mRNA_10782 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351846
Unique NamemRNA_10782
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351846 vs. uniprot
Match: A0A836CN04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN04_9STRA)

HSP 1 Score: 404 bits (1039), Expect = 1.340e-140
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1 
Query:  106 MRGDARVNTTGRRAIVDLQYVRRPSTPPPXXXXXPPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSXXXXXXXXXXXGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVAWDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQRGNKGLAPASRAAATVDDLEAQLSNGLKAQR 795
            MRGDARVNTTGRRAIVDLQYVRRPSTPPPXXXXXPPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSXXXXXXXXXXXGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVAWDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQRGNKGLAPASRAAATVDDLEAQLSNGLKAQR
Sbjct:    1 MRGDARVNTTGRRAIVDLQYVRRPSTPPPXXXXXPPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSXXXXXXXXXXXGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVAWDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQRGNKGLAPASRAAATVDDLEAQLSNGLKAQR 230
[Close]
BLAST of jgi.p|Trimin1|351846 vs. uniprot
Match: A0A6H5L4S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S5_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 6.610e-5
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  208 PPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGS 375
            PP +  R AWPGGK+VSNK +AL  FL+RK D G+ LT  Q+  L  +   N++ S
Sbjct:   30 PPPLPKRIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMTMLKRMAYPNASAS 85
[Close]
BLAST of jgi.p|Trimin1|351846 vs. uniprot
Match: D8LKQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ8_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 9.610e-5
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:  208 PPMVAGRKAWPGGKLVSNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGS 375
            PP +  R AWPGGK+VSNK +AL  FL+RK D G+ LT  Q+  L  +   N++ S
Sbjct:   30 PPPLPKRIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMAMLRRMAYPNTSVS 85
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351846 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CN04_9STRA1.340e-140100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L4S5_9PHAE6.610e-548.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKQ8_ECTSI9.610e-548.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_101contigContig_101:109080..110339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351846|estExt_Genemark1.C_Ctg_1010015
Hectar predicted targeting categoryother localisation
TranscriptId352168
TrackFilteredModels1
ProteinId351846
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351846gene_10782Tribonema minus UTEX_B_3156 geneContig_101 109080..110339 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10782_1exon_10782_1Tribonema minus UTEX_B_3156 exonContig_101 109080..109379 +
exon_10782_2exon_10782_2Tribonema minus UTEX_B_3156 exonContig_101 109741..110339 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10782UTR5_10782Tribonema minus UTEX_B_3156 five_prime_UTRContig_101 109080..109184 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10782CDS_10782Tribonema minus UTEX_B_3156 CDSContig_101 109185..109379 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10782UTR3_10782Tribonema minus UTEX_B_3156 three_prime_UTRContig_101 110239..110339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351846Trimin1|351846|estExt_Genemark1.C_Ctg_1010015Tribonema minus UTEX_B_3156 polypeptideContig_101 109185..110238 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10782 ID=mRNA_10782|Name=jgi.p|Trimin1|351846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=899bp|location=Sequence derived from alignment at Contig_101:109080..110339+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCACGGTCTGTATTCACATTTTCCCATCAAAATCCTGCGCATTCACAAA
ATGCACTGGTCTCTGTATCGTGGCTCAATGCGCAGCGAGCGGGCAGCAGC
GTAGGATGAGAGGAGACGCTCGGGTCAACACCACTGGCAGGCGTGCCATC
GTCGATCTTCAATACGTGCGCAGGCCTAGCACGCCGCCGCCTCCAACGCC
CGTGCCTCCGCCGATGGTGGCCGGTCGAAAGGCATGGCCGGGCGGAAAGC
TTGTGTCCAACAAGCGGCAGGCGCTATACAAATTCCTGAAGCGAAAGCAG
GACAACGGGGAGCAGCTGACAGATGCTCAGCTTCACACGCTCGCCGCGAT
AGTGCGGGAGAACAGCACTGGAAGCAGCAGCAGCAGCGGAGGCGGCAGCA
GCAGTAGCGGCAGCACCAGGAATTTTAGCAAACAGGACATAAATGGGCCG
CTGCTGCTGAATCAGCTTGCGGCGAAAGCGGGCATTGTTGAAGTGGCAGG
GCTCAGCAGCAGCGACAGTTACAGCGATGAAGGCTTCGAGGTGGAGATGG
TGGCGTGGGATGCGCGGCCCAAGCCCCGATTAACAAAACCTAGGGCTTTT
GCCGCAAAGACTTCTGCTGCATCGAAAAAGGTGCTCAAGAAGATCAACTT
CAAAAAGGGCAAATATGCGCCGAAGCAGCGGAACAGGGGGGGCAGGGCGC
AGCGTGGCAACAAGGGTTTAGCGCCTGCCAGCAGAGCAGCGGCAACGGTC
GACGATCTAGAAGCGCAGCTATCGAACGGTCTGAAAGCGCAGCGTTGATG
GATGATTCGGTGATTCTGTCCAGCGGTTCGAGTGGCTTGTGCTTTGTGCA
AATGGCGTTATATTGAGCACATCCACTGGTTTCGGGGGGCACTACATAG
back to top

protein sequence of jgi.p|Trimin1|351846

>Trimin1|351846|estExt_Genemark1.C_Ctg_1010015 ID=Trimin1|351846|estExt_Genemark1.C_Ctg_1010015|Name=jgi.p|Trimin1|351846|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
MRGDARVNTTGRRAIVDLQYVRRPSTPPPPTPVPPPMVAGRKAWPGGKLV
SNKRQALYKFLKRKQDNGEQLTDAQLHTLAAIVRENSTGSSSSSGGGSSS
SGSTRNFSKQDINGPLLLNQLAAKAGIVEVAGLSSSDSYSDEGFEVEMVA
WDARPKPRLTKPRAFAAKTSAASKKVLKKINFKKGKYAPKQRNRGGRAQR
GNKGLAPASRAAATVDDLEAQLSNGLKAQR*
back to top

mRNA from alignment at Contig_101:109080..110339+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10782 ID=mRNA_10782|Name=jgi.p|Trimin1|351846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1260bp|location=Sequence derived from alignment at Contig_101:109080..110339+ (Tribonema minus UTEX_B_3156 )
GGCACGGTCTGTATTCACATTTTCCCATCAAAATCCTGCGCATTCACAAA
ATGCACTGGTCTCTGTATCGTGGCTCAATGCGCAGCGAGCGGGCAGCAGC
GTAGGATGAGAGGAGACGCTCGGGTCAACACCACTGGCAGGCGTGCCATC
GTCGATCTTCAATACGTGCGCAGGCCTAGCACGCCGCCGCCTCCAACGCC
CGTGCCTCCGCCGATGGTGGCCGGTCGAAAGGCATGGCCGGGCGGAAAGC
TTGTGTCCAACAAGCGGCAGGCGCTATACAAATTCCTGAAGCGAAAGCAG
GTGGGGACCTTTGACGCGTGTATAGTGAAGTGCTTAGGTTTTGATGCTGA
GGATGATATACTATGCTATCGCCATCAGTGTTGAATGTTCCACACAAGTC
TATACGTTCTGTTTCTTTAGGCTTTCGTAAAGTGTGTACTACCTGAACGC
ACCAGCTTCTTGAGTTCATAGCATGTCCGCAGTTCATTCAACAATGTATG
GCCGCGTTATACTGACGCACTGCTCTCTTGTGCGTTAGCCATTGCGAGCA
ACACTTTGGTACACTGCCATGCTGAGCAGTGTGGAACTTGCCCTTTCTCA
ACTGAGCACTGATTCACACGCTGACTGTGCATCTCAACTTCAACTACTCT
CCCCGCTGCAGGACAACGGGGAGCAGCTGACAGATGCTCAGCTTCACACG
CTCGCCGCGATAGTGCGGGAGAACAGCACTGGAAGCAGCAGCAGCAGCGG
AGGCGGCAGCAGCAGTAGCGGCAGCACCAGGAATTTTAGCAAACAGGACA
TAAATGGGCCGCTGCTGCTGAATCAGCTTGCGGCGAAAGCGGGCATTGTT
GAAGTGGCAGGGCTCAGCAGCAGCGACAGTTACAGCGATGAAGGCTTCGA
GGTGGAGATGGTGGCGTGGGATGCGCGGCCCAAGCCCCGATTAACAAAAC
CTAGGGCTTTTGCCGCAAAGACTTCTGCTGCATCGAAAAAGGTGCTCAAG
AAGATCAACTTCAAAAAGGGCAAATATGCGCCGAAGCAGCGGAACAGGGG
GGGCAGGGCGCAGCGTGGCAACAAGGGTTTAGCGCCTGCCAGCAGAGCAG
CGGCAACGGTCGACGATCTAGAAGCGCAGCTATCGAACGGTCTGAAAGCG
CAGCGTTGATGGATGATTCGGTGATTCTGTCCAGCGGTTCGAGTGGCTTG
TGCTTTGTGCAAATGGCGTTATATTGAGCACATCCACTGGTTTCGGGGGG
CACTACATAG
back to top

Coding sequence (CDS) from alignment at Contig_101:109080..110339+

>mRNA_10782 ID=mRNA_10782|Name=jgi.p|Trimin1|351846|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_101:109080..110339+ (Tribonema minus UTEX_B_3156 )
ATGAGAGGAGACGCTCGGGTCAACACCACTGGCAGGCGTGCCATCGTCGA
TCTTCAATACGTGCGCAGGCCTAGCACGCCGCCGCCTCCAACGCCCGTGC
CTCCGCCGATGGTGGCCGGTCGAAAGGCATGGCCGGGCGGAAAGCTTGTG
TCCAACAAGCGGCAGGCGCTATACAAATTCCTGAAGCGAAAGCAGGACAA
CGGGGAGCAGCTGACAGATGCTCAGCTTCACACGCTCGCCGCGATAGTGC
GGGAGAACAGCACTGGAAGCAGCAGCAGCAGCGGAGGCGGCAGCAGCAGT
AGCGGCAGCACCAGGAATTTTAGCAAACAGGACATAAATGGGCCGCTGCT
GCTGAATCAGCTTGCGGCGAAAGCGGGCATTGTTGAAGTGGCAGGGCTCA
GCAGCAGCGACAGTTACAGCGATGAAGGCTTCGAGGTGGAGATGGTGGCG
TGGGATGCGCGGCCCAAGCCCCGATTAACAAAACCTAGGGCTTTTGCCGC
AAAGACTTCTGCTGCATCGAAAAAGGTGCTCAAGAAGATCAACTTCAAAA
AGGGCAAATATGCGCCGAAGCAGCGGAACAGGGGGGGCAGGGCGCAGCGT
GGCAACAAGGGTTTAGCGCCTGCCAGCAGAGCAGCGGCAACGGTCGACGA
TCTAGAAGCGCAGCTATCGAACGGTCTGAAAGCGCAGCGTTGA
back to top