mRNA_16420 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179621
Unique NamemRNA_16420
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835ZAI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI9_9STRA)

HSP 1 Score: 228 bits (582), Expect = 4.230e-76
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAAQ 321
            KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAAQ
Sbjct:    1 KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAAQ 107
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835YR08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR08_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.200e-68
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:    1 KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAA 318
            KVQNDTS PRTAFSCCVDP TLKVWVFGGFD DNTRLQAFQNYDLTSNEW VVQTVCSPDARAFHSMIYTQGSLYLMLGANGK+KFNDVWQYRIRSTPP LQMLAA
Sbjct:  105 KVQNDTSTPRTAFSCCVDPGTLKVWVFGGFDVDNTRLQAFQNYDLTSNEWEVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKRKFNDVWQYRIRSTPPMLQMLAA 210
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835Z6H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H5_9STRA)

HSP 1 Score: 213 bits (543), Expect = 9.490e-67
Identity = 98/105 (93.33%), Postives = 102/105 (97.14%), Query Frame = 1 
Query:    4 VQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAA 318
            V+ DTS+ RTA SCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGK+KFND+WQYRIRSTPPTLQMLAA
Sbjct:  220 VEGDTSVARTAVSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKRKFNDIWQYRIRSTPPTLQMLAA 324
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835ZA21_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA21_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.470e-58
Identity = 88/106 (83.02%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    1 KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAA 318
            +VQNDTSIPRTAFSCC+DPETLKVWVFGGFDADNTRLQAFQ YD+   +W  V +VCSP +RAFHSMIY+QGSL+LMLGANGK+KFNDVWQYRIRSTPP+LQMLAA
Sbjct:  219 QVQNDTSIPRTAFSCCMDPETLKVWVFGGFDADNTRLQAFQCYDMQLRKWENVASVCSPPSRAFHSMIYSQGSLFLMLGANGKRKFNDVWQYRIRSTPPSLQMLAA 324
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835Z2J9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J9_9STRA)

HSP 1 Score: 188 bits (477), Expect = 4.430e-56
Identity = 85/105 (80.95%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:    4 VQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAA 318
            V  DTS+ RTAFSCC DPETLKVWVFGGFDADNTRLQAFQ+YD+ S +W  V +VCSP +RAFHSMIY+QGSL+LMLGANGK+KFNDVWQYRIRSTPP+LQMLAA
Sbjct:  284 VDGDTSVARTAFSCCADPETLKVWVFGGFDADNTRLQAFQSYDMQSRKWENVASVCSPPSRAFHSMIYSQGSLFLMLGANGKRKFNDVWQYRIRSTPPSLQMLAA 388
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A836CDJ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDJ9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.800e-51
Identity = 79/85 (92.94%), Postives = 82/85 (96.47%), Query Frame = 1 
Query:    1 KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKK 255
            KVQNDTS PRTAFSCCVDPETLKVWVFGGFDADNTR+QAFQNYDLTSNEW VVQTVCSPDARAFHS+IY QGSLYLMLGANGK+K
Sbjct:  219 KVQNDTSTPRTAFSCCVDPETLKVWVFGGFDADNTRIQAFQNYDLTSNEWKVVQTVCSPDARAFHSVIYAQGSLYLMLGANGKRK 303
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835YN69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN69_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.880e-42
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAAQ 321
            + +ND S PR AFSCCVD ET K W+FGGF   N RLQAFQ +D+  N WN VQT+CSP  RAFHSM+  +GSL L+LG++G K F+DVW++ IRSTPP+LQMLAA+
Sbjct:  222 EAENDISTPRAAFSCCVDSETSKAWIFGGFSVHNNRLQAFQTFDIQRNVWNDVQTLCSPPPRAFHSMVLCKGSLLLLLGSDGDKIFDDVWKFCIRSTPPSLQMLAAK 328
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835Z4J3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.710e-32
Identity = 52/98 (53.06%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:   22 IPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLA 315
            +PR A +CCVDP T  +WVFGGFDA+  RL AFQ YD     W+ V T  +P ARAF+SM++ +G ++L++G+NG  +FNDVW+Y +R+TP +LQ LA
Sbjct:  163 VPRCACACCVDPTTATLWVFGGFDANTDRLAAFQTYDTRKCSWSSVVTPQNPPARAFNSMVFREGVIWLLIGSNGGARFNDVWRYAVRTTPSSLQTLA 260
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A836CD99_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD99_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.830e-30
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   19 SIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTV---CSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAAQ 321
            SI RTA +CC D E+ K WVFGGFD+D  RLQAFQ +D+ SN W  V  V    SP  RAFHSM+  +G+L++ LGA+G   ++DVW+Y IRSTPP LQ LA +
Sbjct:  225 SIGRTACTCCFDVESSKAWVFGGFDSDAKRLQAFQTFDVVSNAWAEVGGVKAETSPAPRAFHSMVLCRGALFMFLGADGNVCYDDVWRYSIRSTPPPLQHLATR 328
[Close]
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Match: A0A835ZFC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.480e-21
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:   28 RTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEWNVVQTV-----------------------CSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPTLQMLAAQ 321
            R A SC  DPET  ++++GGF  + +RLQ F  Y   + EW  ++T                         +P ARAFHS ++ +G+LY+  GANG  ++NDVW+YR+RS+PP L +LA +
Sbjct:  260 RVAHSCSFDPETCTIYLWGGFTGELSRLQDFYAYHAPTGEWTEIRTAPPXXXXXXXXXXXXXXXXXXXXXVAPYARAFHSAVFYKGALYVFSGANGDVRYNDVWRYRMRSSPPALGVLAGR 380
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179621 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A835ZAI9_9STRA4.230e-76100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YR08_9STRA1.200e-6894.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z6H5_9STRA9.490e-6793.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA21_9STRA1.470e-5883.02Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2J9_9STRA4.430e-5680.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDJ9_9STRA3.800e-5192.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YN69_9STRA2.880e-4262.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z4J3_9STRA6.710e-3253.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CD99_9STRA1.830e-3055.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFC9_9STRA8.480e-2138.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_197contigContig_197:28117..28440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179621|e_gw1.197.10.1
BRITEko00000,ko04131
KEGG koko:K20285
Descriptionnitrile biosynthetic process
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsKOG0379@1|root,KOG0379@2759|Eukaryota
Evalue2.93e-19
Seed ortholog2880.D7FP81
Hectar predicted targeting categoryother localisation
TranscriptId179943
TrackFilteredModels1
ProteinId179621
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179621gene_16420Tribonema minus UTEX_B_3156 geneContig_197 28117..28440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16420_1exon_16420_1Tribonema minus UTEX_B_3156 exonContig_197 28117..28440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16420CDS_16420Tribonema minus UTEX_B_3156 CDSContig_197 28117..28440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179621Trimin1|179621|e_gw1.197.10.1Tribonema minus UTEX_B_3156 polypeptideContig_197 28117..28440 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16420 ID=mRNA_16420|Name=jgi.p|Trimin1|179621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_197:28117..28440- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGTGCAAAACGACACTTCTATCCCAAGAACAGCCTTTAGCTGCTGCGT
GGACCCCGAGACATTGAAAGTGTGGGTGTTTGGCGGCTTTGATGCTGACA
ACACTCGCTTACAAGCCTTTCAAAACTATGACTTGACATCAAATGAGTGG
AACGTTGTGCAGACTGTATGCAGTCCAGACGCCCGTGCCTTTCATTCCAT
GATATATACTCAAGGTTCCTTGTACCTAATGCTCGGTGCAAACGGCAAGA
AAAAATTCAATGACGTGTGGCAATATCGCATCCGCAGCACTCCTCCCACG
TTGCAAATGCTGGCAGCTCAGTGA
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protein sequence of jgi.p|Trimin1|179621

>Trimin1|179621|e_gw1.197.10.1 ID=Trimin1|179621|e_gw1.197.10.1|Name=jgi.p|Trimin1|179621|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
KVQNDTSIPRTAFSCCVDPETLKVWVFGGFDADNTRLQAFQNYDLTSNEW
NVVQTVCSPDARAFHSMIYTQGSLYLMLGANGKKKFNDVWQYRIRSTPPT
LQMLAAQ*
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mRNA from alignment at Contig_197:28117..28440-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16420 ID=mRNA_16420|Name=jgi.p|Trimin1|179621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_197:28117..28440- (Tribonema minus UTEX_B_3156 )
AAGGTGCAAAACGACACTTCTATCCCAAGAACAGCCTTTAGCTGCTGCGT
GGACCCCGAGACATTGAAAGTGTGGGTGTTTGGCGGCTTTGATGCTGACA
ACACTCGCTTACAAGCCTTTCAAAACTATGACTTGACATCAAATGAGTGG
AACGTTGTGCAGACTGTATGCAGTCCAGACGCCCGTGCCTTTCATTCCAT
GATATATACTCAAGGTTCCTTGTACCTAATGCTCGGTGCAAACGGCAAGA
AAAAATTCAATGACGTGTGGCAATATCGCATCCGCAGCACTCCTCCCACG
TTGCAAATGCTGGCAGCTCAGTGA
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Coding sequence (CDS) from alignment at Contig_197:28117..28440-

>mRNA_16420 ID=mRNA_16420|Name=jgi.p|Trimin1|179621|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_197:28117..28440- (Tribonema minus UTEX_B_3156 )
AAGGTGCAAAACGACACTTCTATCCCAAGAACAGCCTTTAGCTGCTGCGT
GGACCCCGAGACATTGAAAGTGTGGGTGTTTGGCGGCTTTGATGCTGACA
ACACTCGCTTACAAGCCTTTCAAAACTATGACTTGACATCAAATGAGTGG
AACGTTGTGCAGACTGTATGCAGTCCAGACGCCCGTGCCTTTCATTCCAT
GATATATACTCAAGGTTCCTTGTACCTAATGCTCGGTGCAAACGGCAAGA
AAAAATTCAATGACGTGTGGCAATATCGCATCCGCAGCACTCCTCCCACG
TTGCAAATGCTGGCAGCTCAGTGA
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