Trimin1|351846|estExt_Genemark1.C_Ctg_1010015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351846
Unique Name	Trimin1\|351846\|estExt_Genemark1.C_Ctg_1010015
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	231

Homology

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BLAST of jgi.p|Trimin1|351846 vs. uniprot
Match: A0A836CN04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN04_9STRA)

HSP 1 Score: 404 bits (1038), Expect = 1.310e-141
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0

Query:    1 MRGDARVNTTGRRAIVDLQYVRRPSTPPPXXXXXPPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSXXXXXXXXXXXGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVAWDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQRGNKGLAPASRAAATVDDLEAQLSNGLKAQR 230
            MRGDARVNTTGRRAIVDLQYVRRPSTPPPXXXXXPPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSXXXXXXXXXXXGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVAWDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQRGNKGLAPASRAAATVDDLEAQLSNGLKAQR
Sbjct:    1 MRGDARVNTTGRRAIVDLQYVRRPSTPPPXXXXXPPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSXXXXXXXXXXXGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVAWDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQRGNKGLAPASRAAATVDDLEAQLSNGLKAQR 230

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BLAST of jgi.p|Trimin1|351846 vs. uniprot
Match: A0A6H5L4S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S5_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.630e-5
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0

Query:   35 PPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGS 90
            PP +  R AWPGGK+VSNK +AL  FL+RK D G+ LT  Q+  L  +   N++ S
Sbjct:   30 PPPLPKRIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMTMLKRMAYPNASAS 85

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BLAST of jgi.p|Trimin1|351846 vs. uniprot
Match: D8LKQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ8_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 5.530e-5
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0

Query:   35 PPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGS 90
            PP +  R AWPGGK+VSNK +AL  FL+RK D G+ LT  Q+  L  +   N++ S
Sbjct:   30 PPPLPKRIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMAMLRRMAYPNTSVS 85

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351846 vs. uniprot

BLAST of jgi.p|Trimin1|351846 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A836CN04_9STRA	1.310e-141	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A6H5L4S5_9PHAE	3.630e-5	48.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LKQ8_ECTSI	5.530e-5	48.21	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..210

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_101	contig	Contig_101:109185..110238 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351846	mRNA_10782	Tribonema minus UTEX_B_3156	mRNA	Contig_101 109080..110339 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351846|estExt_Genemark1.C_Ctg_1010015 ID=Trimin1|351846|estExt_Genemark1.C_Ctg_1010015|Name=jgi.p|Trimin1|351846|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MRGDARVNTTGRRAIVDLQYVRRPSTPPPPTPVPPPMVAGRKAWPGGKLV
SNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSSSSSGGGSSS
SGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVA
WDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQR
GNKGLAPASRAAATVDDLEAQLSNGLKAQR*