mRNA_16423 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179627
Unique NamemRNA_16423
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A835Z6J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J6_9STRA)

HSP 1 Score: 185 bits (470), Expect = 1.210e-59
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV 261
            MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV
Sbjct:    1 MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV 87
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A835ZEI1_9STRA (Ribonuclease H-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI1_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.090e-53
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV 261
            MEHYRIMLAGCSVYFDRAVLLH YPRLR+Y+GHKTIELSSLL IVRRWRPDLLRSLPPTQECHRAL+DVMEAVSLLRWFWRSFLV V
Sbjct:  170 MEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 256
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A835Z4U2_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U2_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.310e-40
Identity = 63/86 (73.26%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVG 258
            + H+R+MLAGCSVYFDRAVLLH YPRLR  +GHKTIELSSLL I R+WRPD+L +LPP Q+ HRALIDV+E+VSLLRWFWR  +V 
Sbjct:  153 ISHFRVMLAGCSVYFDRAVLLHIYPRLRNLIGHKTIELSSLLEIARKWRPDILATLPPAQDAHRALIDVLESVSLLRWFWRFIVVA 238
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.840e-29
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:   10 YRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRW 234
            YR+M AGCS YFDR V+L+R+P LR Y+ HKTI+++S+L I RRWRPDLLRSLP  Q  HRAL DV+E++ LLRW
Sbjct:  186 YRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRW 260
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.480e-26
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   10 YRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRW 234
            +R+M AGCS YFDR  +L R+P LR YV HKTI+++S+L I RRWRPDLLR LP  Q  HRAL DV+E+V LLRW
Sbjct:  197 FRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRW 271
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.510e-15
Identity = 33/82 (40.24%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   13 RIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVG 258
            + +LAG +VYFDR  LL  +P L+ +  ++ +++S+ L +VRRWRPD+   LP     HRA  D+++++SL+++F  +FL G
Sbjct:  188 KCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKETFLNG 269
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: L0P9G8_PNEJ8 (Exonuclease domain-containing protein n=3 Tax=Pneumocystis TaxID=4753 RepID=L0P9G8_PNEJ8)

HSP 1 Score: 62.0 bits (149), Expect = 5.630e-10
Identity = 27/79 (34.18%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:   19 MLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLV 255
            +LAG SVY DRA L    PR+  Y+ ++ I++S++  + RRW   + ++ P  +  HRA+ D+ E++  LR++ +++L+
Sbjct:   91 ILAGNSVYVDRAFLFRYIPRIVEYLHYRVIDVSTIKELARRWNYYVFQNAPKKKANHRAMDDIRESIEELRYYKKTWLI 169
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A3D0Q0G0_9BIFI (Oligoribonuclease n=27 Tax=root TaxID=1 RepID=A0A3D0Q0G0_9BIFI)

HSP 1 Score: 62.8 bits (151), Expect = 5.880e-10
Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   19 MLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFL 252
            +LAG ++  D+  L H  P L   + ++TI++S+L  + RRW PD+  + PP    HRAL D++E++  LR++ ++F+
Sbjct:  113 LLAGNTIGSDKKFLDHYMPELMKNLHYRTIDVSTLKELARRWYPDVYLNRPPKNGGHRALADIIESLDELRYYRKAFM 190
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A6I9WED9_9HYME (probable oligoribonuclease isoform X1 n=2 Tax=Pogonomyrmex barbatus TaxID=144034 RepID=A0A6I9WED9_9HYME)

HSP 1 Score: 62.0 bits (149), Expect = 7.110e-10
Identity = 27/74 (36.49%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   22 LAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWR 243
            LAG +VY DR  L    P +  Y+ ++ I++S++  +V+RW PD+ +S+P  +  HRAL D+ E++  L+++ R
Sbjct:  105 LAGNTVYMDRLFLYKYMPSVNNYLHYRIIDVSTVKELVKRWNPDVYKSIPRKRLRHRALDDIRESIDELKYYKR 178
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BLAST of jgi.p|Trimin1|179627 vs. uniprot
Match: A0A0N4V273_ENTVE (Exonuclease domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4V273_ENTVE)

HSP 1 Score: 62.0 bits (149), Expect = 8.170e-10
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   22 LAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLV 255
            LAG SV  DR  +    P+L  ++ ++T+++SS+  I +RW P+   S+P  +E H AL D+ E++  L+W+  +  V
Sbjct:  115 LAGNSVSVDRQFIKKYMPKLARHLHYRTVDVSSVKEIAKRWYPEKFASMPQKKEAHLALSDIKESIEELKWYRANIFV 192
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179627 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z6J6_9STRA1.210e-59100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEI1_9STRA2.090e-5393.10Ribonuclease H-like domain-containing protein n=2 ... [more]
A0A835Z4U2_9STRA1.310e-4073.26Ribonuclease H-like domain-containing protein n=1 ... [more]
A0A836CDV0_9STRA9.840e-2965.33Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835YX31_9STRA1.480e-2664.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPG5_ECTSI2.510e-1540.24EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI[more]
L0P9G8_PNEJ85.630e-1034.18Exonuclease domain-containing protein n=3 Tax=Pneu... [more]
A0A3D0Q0G0_9BIFI5.880e-1035.90Oligoribonuclease n=27 Tax=root TaxID=1 RepID=A0A3... [more]
A0A6I9WED9_9HYME7.110e-1036.49probable oligoribonuclease isoform X1 n=2 Tax=Pogo... [more]
A0A0N4V273_ENTVE8.170e-1034.62Exonuclease domain-containing protein n=1 Tax=Ente... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_197contigContig_197:50578..50841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179627|e_gw1.197.16.1
CAZyGH5,GH9
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019
KEGG rclassRC00408
KEGG ReactionR00959,R01057,R06200,R08639,R11307,R11308
KEGG ModuleM00549
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,ko03008,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130,map03008
KEGG koko:K01179,ko:K01835,ko:K13288
EC3.2.1.4,5.4.2.2
GOsGO:0000002,GO:0000175,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005759,GO:0005912,GO:0005924,GO:0005925,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008408,GO:0008946,GO:0009117,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019637,GO:0022613,GO:0030054,GO:0030055,GO:0031123,GO:0031125,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0055086,GO:0070013,GO:0070161,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360
Preferred nameREXO2
DescriptionRNA phosphodiester bond hydrolysis, exonucleolytic
COG categoryA
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1949@1|root,KOG3242@2759|Eukaryota
Evalue4.12e-16
Seed ortholog2880.D8LPG5
Hectar predicted targeting categoryother localisation
TranscriptId179949
TrackFilteredModels1
ProteinId179627
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179627gene_16423Tribonema minus UTEX_B_3156 geneContig_197 50578..50841 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16423_1exon_16423_1Tribonema minus UTEX_B_3156 exonContig_197 50578..50841 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16423CDS_16423Tribonema minus UTEX_B_3156 CDSContig_197 50578..50841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179627Trimin1|179627|e_gw1.197.16.1Tribonema minus UTEX_B_3156 polypeptideContig_197 50578..50841 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16423 ID=mRNA_16423|Name=jgi.p|Trimin1|179627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_197:50578..50841+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCATTATCGGATCATGTTAGCTGGATGCTCCGTGTACTTTGATAG
AGCAGTACTGCTGCACCGCTACCCTCGCCTCAGGCTCTATGTAGGCCACA
AAACGATAGAGCTATCCAGCCTTCTTGGAATCGTGAGGCGGTGGCGGCCA
GACTTGCTCCGTTCGCTGCCGCCTACTCAAGAATGCCACCGGGCTCTGAT
TGATGTCATGGAAGCTGTTTCGCTGCTGCGTTGGTTTTGGAGGTCATTCC
TCGTCGGCGTTTAG
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protein sequence of jgi.p|Trimin1|179627

>Trimin1|179627|e_gw1.197.16.1 ID=Trimin1|179627|e_gw1.197.16.1|Name=jgi.p|Trimin1|179627|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=88bp
MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRP
DLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV*
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mRNA from alignment at Contig_197:50578..50841+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16423 ID=mRNA_16423|Name=jgi.p|Trimin1|179627|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=264bp|location=Sequence derived from alignment at Contig_197:50578..50841+ (Tribonema minus UTEX_B_3156 )
ATGGAGCATTATCGGATCATGTTAGCTGGATGCTCCGTGTACTTTGATAG
AGCAGTACTGCTGCACCGCTACCCTCGCCTCAGGCTCTATGTAGGCCACA
AAACGATAGAGCTATCCAGCCTTCTTGGAATCGTGAGGCGGTGGCGGCCA
GACTTGCTCCGTTCGCTGCCGCCTACTCAAGAATGCCACCGGGCTCTGAT
TGATGTCATGGAAGCTGTTTCGCTGCTGCGTTGGTTTTGGAGGTCATTCC
TCGTCGGCGTTTAG
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Coding sequence (CDS) from alignment at Contig_197:50578..50841+

>mRNA_16423 ID=mRNA_16423|Name=jgi.p|Trimin1|179627|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=264bp|location=Sequence derived from alignment at Contig_197:50578..50841+ (Tribonema minus UTEX_B_3156 )
ATGGAGCATTATCGGATCATGTTAGCTGGATGCTCCGTGTACTTTGATAG
AGCAGTACTGCTGCACCGCTACCCTCGCCTCAGGCTCTATGTAGGCCACA
AAACGATAGAGCTATCCAGCCTTCTTGGAATCGTGAGGCGGTGGCGGCCA
GACTTGCTCCGTTCGCTGCCGCCTACTCAAGAATGCCACCGGGCTCTGAT
TGATGTCATGGAAGCTGTTTCGCTGCTGCGTTGGTTTTGGAGGTCATTCC
TCGTCGGCGTTTAG
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