mRNA_16031 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132588
Unique NamemRNA_16031
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: A0A836CIK2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIK2_9STRA)

HSP 1 Score: 342 bits (877), Expect = 5.360e-119
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
Query:    1 MQHLKIDEKLGEGSFGVVYKGQYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYGILVMPLVSTSLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCSANTGFTFIGTPGFM 516
            MQHLKIDEKLGEGSFGVVYKGQYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYGILVMPLVSTSLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCSANTGFTFIGTPGFM
Sbjct:    1 MQHLKIDEKLGEGSFGVVYKGQYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYGILVMPLVSTSLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCSANTGFTFIGTPGFM 172          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: A0A446UDJ5_TRITD (Protein kinase domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446UDJ5_TRITD)

HSP 1 Score: 95.9 bits (237), Expect = 6.770e-20
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKG--QYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCS----ANTGFTFIGTPGFM 516
            DEKLGEG FG VY+G  Q     VAIK++ K SS+ R  YIA++T +  LRHRN+V +V   +     +LV  L++  SL  +L  +++       L +     I     SAL Y+H   + CV H DIKP N +L+ S       A LGD GL+R+ +    A+T  T  GT G+M
Sbjct:  236 DEKLGEGGFGAVYRGFLQDQGLHVAIKRVSKTSSQGRREYIAEVTIIGRLRHRNLVQLVGWCHKADELLLVYKLMTNGSLDAHLYNSTEV------LTWATRYQIILGMGSALTYLHQEWEQCVVHRDIKPSNVMLDSS-----FNAKLGDFGLARLVNHSSGAHTTTTLAGTKGYM 401          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: A0A453L427_AEGTS (Protein kinase domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453L427_AEGTS)

HSP 1 Score: 92.8 bits (229), Expect = 5.550e-19
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKG--QYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCS----ANTGFTFIGTPGFM 516
            +EKLGEG FG VY+G  Q     VAIK++ K S++ R  YIA++T +  LRHRN+V +V   +     +LV  L++  SL  +L  +++       L +     I     SAL Y+H   + CV H DIKP N +L+ S       A LGD GL+R+ +    A+T  T  GT G+M
Sbjct:   83 EEKLGEGGFGAVYRGFLQDQGLHVAIKRVSKTSNQGRREYIAEVTIIGRLRHRNLVQLVGWCHKADELLLVYELMTNGSLDAHLYNSTEV------LTWATRYQIILGMGSALTYLHQEWEQCVVHRDIKPSNVMLDSS-----FNAKLGDFGLARIVNHSSGAHTTTTLAGTKGYM 248          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: A0A3B6MTD0_WHEAT (Protein kinase domain-containing protein n=7 Tax=Triticinae TaxID=1648030 RepID=A0A3B6MTD0_WHEAT)

HSP 1 Score: 92.8 bits (229), Expect = 9.040e-19
Identity = 67/177 (37.85%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKG--QYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCS----ANTGFTFIGTPGFM 516
            +EKLGEG FG VY+G  Q     VAIK++ K S++ R  YIA++T +  LRHRN+V +V   +     +LV  L++  SL  +L  +++       L +     I     SAL Y+H   + CV H DIKP N +L+ S       A LGD GL+R+ +    A+T  T  GT G+M
Sbjct:  374 EEKLGEGGFGAVYRGFLQDQGLHVAIKRVSKTSNQGRREYIAEVTIIGRLRHRNLVQLVGWCHKADELLLVYELMTNGSLDAHLYNSTEV------LTWATRYQIILGMGSALTYLHQEWEQCVVHRDIKPSNVMLDSS-----FNAKLGDFGLARIVNHSSGAHTTTTLAGTKGYM 539          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: UPI001D0350DB (L-type lectin-domain containing receptor kinase IX.1-like n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D0350DB)

HSP 1 Score: 91.7 bits (226), Expect = 2.230e-18
Identity = 69/176 (39.20%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKGQY--MLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRM---CSANTGFTFIGTPGFM 516
            +EKLGEG FG VY+G        VAIK++ K SS+ R  Y+A++T +  LRHRN+V +V   +     +LV  L++  SL  +L  ASK+      L +     I     SALLY+H   + CV H DIKP N +L+ S       A LGD GL+R+   C      T  GT G+M
Sbjct:  257 EEKLGEGGFGAVYRGHLHEQGLHVAIKRVSKTSSQGRREYVAEVTIIGRLRHRNLVQLVGWCHEADELLLVYELMTNGSLDDHLY-ASKS-----VLAWPARYRIILGMGSALLYLHQEWEQCVVHRDIKPSNVMLDAS-----FNARLGDFGLARLVDHCRGAHTTTLAGTRGYM 421          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: UPI001F5CC7E8 (L-type lectin-domain containing receptor kinase IX.1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CC7E8)

HSP 1 Score: 91.3 bits (225), Expect = 3.220e-18
Identity = 67/176 (38.07%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKG--QYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCSANTG-FTFI--GTPGFM 516
            +EKLGEG FG VY+G        VAIK++ K SS+ R  YIA++T +  LRHRN+V +V   +     +LV  L+   SL  +L  + K       L +     I     SA+LY+H   + CV H DIKP N +L+ S       A LGD GL+R+   + G +T +  GT G+M
Sbjct:  359 EEKLGEGGFGAVYRGFLHEQGLHVAIKRVSKTSSQGRREYIAEVTIIGRLRHRNLVQLVGWCHNADELLLVYELMEKGSLDAHLYNSKKM------LTWSARYKIILGMGSAVLYLHQECEQCVVHRDIKPSNVMLDSS-----FNAKLGDFGLARLVDHSCGGYTTMLAGTKGYM 523          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: UPI001F5DCFE3 (L-type lectin-domain containing receptor kinase IX.1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5DCFE3)

HSP 1 Score: 90.5 bits (223), Expect = 5.680e-18
Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKGQYMLA--PVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCS----ANTGFTFIGTPGFM 516
            +EKLGEG FG VY+G        VAIK++ K SS+ R  YIA++T +  LRHRN+V +V   +     ILV  L++  SL  +L  + K       L +     I     SAL+Y+H   + CV H DIKP N +L+      +  A LGD GL+R+      A+T     GT G+M
Sbjct:  362 EEKLGEGGFGAVYRGLLRDEGLQVAIKRVSKTSSQGRREYIAEVTIIGRLRHRNLVQLVGWCHKADELILVYELMTNDSLDVHLYNSEKI------LTWAIRHKIILGIGSALMYLHQEWEQCVVHRDIKPSNVMLD-----SLFNAKLGDFGLARLVDHSRDAHTTAVIAGTRGYM 527          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: UPI001F5E2002 (L-type lectin-domain containing receptor kinase IX.1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5E2002)

HSP 1 Score: 90.5 bits (223), Expect = 5.730e-18
Identity = 67/176 (38.07%), Postives = 94/176 (53.41%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKG--QYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCSANTG-FTFI--GTPGFM 516
            +EKLGEG FG VY+G        VAIK++ K SS+ R  YIA++T +  LRHRN+V +V   +     +LV  L+   SL  +L  + K       L +     I     SA+LY+H   + CV H DIKP N +L+ S       A LGD GL+R+   + G +T +  GT G+M
Sbjct:  359 EEKLGEGGFGAVYRGFLHEQGLHVAIKRVSKTSSQGRREYIAEVTIIGRLRHRNLVQLVGWCHNADELLLVYELMEKGSLDAHLYNSKKM------LTWSARYKIILGMGSAVLYLHQEWEQCVVHRDIKPSNVMLDSS-----FNAKLGDFGLARLVDHSCGGYTTMLAGTKGYM 523          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: UPI001F5CDB18 (L-type lectin-domain containing receptor kinase IX.1-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CDB18)

HSP 1 Score: 90.1 bits (222), Expect = 7.770e-18
Identity = 67/177 (37.85%), Postives = 93/177 (52.54%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKGQY--MLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYG----ILVMPLVST-SLTGYLETASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCS----ANTGFTFIGTPGFM 516
            +EKLGEG FG VY+G        VAIK++ K SS+ R  YIA++T +  LRHRN+V +V   +     +LV  L++  SL  +L  + K       L +     I  +  SAL+Y+H     CV H DIKP N +L+ S       A LGD GL+R+      A+T     GT G+M
Sbjct:  340 EEKLGEGGFGAVYRGLLHDQGLQVAIKRVSKTSSQGRREYIAEVTIIGRLRHRNLVQLVGWCHKADKLLLVYELMTNDSLDVHLYNSEKI------LTWAIRHKIILDIGSALMYLHQEWDQCVVHRDIKPSNVMLDSS-----FNAKLGDFGLARLVDHSRDAHTTAVIAGTMGYM 505          
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Match: F2E6D0_HORVV (Predicted protein n=2 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E6D0_HORVV)

HSP 1 Score: 89.4 bits (220), Expect = 1.450e-17
Identity = 66/173 (38.15%), Postives = 93/173 (53.76%), Query Frame = 1
Query:   19 DEKLGEGSFGVVYKG--QYMLAPVAIKKIKKMSSRARETYIADLTALLSLRHRNIVSIVAHGYGILVMPLVSTSLT-GYLET-ASKTRPVGRALEYGELKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGDVGLSRMCSANTGF---TFIGTPGFM 516
            +EKLGEG FG VY+G        VAIK++ KMSS+ R  YIA++T +  LRHRN+V +V   +    + LV   +T G L+    K+R +   L +     IT     AL+Y+H   + CV H DIKP N +L+ S       A LGD GL+R+   + G       GT G++
Sbjct:  368 EEKLGEGGFGAVYRGFLHDRGLHVAIKRVSKMSSQGRREYIAEVTTIGRLRHRNLVQLVGWCHKADELLLVYELMTNGSLDVHLYKSRDI---LTWPIRYKITLGMGHALMYLHQEWEQCVVHRDIKPSNVMLDSS-----FDARLGDFGLARLVDHSRGAHTTMLAGTKGYL 532          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132588 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIK2_9STRA5.360e-119100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A446UDJ5_TRITD6.770e-2038.98Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A453L427_AEGTS5.550e-1937.85Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A3B6MTD0_WHEAT9.040e-1937.85Protein kinase domain-containing protein n=7 Tax=T... [more]
UPI001D0350DB2.230e-1839.20L-type lectin-domain containing receptor kinase IX... [more]
UPI001F5CC7E83.220e-1838.07L-type lectin-domain containing receptor kinase IX... [more]
UPI001F5DCFE35.680e-1837.85L-type lectin-domain containing receptor kinase IX... [more]
UPI001F5E20025.730e-1838.07L-type lectin-domain containing receptor kinase IX... [more]
UPI001F5CDB187.770e-1837.85L-type lectin-domain containing receptor kinase IX... [more]
F2E6D0_HORVV1.450e-1738.15Predicted protein n=2 Tax=Hordeum vulgare subsp. v... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_198contigContig_198:108937..109452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132588|gw1.198.9.1
DescriptionProtein tyrosine kinase
COG categoryT
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0515@1|root,2QTX3@2759|Eukaryota,37QMV@33090|Viridiplantae,3G7RI@35493|Streptophyta,3M2DK@4447|Liliopsida,3I4GJ@38820|Poales
Evalue5.61e-20
Seed ortholog38727.Pavir.Cb00237.1.p
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-82 protein kinase
Ec32 orthologEc-06_005990.1
TranscriptId132910
TrackFilteredModels1
ProteinId132588
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132588gene_16031Tribonema minus UTEX_B_3156 geneContig_198 108937..109452 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16031_1exon_16031_1Tribonema minus UTEX_B_3156 exonContig_198 108937..109452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16031CDS_16031Tribonema minus UTEX_B_3156 CDSContig_198 108937..109452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132588Trimin1|132588|gw1.198.9.1Tribonema minus UTEX_B_3156 polypeptideContig_198 108937..109452 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16031 ID=mRNA_16031|Name=jgi.p|Trimin1|132588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_198:108937..109452- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCACTTGAAAATCGATGAAAAACTCGGTGAGGGCAGCTTTGGTGT
AGTTTACAAGGGACAGTATATGCTCGCCCCGGTGGCGATCAAGAAGATCA
AGAAAATGTCGTCACGTGCCAGGGAAACGTACATTGCAGATCTGACTGCA
CTTCTGTCCCTGCGACATCGCAACATTGTGTCTATAGTTGCACACGGATA
TGGCATTCTTGTCATGCCGTTGGTGAGCACGAGCCTTACGGGCTACCTGG
AGACCGCGAGTAAGACCAGGCCAGTGGGTCGAGCGCTTGAGTACGGCGAA
TTAAAAGCGATCACATGCAACTGTTGCAGTGCGTTGTTGTACATGCACCA
TCATGTCAAGAGCTGTGTCACGCACAACGACATCAAGCCTGATAACACTT
TGCTGGAGTTGTCACCGTCTGGTGAGGTAGTCAAAGCCATGCTTGGCGAT
GTGGGTCTCTCTAGAATGTGTAGCGCTAACACAGGGTTTACCTTCATTGG
CACTCCGGGCTTCATG
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protein sequence of jgi.p|Trimin1|132588

>Trimin1|132588|gw1.198.9.1 ID=Trimin1|132588|gw1.198.9.1|Name=jgi.p|Trimin1|132588|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=172bp
MQHLKIDEKLGEGSFGVVYKGQYMLAPVAIKKIKKMSSRARETYIADLTA
LLSLRHRNIVSIVAHGYGILVMPLVSTSLTGYLETASKTRPVGRALEYGE
LKAITCNCCSALLYMHHHVKSCVTHNDIKPDNTLLELSPSGEVVKAMLGD
VGLSRMCSANTGFTFIGTPGFM
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mRNA from alignment at Contig_198:108937..109452-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16031 ID=mRNA_16031|Name=jgi.p|Trimin1|132588|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=516bp|location=Sequence derived from alignment at Contig_198:108937..109452- (Tribonema minus UTEX_B_3156 )
ATGCAGCACTTGAAAATCGATGAAAAACTCGGTGAGGGCAGCTTTGGTGT AGTTTACAAGGGACAGTATATGCTCGCCCCGGTGGCGATCAAGAAGATCA AGAAAATGTCGTCACGTGCCAGGGAAACGTACATTGCAGATCTGACTGCA CTTCTGTCCCTGCGACATCGCAACATTGTGTCTATAGTTGCACACGGATA TGGCATTCTTGTCATGCCGTTGGTGAGCACGAGCCTTACGGGCTACCTGG AGACCGCGAGTAAGACCAGGCCAGTGGGTCGAGCGCTTGAGTACGGCGAA TTAAAAGCGATCACATGCAACTGTTGCAGTGCGTTGTTGTACATGCACCA TCATGTCAAGAGCTGTGTCACGCACAACGACATCAAGCCTGATAACACTT TGCTGGAGTTGTCACCGTCTGGTGAGGTAGTCAAAGCCATGCTTGGCGAT GTGGGTCTCTCTAGAATGTGTAGCGCTAACACAGGGTTTACCTTCATTGG CACTCCGGGCTTCATG
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Coding sequence (CDS) from alignment at Contig_198:108937..109452-

>mRNA_16031 ID=mRNA_16031|Name=jgi.p|Trimin1|132588|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=516bp|location=Sequence derived from alignment at Contig_198:108937..109452- (Tribonema minus UTEX_B_3156 )
ATGCAGCACTTGAAAATCGATGAAAAACTCGGTGAGGGCAGCTTTGGTGT
AGTTTACAAGGGACAGTATATGCTCGCCCCGGTGGCGATCAAGAAGATCA
AGAAAATGTCGTCACGTGCCAGGGAAACGTACATTGCAGATCTGACTGCA
CTTCTGTCCCTGCGACATCGCAACATTGTGTCTATAGTTGCACACGGATA
TGGCATTCTTGTCATGCCGTTGGTGAGCACGAGCCTTACGGGCTACCTGG
AGACCGCGAGTAAGACCAGGCCAGTGGGTCGAGCGCTTGAGTACGGCGAA
TTAAAAGCGATCACATGCAACTGTTGCAGTGCGTTGTTGTACATGCACCA
TCATGTCAAGAGCTGTGTCACGCACAACGACATCAAGCCTGATAACACTT
TGCTGGAGTTGTCACCGTCTGGTGAGGTAGTCAAAGCCATGCTTGGCGAT
GTGGGTCTCTCTAGAATGTGTAGCGCTAACACAGGGTTTACCTTCATTGG
CACTCCGGGCTTCATG
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