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Homology
BLAST of jgi.p|Trimin1|37682 vs. uniprot
Match: A0A836CH22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH22_9STRA) HSP 1 Score: 434 bits (1115), Expect = 9.930e-149 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1
Query: 58 MMAVRASALACLLLCLPSIIDGRPQPSGWRRSNRRPGGRVVAMFGLGDNTFVKWAREAQEQERAAQXXXXXXXXXXXXXEGSQPSMSEREAQYRAFLEATGERLPDYEHDEEAAPSEAVTEGSSSSSAQGPMTVLLSVAKTTLVAGLGYVVALKGAALVKAELAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDEAASEAAEVADLADXXXXXXXXXXXXXXXXXXXXXXXXSAAAVEAEQLVEDNGDIQAQLEQIEAERDAERAFAAEQEALQYLEQEEADEEAAAAPFEGDNEDDXXXXXXGDVRAGGVGVRRKEPVDLSMV 1059
MMAVRASALACLLLCLPSIIDGRPQPSGWRRSNRRPGGRVVAMFGLGDNTFVKWAREAQEQERAAQXXXXXXXXXXXXXEGSQPSMSEREAQYRAFLEATGERLPDYEHDEEAAPSEAVTEGSSSSSAQGPMTVLLSVAKTTLVAGLGYVVALKGAALVKAELAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDEAASEAAEVADLADXXXXXXXXXXXXXXXXXXXXXXXXSAAAVEAEQLVEDNGDIQAQLEQIEAERDAERAFAAEQEALQYLEQEEADEEAAAAPFEGDNEDDXXXXXXGDVRAGGVGVRRKEPVDLSMV
Sbjct: 1 MMAVRASALACLLLCLPSIIDGRPQPSGWRRSNRRPGGRVVAMFGLGDNTFVKWAREAQEQERAAQXXXXXXXXXXXXXEGSQPSMSEREAQYRAFLEATGERLPDYEHDEEAAPSEAVTEGSSSSSAQGPMTVLLSVAKTTLVAGLGYVVALKGAALVKAELAKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDEAASEAAEVADLADXXXXXXXXXXXXXXXXXXXXXXXXSAAAVEAEQLVEDNGDIQAQLEQIEAERDAERAFAAEQEALQYLEQEEADEEAAAAPFEGDNEDDXXXXXXGDVRAGGVGVRRKEPVDLSMV 334
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|37682|CE37681_556 |
| Hectar predicted targeting category | signal peptide |
| TranscriptId | 38004 |
| Track | FilteredModels1 |
| ProteinId | 37682 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_595 ID=mRNA_595|Name=jgi.p|Trimin1|37682|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1232bp|location=Sequence derived from alignment at Contig_2:629401..635300- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
CAGAGTTGAGGCCAAGACCGCCACTGCACCCGATCTGGACGGAAAGGGAG CTTCAGGATGATGGCTGTGCGGGCCAGCGCCTTGGCGTGCCTGCTTCTGT GTTTGCCTTCAATCATCGATGGTCGTCCGCAGCCTTCAGGATGGCGAAGG TCGAACCGCAGACCTGGCGGGAGAGTGGTTGCCATGTTTGGGCTCGGGGA CAACACATTCGTCAAATGGGCTAGAGAAGCACAAGAGCAGGAGAGAGCAG CACAGCAAGGCAGCAGCGGCGGCAGCAGCAGCGCCAGCAGCAGCGAGGGC TCACAACCATCGATGAGCGAGCGGGAGGCTCAGTACCGCGCGTTTCTCGA GGCGACTGGCGAGCGGCTGCCCGACTACGAACATGATGAGGAGGCCGCGC CGTCCGAGGCGGTGACGGAGGGGAGCAGCAGCAGCAGCGCTCAGGGGCCT ATGACCGTCCTGCTGTCCGTGGCAAAGACGACGCTGGTGGCGGGCCTGGG CTACGTGGTGGCGCTCAAGGGCGCGGCGCTGGTCAAGGCGGAGCTCGCAA AGCGCCGCGCCGCCGCTGCCGGAGATGGCGGCGCCGCCGACGGCGGCAGC AGCAGCAGCAGCGACAGCGCGGCGAGGGTGAGGGCTGCGGCTCAAGCAGT CATGCAACATCATCCTGACGAAGCAGCGAGTGAGGCGGCAGAGGTGGCAG ATCTGGCAGATGACGCGGCAGAGGAGGAAGCGGAGGCATTCACGGATGCT CAGGAGGCGGAGGGGGACGAGCTTGAGGACCTGAGCGCTGCTGCCGTGGA GGCGGAGCAGCTGGTGGAGGACAACGGCGACATACAGGCGCAGCTCGAGC AGATTGAGGCGGAACGGGACGCCGAGCGCGCGTTTGCGGCCGAGCAGGAG GCGCTGCAGTACCTGGAGCAGGAGGAGGCCGACGAGGAGGCCGCAGCAGC GCCATTTGAAGGCGACAATGAGGATGATGACAATGATGACGAGGACGGCG ACGTCCGGGCAGGTGGTGTGGGCGTGCGGAGGAAGGAGCCTGTTGACCTC AGCATGGTCTGAAGGGAAAATGGAGCGGCAGATGCTGACTGTACCTTACT GTTAACCCCTACCCTCTCGGCAGCGGTCACTTGTGGTGGCGACAAATAGT AGCATAATATCCACCACCGGGCACATTTGGTGTCGGCCTCTGTGATGTAC CTTTACATGAAAAAGCGCTTGGCGGTCTCAAG back to topprotein sequence of jgi.p|Trimin1|37682 >Trimin1|37682|CE37681_556 ID=Trimin1|37682|CE37681_556|Name=jgi.p|Trimin1|37682|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp
MMAVRASALACLLLCLPSIIDGRPQPSGWRRSNRRPGGRVVAMFGLGDNT FVKWAREAQEQERAAQQGSSGGSSSASSSEGSQPSMSEREAQYRAFLEAT GERLPDYEHDEEAAPSEAVTEGSSSSSAQGPMTVLLSVAKTTLVAGLGYV VALKGAALVKAELAKRRAAAAGDGGAADGGSSSSSDSAARVRAAAQAVMQ HHPDEAASEAAEVADLADDAAEEEAEAFTDAQEAEGDELEDLSAAAVEAE QLVEDNGDIQAQLEQIEAERDAERAFAAEQEALQYLEQEEADEEAAAAPF EGDNEDDDNDDEDGDVRAGGVGVRRKEPVDLSMV* back to topmRNA from alignment at Contig_2:629401..635300- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_595 ID=mRNA_595|Name=jgi.p|Trimin1|37682|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5900bp|location=Sequence derived from alignment at Contig_2:629401..635300- (Tribonema minus UTEX_B_3156 ) CAGAGTTGAGGCCAAGACCGCCACTGCACCCGATCTGGACGGAAAGGGAG
CTTCAGGATGATGGCTGTGCGGGCCAGCGCCTTGGCGTGCCTGCTTCTGT
GTTTGCCTTCAATCATCGATGGTCGTCCGCAGCCTTCAGGATGGCGAAGG
TCGAACCGCAGACCTGTAAGTATCGGCGTCACCCTGAGTCCTCTTGTGGT
TTTGTTTCGGAGCGTTATTGGGGTTACGAGAGCGCCAGCTGTCGCGTGAT
GGTACGTCCAGTGTGGTGTCGCAGTTCTTACATGCACATGCTGTGTCGTT
TGCATGCAGGGCGGGAGAGTGGTTGCCATGTTTGGGCTCGGGGACAACAC
ATTCGTCAAATGGGCTAGAGAAGCGTAAGTGTGGCCGCCCTGGCGAAGCA
TTTTTGTGTGCACCGCATGCGTGGAGCCCATGCTCAACTTCAACTTAGTA
CACAAAAAGTTGTATGAGGCAAAGGGATGCGAAGGTGTGACATGAAACTC
CTTGCTGTAGATTTTTGATGTTTTGTATTTTACCTCACCTCGTAAGTTGT
AATGTCACGGCGGTGGTCCAGGCATGATTGCTGGATGTATGCCGCCACAA
CCACCATCATGACAAGTGCAGCTGTACTACGTGAGACCTGATTCAGTCTG
CCACATGCCTACAGCGCCATCAACTTCCCATTTCGTGCAGCATTTTTCAT
TTTGCCCCATCAGACAAGAGCAGGAGAGAGCAGCACAGCAAGGCAGCAGC
GGCGGCAGCAGCAGCGCCAGCAGCAGCGAGGGCTCACAACCATCGATGAG
CGAGCGGGAGGCTCAGTACCGCGCGTTTCTCGAGGCGACTGGCGAGCGGC
TGCCCGACTACGAACATGATGAGGAGGCCGCGCCGTCCGAGGCGGTGACG
GAGGGGAGCAGCAGCAGCAGCGCTCAGGGGCCTATGGTGAGGCGTGCCTG
CTTGCCAGTGCGCGCGCGCATGCCAGTGTGTGCGTGCATGCGGTTTCAGT
TTCAGGTGGGCCAGCAGCGAGGTACTGTGAGCGCTCAGCGCCGCATACCA
GCGATCTGTCTGCTGCCGCAGGGCCTGCACCCTGCCCCCTTGGAGAGGCC
GTTTCCCTGGCGTGCGGAGTCCGTTTTGCAGGCGCATGGCGCCGCCTGCG
CCGTTCTGTGCTTGCGATGTACGTCACGACGGCACTCAACTGACTGGCTC
GTTGTAGCGGCTGCATCAACACATGACCTCCCATGACCGATTGCGCCCCC
CCGCGCGCTGCAGACCGTCCTGCTGTCCGTGGCAAAGACGACGCTGGTGG
CGGGCCTGGGCTACGTGGTGGCGCTCAAGGGCGCGGCGCTGGTCAAGGCG
GAGCTCGCAAAGCGCCGCGCCGCCGCTGCCGGAGATGGCGGCGCCGCCGA
CGGCGGCAGCAGCAGCAGCAGCGACAGCGCGGCGAGGGTGAGGGCTGCGG
CTCAAGCAGGTACGGACGTGCCAGCGCTCAACACACGTTTTTAAGTGAAA
GGGGTTTCACTGCGAGTAATACAGGAGTTGGCTTCATGGAGGATCACAGC
AGGCATGCTGGAATTTGCCAGATGACTTGGAGGTGCGCGCTGGTAGGCGT
GCTGAAGACGTGTGTGCGCACTTTCTGGCCGATGATGTGTTGTGGACCCC
TTTGACACTGATGCTGACATCACTGATGCCCGAGTGTGAGTACCCCCCCC
CTCCCCCCTACCACCCCCAACCCCCCCCGCGCGCGGCTGTGTGCCAGTTG
CATGATCTCACATTTCAAGATTCCAGATTCCTCCAGCGTGGCGTGATGTA
CCCCAGCATTGCAAAGCGCATCTTGTTTCACTGGTGTGATGTGGCAGTAC
ATGATAAGTTGTGTGATGCCCAGAGACGGCGACTTGAACAATGCTGGTAT
GCGTACTGGACGCAATCAGCAGCGCCCAGTGCGAGGCAGCGATGCCTGCG
GGCAGTGCAAATACAATGGCAGTTGTTGTCAGCAGCGTCAAAGCACTTCA
ACACACGCGAGGCCAGCAACACGAGCCTGATTGCAAGCGCTTCTTGTGTC
GCTGCCGAGCAGTCATGCAACATCATCCTGACGAAGCAGCGAGTGAGGCG
GCAGAGGTGGCAGATCTGGCAGATGACGCGGCAGAGGAGGAAGCGGAGGC
ATTCACGGATGCTCAGGAGGTACGTGTGACGCACCATGTACTTGAAGTGT
TTGTGGTACTTGAAGTTTGCGGTGCACCTTGTGTGTTTGGTCACACTATG
TCATTGCAGATAGCCAACATGACTGCCTGCTTACACCGCTCACTGCATCC
CCAAACGTGCTACATTATGTGTGCGTCACAGCGCGTTGCTCAGTCTTCGC
TTGAAGTGTCGCCATGCGCATGTGACGCTCCGCATGCTTGAAGTGCGTTG
AGCTGGAAACCTCCACCACGGTGTTGCAATCAGCCAGTTATGTACAGACG
GCACTGGTCGAAGCACACACCAACTAAACAAACAAACTTGTGTGTAGGGT
ACACGCCACTCGGTGTGTGCGTTGCAGCACCTTGACTTGAAGGTGGCTGT
CGTTGCCATGACAACTCTGGTGCTCTGTTGTATAGATACAGCAATGTTAC
ACCAATCAAAACAATGACACACCTTACAAGAAATAAGAAGAGTGTATGCC
AGTTCTTGCCGACCTCAGTCGTTTGTGTAGTTTGACGCATTCTACGATGC
GTGCAAGCCTTTATTTTACACCTGCACAGTAATGTTTTGATGTGCAGCGA
CATGGTTGAATGTTAGCGGCATGGACCGTGTGCGCCTACGTGGGCACAGC
GCACTTGACACCACGCGGTTCATATCGTTCAGCACAGCCACGGAGAGAGC
GAATGTCATGGCATCAGGCACTGCCACCAGACTCTTGATTTCACGCCGCT
TCGCTGGCATAATTATTATTTACAGCAAGAGTAGGTAGGCATGTTATGCA
TGCCATGCCATCGCCTCATCCCCCTTGCGACTCTGCGACTGTTGGCAGGC
GGAGGGGGACGAGCTTGAGGACCTGAGCGCTGCTGCCGTGGAGGCGGAGC
AGCTGGTGGAGGACAACGGCGACATACAGGCGCAGCTCGAGCAGATTGAG
GTCAGTGCTGAGCGTCGGTACAGGGAGCACCGAACCATAACCCTAATGCT
AACAACGGCGACATACAAGCGCAGGACGAGCAGATTGAGGTCAGCGTGCT
GAGTGTGTTGCTGTGCGTTGGAAGTCAACAGTGCTGAGTGTCGCTGAGCG
TTGGTGGGGAGAGCACTGAACCCCGACTTCAAAACCCGACCGCGCTTTCA
AGCATGCAAATGTCTGCATTGAGGTTTTGGGATCCAAAGGTGCTTTTGGG
GCTACATGGGGTCAGACGTTACCCGAACGCGAAACAGTCTCGGTTGCTGT
GTCAGTTCACAAGCTGTGGGTGGGTTGCTCTTGTTCTGCGCGTGAAGAAC
AGAGCGACTGCTGCAGCACACAAGCGCAGCTGTGGACATTGATATCAGCG
CTGGGTGGTGATGTTGTGATTGATGTTGACGTGGTGGATGTACGCTCAGG
CTCAGTTGGGGCCCTAGCAATGGCACTTGGCAGGCGAAATTAACCGACGC
GGCAGGAGAGGTGTGCAGGCGCAGGCTGCGCATGTTGTCAGGTCTGCTAT
GGTTTGCCGAATCTTGAGTGCAGTCTGCGGACAGCTTCTCAGTGCATGCT
CAAAAGTGCTTCAACCTGGTCCTTCAGGTCACATGATGGCGGTGATCGCC
GTGTGCCCATGACCATCGCTGCATGACGATAACCATTAGCCATCGCCGTC
AACGCAAGATGACCGCTGAATGTGGTGGCAGGTCATTTCTCTCACGATAT
CTTTCTCACAGGGTTTCATCTCGTGGGTACCTACTTTTGGCCACCTGACC
GTGTCGATCGCTGCTCTGGAGGCCCTCTCACGGTGCGGAATGGACAATCC
TCTGTTGGCTGCGCAGAAGCGTCAACAGCCCCTTGCACTCAAGTGCACAA
AGTTATGCCTAGTCCGAGCCCCACATCCGCTCGCAGCACGTCAATGCTGC
GTGAATTGCGTCAATGCTTTGTGGGTAACTACTGTGGCACGTCCACCTGG
AGGTACCTCAGTCGCGTCGGATACACAGCGTGCAGTGCAGACGAGGCTGC
TGCACAGGAGTACACCTAGGAACGCATAGTACACTCGGCCTTCCCTGGGC
CTCTACAAAGGCAAGTCCATGGGATACACGAGTGCACGCGCACGAGCGTC
ATCATCATCGCCTGCACGCGGAAGACTGCCTCATGTCGGCGTCACTTGCA
GTCCCGCCGCCCTGCAAGAGCTGCCATGCTGCCACGCCCGCCGATCGCCG
CAGCGCCTGACGCTGCCGCCGTACCACATGCTTTCACCTCTGCGCAGGCG
GAACGGGACGCCGAGCGCGCGTTTGCGGCCGAGCAGGAGGCGCTGCAGTA
CCTGGAGCAGGTGAGTTGGGGTCATCATGGCTGCGGTGCTTTGGTGCGAT
GATGGTTTCGCTGCTCTGTCGCTGGTGAATGTCGGGCGTGCCAATAGGGG
GGTCCGCTCGGGCCGCTTCGTTGGCGCGTGGCTCGGGGCGTAGCGGGGGC
GGTCGGTCCGCGCTTTGCACAGCAAGCTCAAGGGCGAGGCATCGGCTTTG
TACTCATGACCTTGTATCCGTGAAGCCCCCAGGCAATTCGAGAAGGCCCC
CAGGGAGGCAGGTGTTTCATGGTGTACTCCTATGCAGTGTCCTAGTCTGC
ACCACAGCACCTAGCGGCGCCTTTGCAGGACGGCACCCAGTTTGCGCCGC
CCGCTCTCTTGCCTTAAAGCACAGGCGCCCATGCGCCGTGCGGCTGTCGG
CGCAACTCATTCGGACGCAACTGAAGCGCACGTAACGGGGGTCGTTTGCG
CACTGCGGCTGGCGTCTTGCGCACGTGGACTACAAGATTGAAGTTCTACA
GGCTAGGGGGTTCGTGTGTTCCTGAATCAATCGCGCCTGTTTGAATGCGT
GCAGGAGGAGGCCGACGAGGAGGCCGCAGCAGCGCCATTTGAAGGCGACA
ATGAGGATGATGACAATGATGACGAGGACGGCGACGTCCGGGCAGGTATG
TATCAAACACGCGGTTGGTACACGAGAGACTCTGTCACATTGAGTCGTGA
GTTGTGACACAATGCAGGCATGTACCCTAACACGCGGTCACTACTAGAGC
GACTTCTGTCACGTCGATTCGTGACACAATGCATTGGTGTCTGGTGACAA
GATGAGCGTGAACGCGGCAGAAACGGTGAATCACCATCAAAGGCTGGGCA
CTTTGAAGTGTATACATGGTGATTATGTGCGCCTATGCCCACTGCAAGCC
TCCTGGATCCCCTTGGTGATATACCTCTGTTTGGCATTTGTGTGCAGCAT
GTACAAGCAGAGAAGTAGACATAAAGCAACCATCGCGCACAAATAAGCGC
ATTTGTATCCGTCCAGTGCCTCCGCATGTCTGACATGATTTCGGCGCCCA
TAAAATATACACACTCCCACAGGAAGACAAACATGCACATACCATTGACA
TTCTTGTCACAAACTGCAAAAAAGAGGACCGTGTGACCGCATGTGACCAT
TTCATTGTACGATGCCTTTCCATCAGTAGACTTGGCAGCCTCGTCTCAAA
GACTGTTGTGTACATTTCCATTCCCGGCAGGTGGTGTGGGCGTGCGGAGG
AAGGAGCCTGTTGACCTCAGCATGGTCTGAAGGGAAAATGGAGCGGCAGA
TGCTGACTGTACCTTACTGTTAACCCCTACCCTCTCGGCAGCGGTCACTT
GTGGTGGCGACAAATAGTAGCATAATATCCACCACCGGGCACATTTGGTG
TCGGCCTCTGTGATGTACCTTTACATGAAAAAGCGCTTGGCGGTCTCAAG
back to topCoding sequence (CDS) from alignment at Contig_2:629401..635300- >mRNA_595 ID=mRNA_595|Name=jgi.p|Trimin1|37682|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_2:629401..635300- (Tribonema minus UTEX_B_3156 ) ATGATGGCTGTGCGGGCCAGCGCCTTGGCGTGCCTGCTTCTGTGTTTGCC TTCAATCATCGATGGTCGTCCGCAGCCTTCAGGATGGCGAAGGTCGAACC GCAGACCTGGCGGGAGAGTGGTTGCCATGTTTGGGCTCGGGGACAACACA TTCGTCAAATGGGCTAGAGAAGCACAAGAGCAGGAGAGAGCAGCACAGCA AGGCAGCAGCGGCGGCAGCAGCAGCGCCAGCAGCAGCGAGGGCTCACAAC CATCGATGAGCGAGCGGGAGGCTCAGTACCGCGCGTTTCTCGAGGCGACT GGCGAGCGGCTGCCCGACTACGAACATGATGAGGAGGCCGCGCCGTCCGA GGCGGTGACGGAGGGGAGCAGCAGCAGCAGCGCTCAGGGGCCTATGACCG TCCTGCTGTCCGTGGCAAAGACGACGCTGGTGGCGGGCCTGGGCTACGTG GTGGCGCTCAAGGGCGCGGCGCTGGTCAAGGCGGAGCTCGCAAAGCGCCG CGCCGCCGCTGCCGGAGATGGCGGCGCCGCCGACGGCGGCAGCAGCAGCA GCAGCGACAGCGCGGCGAGGGTGAGGGCTGCGGCTCAAGCAGTCATGCAA CATCATCCTGACGAAGCAGCGAGTGAGGCGGCAGAGGTGGCAGATCTGGC AGATGACGCGGCAGAGGAGGAAGCGGAGGCATTCACGGATGCTCAGGAGG CGGAGGGGGACGAGCTTGAGGACCTGAGCGCTGCTGCCGTGGAGGCGGAG CAGCTGGTGGAGGACAACGGCGACATACAGGCGCAGCTCGAGCAGATTGA GGCGGAACGGGACGCCGAGCGCGCGTTTGCGGCCGAGCAGGAGGCGCTGC AGTACCTGGAGCAGGAGGAGGCCGACGAGGAGGCCGCAGCAGCGCCATTT GAAGGCGACAATGAGGATGATGACAATGATGACGAGGACGGCGACGTCCG GGCAGGTGGTGTGGGCGTGCGGAGGAAGGAGCCTGTTGACCTCAGCATGG TCTGA back to top
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