Trimin1|353939|estExt_Genemark1.C_Ctg_1980006 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353939
Unique Name	Trimin1\|353939\|estExt_Genemark1.C_Ctg_1980006
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	577

Homology

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BLAST of jgi.p|Trimin1|353939 vs. uniprot
Match: A0A835Z4B4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B4_9STRA)

HSP 1 Score: 825 bits (2132), Expect = 9.520e-297
Identity = 576/576 (100.00%), Postives = 576/576 (100.00%), Query Frame = 0

Query:    1 MAEEPEAVWKLQMGSKTGGHNIGIFEPGYVTRAGGQKEAPAAMTPLFHDTDYCEKPVYMWKEREPETWSDDXXXXXXXXXKLGAFDRPKPKGARSKTRQDDAGYHAKSCSTAEVMMPLFPSLEDQWRRVQWHMEDARPPPHNMHFVGDRKEQASKYVLFEVQDNEEEAVIKVIPVDEWWRFTKAAREVKMTVKEAMEKMKKQQRGYISGNRALEAVLTATEDARTGEGDDSALTLDSDAKASRKKAAAPKVAARAYAPKDEASDXXXXXXXXXXSGPEGGEPNEAEPGGDAARKPAKKRGEEGGIDFDQPNAGAXXXXXXXXXXXXXXXXXXXXXQVFSDDDAELQDXXXXXXXXXXXXXNADVGLDSSEDETEEVKEGEAAGQKLLDKALEGGGEEXXXXXXXXXXELAGQGAGXXXXXXXXXXXXXXXEDDYTVSGTYKARMAARASPVPSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGALALTQENMILVLRRAGGKMTSKKLLSAFRHELQRDKANRALFKQLLQALVTGVDDALEGKVYKLKDIWMT 576
            MAEEPEAVWKLQMGSKTGGHNIGIFEPGYVTRAGGQKEAPAAMTPLFHDTDYCEKPVYMWKEREPETWSDDXXXXXXXXXKLGAFDRPKPKGARSKTRQDDAGYHAKSCSTAEVMMPLFPSLEDQWRRVQWHMEDARPPPHNMHFVGDRKEQASKYVLFEVQDNEEEAVIKVIPVDEWWRFTKAAREVKMTVKEAMEKMKKQQRGYISGNRALEAVLTATEDARTGEGDDSALTLDSDAKASRKKAAAPKVAARAYAPKDEASDXXXXXXXXXXSGPEGGEPNEAEPGGDAARKPAKKRGEEGGIDFDQPNAGAXXXXXXXXXXXXXXXXXXXXXQVFSDDDAELQDXXXXXXXXXXXXXNADVGLDSSEDETEEVKEGEAAGQKLLDKALEGGGEEXXXXXXXXXXELAGQGAGXXXXXXXXXXXXXXXEDDYTVSGTYKARMAARASPVPSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGALALTQENMILVLRRAGGKMTSKKLLSAFRHELQRDKANRALFKQLLQALVTGVDDALEGKVYKLKDIWMT
Sbjct:    1 MAEEPEAVWKLQMGSKTGGHNIGIFEPGYVTRAGGQKEAPAAMTPLFHDTDYCEKPVYMWKEREPETWSDDXXXXXXXXXKLGAFDRPKPKGARSKTRQDDAGYHAKSCSTAEVMMPLFPSLEDQWRRVQWHMEDARPPPHNMHFVGDRKEQASKYVLFEVQDNEEEAVIKVIPVDEWWRFTKAAREVKMTVKEAMEKMKKQQRGYISGNRALEAVLTATEDARTGEGDDSALTLDSDAKASRKKAAAPKVAARAYAPKDEASDXXXXXXXXXXSGPEGGEPNEAEPGGDAARKPAKKRGEEGGIDFDQPNAGAXXXXXXXXXXXXXXXXXXXXXQVFSDDDAELQDXXXXXXXXXXXXXNADVGLDSSEDETEEVKEGEAAGQKLLDKALEGGGEEXXXXXXXXXXELAGQGAGXXXXXXXXXXXXXXXEDDYTVSGTYKARMAARASPVPSETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGALALTQENMILVLRRAGGKMTSKKLLSAFRHELQRDKANRALFKQLLQALVTGVDDALEGKVYKLKDIWMT 576

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353939 vs. uniprot

BLAST of jgi.p|Trimin1|353939 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z4B4_9STRA	9.520e-297	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 251..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..409
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..377
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 378..394
None	No IPR available	PANTHER	PTHR13011:SF0	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 1	coord: 131..555
IPR008851	Transcription initiation factor IIF, alpha subunit	PANTHER	PTHR13011	TFIIF-ALPHA	coord: 131..555
IPR011039	Transcription Factor IIF, Rap30/Rap74, interaction	SUPERFAMILY	50916	Rap30/74 interaction domains	coord: 127..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_198	contig	Contig_198:54840..63197 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353939	mRNA_16021	Tribonema minus UTEX_B_3156	mRNA	Contig_198 54056..63197 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353939|estExt_Genemark1.C_Ctg_1980006 ID=Trimin1|353939|estExt_Genemark1.C_Ctg_1980006|Name=jgi.p|Trimin1|353939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=577bp
MAEEPEAVWKLQMGSKTGGHNIGIFEPGYVTRAGGQKEAPAAMTPLFHDT
DYCEKPVYMWKEREPETWSDDEDEEKKEKEKLGAFDRPKPKGARSKTRQD
DAGYHAKSCSTAEVMMPLFPSLEDQWRRVQWHMEDARPPPHNMHFVGDRK
EQASKYVLFEVQDNEEEAVIKVIPVDEWWRFTKAAREVKMTVKEAMEKMK
KQQRGYISGNRALEAVLTATEDARTGEGDDSALTLDSDAKASRKKAAAPK
VAARAYAPKDEASDPEDRASEAEESGPEGGEPNEAEPGGDAARKPAKKRG
EEGGIDFDQPNAGAGGDAARKPVKGRGEEGGIDFDQVFSDDDAELQDVFS
DDDAELEDVYNADVGLDSSEDETEEVKEGEAAGQKLLDKALEGGGEEGEE
AEEEEAEELAGQGAGGGGKEGEEAEEEEAEEDDYTVSGTYKARMAARASP
VPSETESAAGAAAAAAEPSAAAAAGEAGGRKRSAAEAAAGAGEAKRPRPA
AAAQGALALTQENMILVLRRAGGKMTSKKLLSAFRHELQRDKANRALFKQ
LLQALVTGVDDALEGKVYKLKDIWMT*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008851	TFIIF-alpha
IPR011039	TFIIF_interaction