Trimin1|353937|estExt_Genemark1.C_Ctg_1970027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353937
Unique NameTrimin1|353937|estExt_Genemark1.C_Ctg_1970027
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length251
Homology
BLAST of jgi.p|Trimin1|353937 vs. uniprot
Match: A0A836CHX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX3_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 3.700e-151
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAAAGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR 250
            MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAAAGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR
Sbjct:    1 MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAAAGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGGGXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR 250          
BLAST of jgi.p|Trimin1|353937 vs. uniprot
Match: A0A836CM36_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM36_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.470e-46
Identity = 96/195 (49.23%), Postives = 114/195 (58.46%), Query Frame = 0
Query:   65 LPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQYLRLGGG--------GXXGRXXXXXXRRXXXXXXXXXXXXXXXXXXXXAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQV-VDYVPR 250
            LPPLRI AN +P +       R +  R+ S+YQNAA V+R     EP+A++A AEF+DW  RT+ARNLEGHAFEFD RQWQT++AKWW RALEADE A+LEFA QY R+  G        G                                AG  LA V V TE IEDCAVNGRWQ++Y DDG Q  V+Y PR
Sbjct:    4 LPPLRIQANFAPIAP------RTLLSRDSSSYQNAAQVER---SLEPIASLAYAEFRDWTQRTMARNLEGHAFEFDRRQWQTAIAKWWQRALEADEAAKLEFAAQYNRIVAGRGGDAFDTGAAAEEEWGNIYFDCSSCLGGGAGGVFGGGDEFAGMTLAPVRVRTE-IEDCAVNGRWQLSYDDDGMQANVEYRPR 188          
BLAST of jgi.p|Trimin1|353937 vs. uniprot
Match: D7G502_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G502_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.560e-12
Identity = 41/104 (39.42%), Postives = 56/104 (53.85%), Query Frame = 0
Query:   67 PLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAATVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAKWWGRALEADETARLEFARQY 170
            PLRI  N  P+    P+        +  TY    T +  ++     AAMA  EF D++ RT+ RNL G  F+FDTRQW +S+ KWW RA+E D  A+ +  R Y
Sbjct:   84 PLRITPNFQPQEKRRPK----FNVDKDVTYGAFLTEESFDI-----AAMAWEEFSDFLRRTVERNLNGAQFDFDTRQWSSSIRKWWSRAVEMDVQAKADLFRLY 178          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353937 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CHX3_9STRA3.700e-151100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CM36_9STRA6.470e-4649.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G502_ECTSI4.560e-1239.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_197contigContig_197:244690..246369 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353937mRNA_16445Tribonema minus UTEX_B_3156 mRNAContig_197 244518..246369 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353937|estExt_Genemark1.C_Ctg_1970027 ID=Trimin1|353937|estExt_Genemark1.C_Ctg_1970027|Name=jgi.p|Trimin1|353937|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=251bp
MSLAWLALALATALASGYVAQTALPAAPRGSADAAQQQQAWVPSSEDIAA
AGAAHRHHNEKQAVLPPLRIMANLSPRSSGGPRGMRNMQEREFSTYQNAA
TVDRLNLHFEPMAAMACAEFKDWVARTLARNLEGHAFEFDTRQWQTSVAK
WWGRALEADETARLEFARQYLRLGGGGGGGRGGAAGGRRGAPGGRGRGAA
GGGQGGEGGAGARLAAVPVYTEEIEDCAVNGRWQVTYGDDGAQVVDYVPR
*
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