mRNA_569 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|37468
Unique NamemRNA_569
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A835Z502_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z502_9STRA)

HSP 1 Score: 290 bits (741), Expect = 4.480e-98
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 2 
Query:   80 MASTLSTDFDTNLASLKGLPLAASVPGLPLSQVGGTTFGVPNNGTVATSPEQDADGQENPADPGSAGGGPPMLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID 508
            MASTLSTDFDTNLASLKGLPLAASVPGLPLSQVGGTTFGVPNNGTVATSPEQDADGQENPADPGSAGGGPPMLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID
Sbjct:    1 MASTLSTDFDTNLASLKGLPLAASVPGLPLSQVGGTTFGVPNNGTVATSPEQDADGQENPADPGSAGGGPPMLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID 143
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A836CJ66_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ66_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.180e-25
Identity = 47/63 (74.60%), Postives = 56/63 (88.89%), Query Frame = 2 
Query:  320 LPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID 508
            L PG++RVRAL+DFEAA+ GDLNFKA DII+T++++W  DGWV G CNGQTGQFPSNYTERID
Sbjct:  709 LGPGYMRVRALYDFEAAEEGDLNFKANDIIVTDASRWSADGWVTGTCNGQTGQFPSNYTERID 771
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: D8LEH1_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH1_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.070e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:  320 LPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTE 499
            L PG +RVRAL+D+EA Q GDL+F  GD+IIT+   +  DGWV+G C+G TG FP+NYTE
Sbjct:  459 LEPGKVRVRALYDYEATQEGDLSFGVGDMIITDGGAFSGDGWVSGTCHGNTGIFPANYTE 518
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A8J2WE11_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE11_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.390e-12
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  305 SDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGM----DGWVNGICNGQTGQFPSNY 493
            ++ + LPPG + V   FDF A QPGDL FKAGD+I+T++A +       GWV+G  NG+ G FPSNY
Sbjct:  639 TEEKVLPPGMMEVVGTFDFAADQPGDLGFKAGDVILTDAAAFAAAGDSGGWVSGELNGKQGSFPSNY 705
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A7S3XPH4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPH4_HETAK)

HSP 1 Score: 64.7 bits (156), Expect = 1.000e-9
Identity = 29/67 (43.28%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:  302 QSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGIC-NGQTGQFPSNYTE 499
            Q D   +PPG IR++A+F++ A Q GDL+F  GD I  E   +  + W+ G   +G +G FP+NYTE
Sbjct:   80 QEDGPVIPPGKIRLKAVFEYVAQQDGDLSFDVGDAIFVEDQVYEENAWIEGSKPDGSSGVFPTNYTE 146
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A0G2GVE6_9EURO (Class E vacuolar protein-sorting machinery protein HSE1 n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2GVE6_9EURO)

HSP 1 Score: 67.0 bits (162), Expect = 1.910e-9
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 2 
Query:  266 PGSAGGGPPMLAQSDSEELPPGFI-----RVRALFDFEAAQPGDLNFKAGDII-ITESAQWGMDGWVNGICNGQTGQFPSNYTERID*P 514
            P    GG P   QS  + +P G       RVRALFDF+ ++PG+L F+ GD+I + ES       W  G   GQTG FP NY E++  P
Sbjct:  132 PSDLSGGAPHAQQSQPQAVPSGTTAATVSRVRALFDFQPSEPGELQFRKGDVIAVLESV---YKDWWKGSLRGQTGIFPLNYVEKLSDP 217
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A4Q4YVW3_9PEZI (Uncharacterized protein n=1 Tax=Monosporascus sp. 5C6A TaxID=2211642 RepID=A0A4Q4YVW3_9PEZI)

HSP 1 Score: 66.6 bits (161), Expect = 2.600e-9
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 2 
Query:  293 MLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID*PQCASPT 532
            +   ++S  +P G I VRAL+D++A  P +L+F+AGDII   S Q    GW +GI NG  G FPSNY   +  P+  + T
Sbjct:  458 LSTAAESSIIPSGNICVRALYDYDADDPTNLSFRAGDIIQVLSQQ--ESGWWHGITNGVPGWFPSNYCHIVSCPEQTTET 535
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: UPI001E8EEEC5 (uncharacterized protein n=1 Tax=Talaromyces proteolyticus TaxID=1131652 RepID=UPI001E8EEEC5)

HSP 1 Score: 66.6 bits (161), Expect = 2.640e-9
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 2 
Query:  299 AQSDSEELPPGFI-----RVRALFDFEAAQPGDLNFKAGDII-ITESAQWGMDGWVNGICNGQTGQFPSNYTERID*P 514
            AQS S+ +PPG       RVRALFDF+ ++PG+L F+ GD+I + ES       W  G   GQTG FP NY E++  P
Sbjct:  208 AQSVSQGIPPGTTAATVSRVRALFDFQPSEPGELQFRKGDVIAVLESV---YKDWWKGSLRGQTGIFPLNYVEKLPDP 282
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A182VSJ4_9DIPT (Uncharacterized protein n=1 Tax=Anopheles minimus TaxID=112268 RepID=A0A182VSJ4_9DIPT)

HSP 1 Score: 65.9 bits (159), Expect = 5.410e-9
Identity = 25/74 (33.78%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  287 PPMLAQSDSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID 508
            P      D  + PPG+++ RA+++F A    +++F+ GDI++    Q    GW+ G  NG TG FP ++ E++D
Sbjct:  711 PAAARAGDDVQTPPGYMKYRAIYEFNARNSDEISFQPGDIVMVPLEQNAEPGWLAGEINGHTGWFPESFVEKVD 784
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BLAST of jgi.p|Trimin1|37468 vs. uniprot
Match: A0A182RWF0_ANOFN (Uncharacterized protein n=1 Tax=Anopheles funestus TaxID=62324 RepID=A0A182RWF0_ANOFN)

HSP 1 Score: 65.9 bits (159), Expect = 5.430e-9
Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  290 PMLAQS-DSEELPPGFIRVRALFDFEAAQPGDLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID 508
            P  A+S D  + PPG+++ RA+++F A    +++F+ GDI++    Q    GW+ G  NG TG FP ++ E++D
Sbjct:  747 PAAARSGDDVQTPPGYMKYRAIYEFNARNNDEISFQPGDIVMVPLEQNAEPGWLAGEINGHTGWFPESFVEKVD 820
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|37468 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z502_9STRA4.480e-98100.00SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJ66_9STRA4.180e-2574.60SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
D8LEH1_ECTSI1.070e-1560.00SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A8J2WE11_9STRA3.390e-1250.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3XPH4_HETAK1.000e-943.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G2GVE6_9EURO1.910e-941.57Class E vacuolar protein-sorting machinery protein... [more]
A0A4Q4YVW3_9PEZI2.600e-942.50Uncharacterized protein n=1 Tax=Monosporascus sp. ... [more]
UPI001E8EEEC52.640e-946.15uncharacterized protein n=1 Tax=Talaromyces proteo... [more]
A0A182VSJ4_9DIPT5.410e-933.78Uncharacterized protein n=1 Tax=Anopheles minimus ... [more]
A0A182RWF0_ANOFN5.430e-936.49Uncharacterized protein n=1 Tax=Anopheles funestus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_2contigContig_2:382288..384877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|37468|CE37467_39
BRITEko00000,ko00001,ko03021,ko03036,ko04131
KEGG Pathwayko04144,ko04714,ko05225,map04144,map04714,map05225
KEGG koko:K11247,ko:K11650,ko:K20047
Descriptionintracellular protein transport
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG2199@1|root,KOG2199@2759|Eukaryota
Evalue2.66e-17
Seed ortholog2880.D8LEH1
Hectar predicted targeting categoryother localisation
TranscriptId37790
TrackFilteredModels1
ProteinId37468
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|37468gene_569Tribonema minus UTEX_B_3156 geneContig_2 382288..384877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|37468Trimin1|37468|CE37467_39Tribonema minus UTEX_B_3156 polypeptideContig_2 382403..384798 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_569_4exon_569_4Tribonema minus UTEX_B_3156 exonContig_2 382288..382583 -
exon_569_3exon_569_3Tribonema minus UTEX_B_3156 exonContig_2 383392..383525 -
exon_569_2exon_569_2Tribonema minus UTEX_B_3156 exonContig_2 384223..384295 -
exon_569_1exon_569_1Tribonema minus UTEX_B_3156 exonContig_2 384755..384877 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_569UTR3_569Tribonema minus UTEX_B_3156 three_prime_UTRContig_2 382288..382402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_569CDS_569Tribonema minus UTEX_B_3156 CDSContig_2 384755..384798 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_569UTR5_569Tribonema minus UTEX_B_3156 five_prime_UTRContig_2 384799..384877 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_569 ID=mRNA_569|Name=jgi.p|Trimin1|37468|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=626bp|location=Sequence derived from alignment at Contig_2:382288..384877- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGAATGCATCTCTGCCAGCACCTGCATCTGCAGGACTGCAAGGCGCGG
GGGGTGCCCTAGGTGCATCCGCACACAGCATGGCCAGCACGCTGTCAACA
GACTTTGACACCAATTTAGCATCGCTCAAGGGGCTACCACTTGCAGCCAG
CGTGCCCGGGCTACCGCTTAGCCAAGTGGGTGGCACAACATTTGGGGTAC
CCAACAATGGAACTGTGGCAACATCGCCTGAGCAAGATGCAGATGGACAA
GAAAACCCAGCAGACCCTGGCAGTGCAGGCGGTGGGCCACCAATGCTTGC
ACAGTCAGACAGCGAGGAGCTTCCACCAGGGTTCATTCGGGTGCGGGCGT
TGTTTGACTTTGAAGCCGCCCAGCCAGGCGACCTCAACTTTAAAGCCGGA
GACATCATCATCACCGAAAGTGCGCAGTGGGGCATGGATGGATGGGTCAA
TGGCATCTGCAATGGACAAACCGGCCAATTTCCATCAAACTACACGGAGC
GCATTGACTAGCCACAATGTGCTAGCCCTACTCATATGTTGTGTGACGTG
CCTAGGTTGTGCCAGGGGAAGTAGCGTGCATGCAGTGCGGTTCTGACAGC
TGCCAGTCACGAATACCACATGGCAG
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protein sequence of jgi.p|Trimin1|37468

>Trimin1|37468|CE37467_39 ID=Trimin1|37468|CE37467_39|Name=jgi.p|Trimin1|37468|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MASTLSTDFDTNLASLKGLPLAASVPGLPLSQVGGTTFGVPNNGTVATSP
EQDADGQENPADPGSAGGGPPMLAQSDSEELPPGFIRVRALFDFEAAQPG
DLNFKAGDIIITESAQWGMDGWVNGICNGQTGQFPSNYTERID*
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mRNA from alignment at Contig_2:382288..384877-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_569 ID=mRNA_569|Name=jgi.p|Trimin1|37468|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2590bp|location=Sequence derived from alignment at Contig_2:382288..384877- (Tribonema minus UTEX_B_3156 )
CAGGAATGCATCTCTGCCAGCACCTGCATCTGCAGGACTGCAAGGCGCGG
GGGGTGCCCTAGGTGCATCCGCACACAGCATGGCCAGCACGCTGTCAACA
GACTTTGACACCAATTTAGCATCGTGAGTGCCGCAAACATTTTTTGATGC
CCGGTGCATGACAATGAACAAAGCAAAACAATATGCGGACCTGTAATACC
GTCGTTCACGGCTGGGTCAAACGGTGATATACCTTGCCCGCCAGTGGACA
CAGAGGTTGGCATTGGATTGTTGTGCACTTCAGCATCGCAATTTATGTGC
GACTTACAGGTCTACAGGTCTGTGCTGCTTATTGATTGCTGCGCACAAGC
CTTTCCTCGTATGCTGCTCAAAGAACTTGTGCCATGCAATCAGATGTTTG
CTGTGATTCATGGCCCTATGGTGTGACAGTGCTTCGACATTTAGAAGGAA
CACAACAGCATCATTTTCAAAATAGCTGGGAATCTCTGCCTGTTCTGCCT
GCCCCTGATGGTCTGATACAAATGAGCGGTTTCTGATACCAGCGCTGCTG
TTTCCCGCTGCCACATCTGTGTGCTAAACCAGGCTCAAGGGGCTACCACT
TGCAGCCAGCGTGCCCGGGCTACCGCTTAGCCAAGTGGGTGGCACAACAT
TTGGGGTAGGTGTCAGCACCGTGGGCAAACAACAACGCTCAAAGTGTCCA
ACTGCAAAGGTCATCAATTGAGCTGACTGACTGAAATATTGCCAGCGCAG
ATGTTGGTAGCGCAAGTGTTGCCAGTGCATCAGATTGGACACATTTGCTT
CGTGGGCATGTGAGGCAGATGATTGTCTCGCCTTCAAGTAGAATGCGCTA
CGACTTTCTTTTTAAAAGTACCCAATTTATCAAGATCAGAAGAACCGCGG
TGGTCAAGCCATCAGTTTGTGAGCAACCCAGTAATGGCTAGTCTGGAGCT
TTTGACTCAATTTCTGCACACATTACGTACGTGTACGCACTATGTACACC
CATTGTGACTTGCAGCTTTGGCAACAGAGCTATTGTGTGTTGACAATGTG
CAAGCGCCTCACCAGCACTGTCTTGAATGTGTGCTGCGGCAAATGTCGCG
ATGTAGTGAAGCCTATGTGCTCACTTTGGTCAGGAAAGCCATTGTGTTTG
CCGCACAAACTTGGCTCAATTAGGTTGAGAACAGGCCGCAGTTGCTGGCA
TTAGTGTCAGCGCAGGCATGGAAAGTGTGGCATTGTTGATATCAAATGAA
CTCGTCAGATAGCACACCGGGATGCCAGCATCTACAGACAATGAGGTCTG
CACTCAACGCTCATGGTGACAACTGCGCCTTGATGGCATTTTTTGCGTGT
AGGTACCCAACAATGGAACTGTGGCAACATCGCCTGAGCAAGATGCAGAT
GGACAAGAAAACCCAGCAGACCCTGGCAGTGCAGGCGGTGGGCCACCAAT
GCTTGCACAGTCAGACAGCGAGGAGCTTCCACCAGGGTAAGTCAGCTGCT
TGTTGTCTTTGAAGTGCTCCTTATTCCTCGCAGTTCAAGGCCTCGTCGGC
AAGACGGGGTTGTTCTTACACTACACTAGACTACCCTTGTCACAGTTGAG
GCAGTTCCCCGCTGTCTTGGTGATCTGGCAAGGCCTCGACAGGCAGACAT
CTTCTTGACCTCCAGCAATTGCGCCATTCACTATATTCAATACTGCAAGT
TGCAATCAACCTCATGTGCTGGTAAACTTTGTGGGAGTCGGGATGTTCGC
GTCAGGCTGCCGCTACCCAAGCATTTCAGCGCCGTGTGCAAGCTGCTTTA
GCTTTCAACAGATGGTGCTCATACACCTTGCTAGCCCAGCAGCTTGTGTG
CATAGCAATGTGTGCACTCCACAAGGCAAGTGCACCACCCGCTCCTGTGG
AAGCGCATACAAATACGACCCCCTGATAACTGGCATCTTTGCTTGACACG
TTTCTTTAGAGGGTCCGAACTTCAGGGACACAACGGGCACCTGGGCCCGA
AGGGTGCATAAAAACCGTAATCAAATAGCTGCCAAGAACATGCATGTCAT
TAGCATGAGCCTGCGGGGGGGGTGGGGGGTGGAACGGTGGGGAGGGGGGA
CAAGGCGTCCGCGTTGAAATAAGTCTGCCAAAGGCAACAAGTGATTGCCA
CAGTTGGCCTCTGTCAACTCTTGCCTGTGCTTCACATGGCTGTCAGCTAG
AAGGTGTACAACTGAAGTTTTGATGTGAGTATGTTGTCGGCAGCATCGGA
TCGGCTTGCTGCCCTGATCAACGTTGCCCCTGACCGTGTCTCAGGTTCAT
TCGGGTGCGGGCGTTGTTTGACTTTGAAGCCGCCCAGCCAGGCGACCTCA
ACTTTAAAGCCGGAGACATCATCATCACCGAAAGTGCGCAGTGGGGCATG
GATGGATGGGTCAATGGCATCTGCAATGGACAAACCGGCCAATTTCCATC
AAACTACACGGAGCGCATTGACTAGCCACAATGTGCTAGCCCTACTCATA
TGTTGTGTGACGTGCCTAGGTTGTGCCAGGGGAAGTAGCGTGCATGCAGT
GCGGTTCTGACAGCTGCCAGTCACGAATACCACATGGCAG
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Coding sequence (CDS) from alignment at Contig_2:382288..384877-

>mRNA_569 ID=mRNA_569|Name=jgi.p|Trimin1|37468|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_2:382288..384877- (Tribonema minus UTEX_B_3156 )
ATGGCCAGCACGCTGTCAACAGACTTTGACACCAATTTAGCATCGCTCAA
GGGGCTACCACTTGCAGCCAGCGTGCCCGGGCTACCGCTTAGCCAAGTGG
GTGGCACAACATTTGGGGTACCCAACAATGGAACTGTGGCAACATCGCCT
GAGCAAGATGCAGATGGACAAGAAAACCCAGCAGACCCTGGCAGTGCAGG
CGGTGGGCCACCAATGCTTGCACAGTCAGACAGCGAGGAGCTTCCACCAG
GGTTCATTCGGGTGCGGGCGTTGTTTGACTTTGAAGCCGCCCAGCCAGGC
GACCTCAACTTTAAAGCCGGAGACATCATCATCACCGAAAGTGCGCAGTG
GGGCATGGATGGATGGGTCAATGGCATCTGCAATGGACAAACCGGCCAAT
TTCCATCAAACTACACGGAGCGCATTGACTAG
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