Trimin1|353919|estExt_Genemark1.C_Ctg_1960015 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353919
Unique NameTrimin1|353919|estExt_Genemark1.C_Ctg_1960015
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length171
Homology
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A836CHX6_9STRA (RF-1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX6_9STRA)

HSP 1 Score: 246 bits (628), Expect = 4.290e-81
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0
Query:    1 MDSSVPSRNKPPEDPDDIAVDARQKQQGRKSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTHAHPAEGKPG 170
            MDSSVPSRNKPPEDPDDIAVDARQKQQGRKSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTHAHPAEGKPG
Sbjct:    1 MDSSVPSRNKPPEDPDDIAVDARQKQQGRKSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTHAHPAEGKPG 170          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A7S2S280_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S280_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.460e-27
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 0
Query:   30 KSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQ 119
            +S    RL L+E D+ E+FVKG+GPGGQKINKVR+CVQL H PTG+ V  QD R L +NRAIARK LAEKV+  + G++S++G++V++ Q
Sbjct:   67 RSHAVSRLTLSENDLEEAFVKGTGPGGQKINKVRNCVQLRHTPTGLTVAVQDGRSLTANRAIARKRLAEKVDLEMNGRESKLGKKVAKKQ 156          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A6H5K1A9_9PHAE (RF_PROK_I domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1A9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.070e-26
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 0
Query:   28 GRKSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
            GR        +L + DI E F  GSGPGGQKINKVR+CVQLTHLP+G+ V CQD+R+L +NR IARK L EKVEF L G DS++GRR++ ++ +
Sbjct:   44 GRAGGTRPAFELLDEDIEERF--GSGPGGQKINKVRNCVQLTHLPSGVSVSCQDSRELHANRHIARKRLKEKVEFQLMGADSKVGRRINNIRNK 135          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: W2QR85_PHYPN (RF_PROK_I domain-containing protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QR85_PHYPN)

HSP 1 Score: 102 bits (254), Expect = 3.980e-24
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 0
Query:   30 KSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
            +S   + ++LNE+D+ ESFVKGSG GGQKINKVR+CV LTH+PTG+QVQCQ  R L  NR  ARK+L +K++ H+ G+ S+  +++ +++++
Sbjct:   41 RSKQRIDVELNESDLTESFVKGSGKGGQKINKVRNCVLLTHVPTGLQVQCQKTRSLDGNRRAARKLLLQKLDDHVNGELSKRSQKIDKLRRK 132          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: H3GR69_PHYRM (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GR69_PHYRM)

HSP 1 Score: 103 bits (256), Expect = 6.850e-24
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 0
Query:   30 KSAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
            K+     + L+EAD++ESFVKGSG GGQKINKVR+CV LTHLPTG+QVQCQ  R L  NR  ARK+L +K++ H+ G  S+  +++ R++++
Sbjct:  102 KTKERAEVLLDEADLKESFVKGSGKGGQKINKVRNCVLLTHLPTGLQVQCQKTRSLDGNRRAARKLLLQKLDDHVNGSLSKRSQKIERLRRK 193          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A421F162_9STRA (RF_PROK_I domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F162_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.550e-23
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 0
Query:   35 VRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
              + L E+D+RESFVKGSG GGQKINKVR+CV LTHLPTG+QVQCQ  R L  NR  ARK+L +K++  + G  S+  +++ R++++
Sbjct:   15 TEVNLKESDLRESFVKGSGKGGQKINKVRNCVLLTHLPTGLQVQCQKTRSLDGNRRAARKLLLQKLDDQVNGSLSKHSQKIDRLRRK 101          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A833T0D8_PHYIN (RF-1 domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T0D8_PHYIN)

HSP 1 Score: 100 bits (248), Expect = 2.630e-23
Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 0
Query:   35 VRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
            + ++LNE+D+ ESFVKGSG GGQKINKVR+CV LTH+PTG+QVQCQ  R L  NR  ARK+L +K++ H+ G  S+  +++ +++++
Sbjct:   42 IDVQLNESDVTESFVKGSGKGGQKINKVRNCVLLTHVPTGLQVQCQKTRSLDGNRRAARKLLLQKLDDHVNGVLSKRSQKIVKLRRK 128          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A225V7Z0_9STRA (RF_PROK_I domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V7Z0_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.980e-23
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = 0
Query:   35 VRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
              ++L E+D+ ESFVKGSG GGQKINKVR+CV LTHLPTG+QVQCQ  R L  NR  ARK+L +K++ H+ G  S+   ++ +++++
Sbjct:   41 TEVQLKESDLTESFVKGSGKGGQKINKVRNCVLLTHLPTGLQVQCQKTRSLDGNRRAARKLLLQKLDDHVNGSLSKRNEKIDKLRRK 127          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A329RSP3_9STRA (RF_PROK_I domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RSP3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.200e-23
Identity = 47/91 (51.65%), Postives = 68/91 (74.73%), Query Frame = 0
Query:   31 SAPTVRLKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
            S   + ++LNE+D+ ESFVKGSG GGQKINKVR+CV LTH+PTG+QVQCQ  R L  NR  ARK+L  K++ H+ G  S+  +++ +++++
Sbjct:   38 SKQRIDVQLNESDLTESFVKGSGKGGQKINKVRNCVLLTHVPTGLQVQCQKTRSLDGNRRAARKLLLLKLDDHVNGVLSKRSQKIDKLRRK 128          
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Match: A0A484ED61_BRELC (RF_PROK_I domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484ED61_BRELC)

HSP 1 Score: 98.6 bits (244), Expect = 1.520e-22
Identity = 45/85 (52.94%), Postives = 66/85 (77.65%), Query Frame = 0
Query:   37 LKLNEADIRESFVKGSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKVEFHLRGKDSRIGRRVSRVQKQ 121
            ++L E+++ ESFVKGSG GGQKINKVR+CV LTH+PTG+QVQCQ  R L  NR  ARK+L +K++ H+ G+ S+   ++ R++++
Sbjct:   44 VELKESELSESFVKGSGKGGQKINKVRNCVLLTHVPTGLQVQCQKTRSLDGNRRAARKLLQQKLDDHVNGESSKRSLKIDRLRRK 128          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353919 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHX6_9STRA4.290e-81100.00RF-1 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2S280_9STRA6.460e-2757.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5K1A9_9PHAE1.070e-2657.45RF_PROK_I domain-containing protein n=2 Tax=Ectoca... [more]
W2QR85_PHYPN3.980e-2451.09RF_PROK_I domain-containing protein n=9 Tax=Phytop... [more]
H3GR69_PHYRM6.850e-2453.26RF_PROK_I domain-containing protein n=1 Tax=Phytop... [more]
A0A421F162_9STRA2.550e-2354.02RF_PROK_I domain-containing protein n=4 Tax=Phytop... [more]
A0A833T0D8_PHYIN2.630e-2352.87RF-1 domain n=1 Tax=Phytophthora infestans TaxID=4... [more]
A0A225V7Z0_9STRA4.980e-2352.87RF_PROK_I domain-containing protein n=1 Tax=Phytop... [more]
A0A329RSP3_9STRA7.200e-2351.65RF_PROK_I domain-containing protein n=2 Tax=Phytop... [more]
A0A484ED61_BRELC1.520e-2252.94RF_PROK_I domain-containing protein n=1 Tax=Bremia... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.20coord: 16..111
e-value: 4.1E-29
score: 102.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
NoneNo IPR availablePANTHERPTHR46203PROBABLE PEPTIDE CHAIN RELEASE FACTOR C12ORF65coord: 28..148
IPR000352Peptide chain release factor class IPFAMPF00472RF-1coord: 35..131
e-value: 8.4E-24
score: 83.7
IPR045853Peptide chain release factor class I superfamilySUPERFAMILY75620Release factorcoord: 34..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:124897..125864 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353919mRNA_16248Tribonema minus UTEX_B_3156 mRNAContig_196 124522..125864 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353919|estExt_Genemark1.C_Ctg_1960015 ID=Trimin1|353919|estExt_Genemark1.C_Ctg_1960015|Name=jgi.p|Trimin1|353919|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=171bp
MDSSVPSRNKPPEDPDDIAVDARQKQQGRKSAPTVRLKLNEADIRESFVK
GSGPGGQKINKVRSCVQLTHLPTGIQVQCQDARDLISNRAIARKMLAEKV
EFHLRGKDSRIGRRVSRVQKQKAKSRSRSRKAQQLRDGVGEESHDEEEEE
KEQEQEHEVTHAHPAEGKPG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I
IPR045853Pep_chain_release_fac_I_sf