Trimin1|353936|estExt_Genemark1.C_Ctg_1970023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353936
Unique NameTrimin1|353936|estExt_Genemark1.C_Ctg_1970023
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length1101
Homology
BLAST of jgi.p|Trimin1|353936 vs. uniprot
Match: A0A836CID0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CID0_9STRA)

HSP 1 Score: 1828 bits (4736), Expect = 0.000e+0
Identity = 1100/1100 (100.00%), Postives = 1100/1100 (100.00%), Query Frame = 0
Query:    1 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ 1100
            MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ
Sbjct:    1 MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPSVPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDTRSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGSSAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAFVIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWEQASAALLRAHGGGSXXXXXXXXXXXXXXXXXXXXXXXDADAAAQFARVVLPQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAAAAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLLLRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADGAAPLLSTAWQHFCAVAEALRGSGGDGAAAFSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGHSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXGMAFAVTTDARLFDAVAGAGDTLAAARAEAAWRDAAXXXXXXDGGGVQEMGGAFTDAPALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLVGGPRAGPARVLLTARWLAARSGXXXXXXXXXVPALRVIAFTRGDAAEVAELAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCAAASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLAMLAAQXXXXXXXXXXXXLLQAETPRAGAASPGSPSSPQ 1100          
BLAST of jgi.p|Trimin1|353936 vs. uniprot
Match: A0A482SI19_9ARCH (Thioredoxin domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI19_9ARCH)

HSP 1 Score: 139 bits (350), Expect = 1.360e-31
Identity = 84/241 (34.85%), Postives = 125/241 (51.87%), Query Frame = 0
Query:  816 VMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAA 1056
            + ++   VL+G V    +SEPLP             K + G   R+VG +    V++   D L+A+  P CA  + L     +L  A+ SESR+LIA +D +ANDLP++  V  YP +LWFPAR KPY ++++P P  YW+     +++ GF+ +D               SSFD  +L +   + + +L    D   A  E +   + RN  R  Y  P +DW  GEVVFDG+RWH+ AA
Sbjct:  172 LQDFVVGVLTGLVPKVLKSEPLP-------------KKQSGVAQRVVGSNVLDVVSKIDTDVLLAITVPGCAHCKRLLPAYELLGRAVQSESRILIARIDASANDLPSTWGVSDYPTLLWFPARDKPYKESTVPTPRQYWDAGFSLQELAGFVQRD---------------SSFDPKSLRIATAEQLSSLQGDEDIYRAKFEEEERVQRRNEGRIVYEVPFVDWLLGEVVFDGKRWHLGAA 384          
BLAST of jgi.p|Trimin1|353936 vs. uniprot
Match: A0A7S3XLQ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLQ2_HETAK)

HSP 1 Score: 122 bits (307), Expect = 1.530e-26
Identity = 93/282 (32.98%), Postives = 131/282 (46.45%), Query Frame = 0
Query:  782 AIVAHDRESGLRYHMPAPPPSAPVTAVXXXTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPEPAPYW-EDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRRWHIAAAFAAPLA 1062
            A++AHD     R+         P T        ++M + + VL G ++P+ +SEP+P             K   G V +LVG +F  EV++ G D LV V +P CA S AL     +L  AL  E RV++A +DG ANDLP  + V AYP +LWFPA  KPY     P+P     E     +++L F+ ++AS                     A P+   +D L      L   A  +A W LRN  R  +    +D+  G+VVFDG RW I    A  L+
Sbjct:   77 ALIAHDPAQDTRF---------PSTYEEPLEYDNIMSFMSDVLEGRLKPSFKSEPVP-------------KKNDGPVKKLVGSTFVEEVSKEGVDVLVKVYAPWCAHSAALAPAYELLGRALGGEPRVVVAEIDGAANDLPPHLDVQAYPDLLWFPAADKPYPGKGAPQPRALGREPGRSLQELLAFVRREAS-------------PGGPPLRAATPEQ--LDTLAQEAPALEEQALRRARWALRNKDRVVFEPALVDYLVGDVVFDGCRWMIGLVVALVLS 321          
BLAST of jgi.p|Trimin1|353936 vs. uniprot
Match: A0A7S3GYC8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYC8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.980e-21
Identity = 75/241 (31.12%), Postives = 113/241 (46.89%), Query Frame = 0
Query:  821 AAVLSGAVRPTPRSEPLPPPRAGGGGLQGQGKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLAHALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYA--DASLPEPAPYWEDALGFEDMLGFIVQDASRVFXXXXXXXXXQSSFDRATLAVPDWQGMDALYAARDELLAAAETQAHWELRNARRAHYT-SPRLDWAFGEVVFDGRRWHIAAAFA 1058
            A V++G V    ++EP+P P                 V   VG +    V + G+D L+ V +P C   + L     +LA A+ +E R++IA ++G  ND+P+S  V AYP +LWF A  K     D S   P  YW+      ++  F+ ++ S               FD  +L V   + + +L  A + L    E +   ++RN  R  Y  SP LD+  GEVVFDG+RWH+A   A
Sbjct:    1 AGVITGVVPKVVKTEPVPKP-------------SNNLVVTAVGSNVMDIVNQPGKDVLLVVFAPWCTHCKKLLPTYEILARAVQNEPRIVIAKINGETNDIPSSWGVKAYPTLLWFRASDKEAVKGDFSALLPRDYWDAGYSLHELASFVQREGS---------------FDLKSLRVASNEQLASLQGAEEALRVQYEIEERHQMRNMGRVVYEDSPLLDYFLGEVVFDGKRWHVAMTAA 213          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353936 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CID0_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SI19_9ARCH1.360e-3134.85Thioredoxin domain-containing protein n=1 Tax=arch... [more]
A0A7S3XLQ2_HETAK1.530e-2632.98Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3GYC8_9STRA7.980e-2131.12Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 852..956
e-value: 1.1E-9
score: 40.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 266..286
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 830..852
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1080..1100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..526
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 858..945

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_197contigContig_197:214685..224028 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353936mRNA_16441Tribonema minus UTEX_B_3156 mRNAContig_197 214515..224028 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353936|estExt_Genemark1.C_Ctg_1970023 ID=Trimin1|353936|estExt_Genemark1.C_Ctg_1970023|Name=jgi.p|Trimin1|353936|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1101bp
MKAKANRPPRRRTLDPSFGARCDTGGSGGHSGAWGWRWWQHSHPVRPPPS
VPTTKAYGSSGAKGGTGPARGSCGGGYWRSGGGSGCSSSHNSVVSPASDT
RSCAATGPHTSSTQMSAEDDELDDSAGAHPYGGDGGSSDSTDWHQCSGGS
SAAELVELTTASAAHDVASTAHGGDGRQACSMGICCSSSSSNGSHTEGAF
VIVARHTASKPDVLDLDDGNLETLLDTYPYLALAVLDDSPRSLALAAVWE
QASAALLRAHGGGSGGGGGRGGGGSGGGGGVGGGDGGDADAAAQFARVVL
PQQPGVHEWLAMYEGVPKQTRRERARCRDGRARRTHGALLPCHRAQAGAA
AAPAAVVIRHGAVYEYGGSLDAPQRAAAYVLEDSQPVVARVRSVRGVGLL
LRQGTVAVRSDADGHRWRTAAAPAPSRVVLGLFPEGAADGGCADAYAADG
AAPLLSTAWQHFCAVAEALRGSGGDGAAAFSSGSAGGGGGDGGGGGGSSG
SGARAGGNGDGHSSDDGGSSGGGGSGGSSGCSGGSGCSGGSGGMAFAVTT
DARLFDAVAGAGDTLAAARAEAAWRDAAAAAAAGDGGGVQEMGGAFTDAP
ALVLLEPTAPILSGDAAAHYSTHTYTGPLARRPLLDWVLATAPPPLTRLV
GGPRAGPARVLLTARWLAARSGGGGGGGGGGVPALRVIAFTRGDAAEVAE
LAAAACALRGAAAFGYVVGGSFEEASAAAACPQQRIASLTKTAQLKLQCA
AASPWLPAGVADAAAARAYGVDTTARRRAAAAIVAHDRESGLRYHMPAPP
PSAPVTAVTAVTATDVMEWAAAVLSGAVRPTPRSEPLPPPRAGGGGLQGQ
GKGEGGDVARLVGLSFAAEVARAGRDALVAVVSPRCAASRALRVELAVLA
HALASESRVLIAYVDGTANDLPASVRVDAYPAVLWFPARGKPYADASLPE
PAPYWEDALGFEDMLGFIVQDASRVFEDVLGVVIQQSSFDRATLAVPDWQ
GMDALYAARDELLAAAETQAHWELRNARRAHYTSPRLDWAFGEVVFDGRR
WHIAAAFAAPLAMLAAQWWRRRRKRRRRRLLQAETPRAGAASPGSPSSPQ
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf