus UTEX_B_3156 )
GCCGAGCCGAGGCCGCCGCCGCCGCCGCCGCGCAGCGCCGCGGACGGCGG
CGGCGGCGACGGAGGCGTGCCGCACGGAAGAAAGGTCAGCGCTCTTCAAC
AGGCTGCCCCTTGCGCCATGGCTTGCCTGCCTGCGTTGACATTAATATGT
ACCCAGCACAGGTCATATGGCGGCTGCATCCAAGCAATGTATCCCCAATC
AAATGTGCGTCAATGCTGGCGGCCGGGCGGTGCGGATTGGCGACGCCCCA
AGCGCCTGCTGCGCCGCGACAGAGGCAGGCTCATCAGCGGTCAGCTAGCT
CGACGGCGCACGCGCGCAGCTCGCCGCCCCGGCCGCTACGCGCGCCTGAC
GCGCTGCGCCGGCGTGCGCTGCAGCTGACGCAGGCGCTAGGAACCGTTGC
TCTACATGGCGGCGCCTTACTCACATGCCCTGGCCTCAGATCGGCGCGCT
GCCGGTACCTTTCTGGCCATTCTCCATTTCTGGTGGTTCTCCGTGGGCGC
TCGCCACTGATGCGCCGTCCGCGATCAGGTCTGCAGGCTCTTCCCGAGTT
GCAGATGTGCTGGTTCTCCTTGTAGAGCGACGCCCCTCCCCCCCTCTCAA
GCTGCTTCGCCCCCTTGCTCTCCCCCCCTGCCCCTTCAGGCGGATCTGGT
GAAGGTCATCGCGAACGCGTGCCATTGCTGCCGCGCGGCGCAGGACCGCG
TGCGCGGCGCCGGCGGCGTGCCGCTGGTGCTGTCGCACTGCAACATCGAC
CACGCGAGCCCGTTCCTGCGCGAGTGGGGCATCGTGGCGGTGCGCAACCT
GTGCGAGGGGAACGCCGAGAACCAGGTGCGCGTGCGCGCGCGCTTGCGCT
CTCTCTGCTCGCTGCTGATCGAGGGCCTGGTTTGTTTCTGAAATACCTGT
TGTGGCGCGCTTACGGCTGTGCCTGGACGGAGCGGTGGCTGTCGTCACGA
CAGTGCGCTACACTGGCTGTTGTCACGGTAGCATCGTGGCGGTGCGCAGC
CTGTGCGAGGGGAACGCCGAGAACCGGGTGCGGGCGCGCGCGCGCTAGCG
CTCTCTCGCTGCTGAACGATGACCTGGGTGATAATTGAGCAATCTGTTGT
TGTGTCCTGATCTTGTTTTCCTCACATAAATGCTACCTTACCACGACGGA
AATGATGCGTTTCGACACAACAGTGCGCTACCCATTTTGAATTGAAAATT
AAGAAGATCGATGCGGCACTGTGAAGAGGGTGCGTCCATTGTTGATATTT
CTGCACCATTTTGCGCCATTGATCAATCGGCGACGCAGCCCCGCCTGCGA
TCAGAAAGCGCCTGCGAGGCACGCTCCTGTGGGGGATCGCGCAGAGGCTC
ACAGGTGTCATTATGCCTAATATATCGACGTCATCAAGATCACCGGGAAT
TGATTTGTTCCCCTTGCATCCCCGCGTGAGTCGCGCGCTGTGCCACGCCT
GACGCTGCAGCACCTGCTCTTCGTGCCGCGAGCTGTCGCACGAGCACGTC
TGTACCCCGCTCATTGCAAACCGGTCTCGTGGAATAATCCGCACAGGGTG
ACCACCTTTTTCACTGAGTCGATCTGTGCGTGCCGTCTGCTGTCGCTACC
GCCAGGCGTGCGTTGCGAAGCTCGAGAAGCAGGGCGAGGCTGCGGCGACG
GGCAGCGCGCAGCAGCACGCTGCCGCGTCTGACGCCACGCGCGTCAACCG
TTACACGGGGCGCCTGGAGGCCGTGGGCGAAGATGAAGCAGCGCTCAACC
CTAAATGAACGACGTGAAATTA
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Coding sequence (CDS) from alignment at Contig_2:1843807..1845578-

>mRNA_864 ID=mRNA_864|Name=jgi.p|Trimin1|38219|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_2:1843807..1845578- (Tribonema minus UTEX_B_3156 )
GCCGAGCCGAGGCCGCCGCCGCCGCCGCCGCGCAGCGCCGCGGACGGCGG
CGGCGGCGACGGAGGCGTGCCGCACGGAAGAAAGGCGGATCTGGTGAAGG
TCATCGCGAACGCGTGCCATTGCTGCCGCGCGGCGCAGGACCGCGTGCGC
GGCGCCGGCGGCGTGCCGCTGGTGCTGTCGCACTGCAACATCGACCACGC
GAGCCCGTTCCTGCGCGAGTGGGGCATCGTGGCGGTGCGCAACCTGTGCG
AGGGGAACGCCGAGAACCAGGCGTGCGTTGCGAAGCTCGAGAAGCAGGGC
GAGGCTGCGGCGACGGGCAGCGCGCAGCAGCACGCTGCCGCGTCTGACGC
CACGCGCGTCAACCGTTACACGGGGCGCCTGGAGGCCGTGGGCGAAGATG
AAGCAGCGCTCAACCCTAAATGA
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