mRNA_16255 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A835ZAL2_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL2_9STRA) HSP 1 Score: 181 bits (460), Expect = 6.950e-58 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 Query: 1 RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV 285 RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV Sbjct: 1 RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAEV 95
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 1.600e-9 Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 Query: 10 LGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAE 282 L A + +++ AA FA PVD+A Y V +PMDL LILRRLE +YY AL DC+L+ NC K+N S I + + ++ L + Sbjct: 1523 LAAKVREVAESPDAALFAEPVDVA---DYHTIVPVPMDLGLILRRLEKDYYCSVEALEFDCNLVYDNCTKYNEPGSDIVKLAFTVSDQLVQ 1610
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI) HSP 1 Score: 62.8 bits (151), Expect = 2.170e-9 Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 10 LGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASALAE 282 L A + +++ AA FA PVD V Y V +PMDL LILRRLE +YY AL DC+L+ NC K+N S I + + ++ L + Sbjct: 1564 LAAKVREVAESPDAALFAEPVD---VVDYHTIVPVPMDLGLILRRLEKDYYCSVEALEFDCNLVYDNCTKYNEPGSDIVKLAFTVSDQLVQ 1651
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6F9D7L9_9ASCI (Bromodomain and WD repeat-containing protein 3 n=1 Tax=Phallusia mammillata TaxID=59560 RepID=A0A6F9D7L9_9ASCI) HSP 1 Score: 58.2 bits (139), Expect = 9.130e-8 Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1 Query: 7 RLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276 R+ A+E L + F+ PVD Y V P+DL+LILRRL+ +YR +L D L+ N L FN DS I + +Q L + L Sbjct: 1216 RIACAIETLLNFKMFFQFSGPVDFKIYPTYVLAVPYPIDLSLILRRLQSRFYRRKASLVWDIELLSKNALAFNKSDSKIVKTAQFLENRL 1305
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6G0LMW6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LMW6_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.820e-6 Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1 Query: 46 FAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276 F+ F PVD Y +VA P+DL I RRL YYR A D L+ +NC +N+ S I++ S+ L SA+ Sbjct: 1169 FSRDFMCPVDEETFMDYPYSVANPIDLTKIQRRLRLGYYRQVEAFLADVKLLRINCETYNIPSSPISQNSRNLYSAV 1245
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: H3GMX0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMX0_PHYRM) HSP 1 Score: 53.5 bits (127), Expect = 3.600e-6 Identity = 28/70 (40.00%), Postives = 38/70 (54.29%), Query Frame = 1 Query: 67 PVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276 PVD Y ++A P+DL I RRL YYR A D LI +NC +N+ S I++ S+ L SA+ Sbjct: 3 PVDEETFIDYPISIANPIDLTKIQRRLRLGYYRQVEAFLSDVKLISINCETYNIPSSPISQNSRNLLSAI 72
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6G0XRZ7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRZ7_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 3.860e-6 Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 Query: 94 YGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQ 258 Y T+A PMDL+LI RR+E YYR AL D L++ NC +N+E S IA+ ++ Sbjct: 1445 YHITIANPMDLSLICRRVESGYYRQVDALLADVKLMVRNCETYNVESSLIAQNAR 1499
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: A0A6A3MDY0_9STRA (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MDY0_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 5.300e-6 Identity = 30/77 (38.96%), Postives = 41/77 (53.25%), Query Frame = 1 Query: 46 FAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276 F+ F PVD Y +VA P+DL I RRL YYR A D L+ +NC +N+ S I++ S+ L SA+ Sbjct: 1802 FSRDFMYPVDEETFMDYPYSVANPIDLTKIQRRLRLGYYRQVEAFLADVKLLRINCETYNIPSSPISQNSRNLYSAV 1878
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Match: G4YIG9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIG9_PHYSP) HSP 1 Score: 52.0 bits (123), Expect = 1.350e-5 Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 1 Query: 46 FAASFAAPVDLAAVYGYGATVALPMDLALILRRLEGNYYRGARALAHDCHLIIVNCLKFNLEDSGIARQSQRLASAL 276 F+ F PVD Y +VA P+DL I RRL YYR A D L+ +NC +N+ S I++ S+ L +A+ Sbjct: 1432 FSRDFMYPVDEETFMDYPYSVANPIDLTKIQRRLRLGYYRQVEAFLADVKLLRINCETYNIPSSPISQNSRNLYAAV 1508 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132884 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16255 ID=mRNA_16255|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_196:167816..168100- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGGCGCCGCTTAGGCGCGGCGCTGGAGGCACTCTCCAAGGAGCGCTTCGCback to top protein sequence of jgi.p|Trimin1|132884 >Trimin1|132884|gw1.196.19.1 ID=Trimin1|132884|gw1.196.19.1|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp RRRLGAALEALSKERFAASFAAPVDLAAVYGYGATVALPMDLALILRRLEback to top mRNA from alignment at Contig_196:167816..168100- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16255 ID=mRNA_16255|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=285bp|location=Sequence derived from alignment at Contig_196:167816..168100- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_196:167816..168100- >mRNA_16255 ID=mRNA_16255|Name=jgi.p|Trimin1|132884|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_196:167816..168100- (Tribonema minus UTEX_B_3156 )back to top |