mRNA_16266 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|36695
Unique NamemRNA_16266
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|36695 vs. uniprot
Match: A0A835Z443_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z443_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.510e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 3 
Query:   36 MLIDTPLFFLWLLADSTISLVSAVNHKILAVRLCPCATFLALRRLNTSRQSTVLVMIWSHVIAMWSAAAQCRPFMKPSVRPSTCMHVGPSPWADR 320
            MLIDTPLFFLWLLADSTISLVSAVNHKILAVRLCPCATFLALRRLNTSRQSTVLVMIWSHVIAMWSAAAQCRPFMKPSVRPSTCMHVGPSPWADR
Sbjct:    1 MLIDTPLFFLWLLADSTISLVSAVNHKILAVRLCPCATFLALRRLNTSRQSTVLVMIWSHVIAMWSAAAQCRPFMKPSVRPSTCMHVGPSPWADR 95
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|36695 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z443_9STRA3.510e-62100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_196contigContig_196:226939..227324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|36695|CE36694_73
Hectar predicted targeting categorysignal peptide
TranscriptId37017
TrackFilteredModels1
ProteinId36695
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|36695gene_16266Tribonema minus UTEX_B_3156 geneContig_196 226939..227324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16266_1exon_16266_1Tribonema minus UTEX_B_3156 exonContig_196 226939..227324 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_16266UTR3_16266Tribonema minus UTEX_B_3156 three_prime_UTRContig_196 226939..227001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16266CDS_16266Tribonema minus UTEX_B_3156 CDSContig_196 227002..227289 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_16266UTR5_16266Tribonema minus UTEX_B_3156 five_prime_UTRContig_196 227290..227324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|36695Trimin1|36695|CE36694_73Tribonema minus UTEX_B_3156 polypeptideContig_196 227002..227289 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16266 ID=mRNA_16266|Name=jgi.p|Trimin1|36695|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=386bp|location=Sequence derived from alignment at Contig_196:226939..227324- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGTTGCAACACTTGCATTCATAAAAAGTGATTTTGATGCTCATAGACACC
CCTCTATTCTTTCTGTGGTTGCTGGCTGACTCTACGATATCCTTGGTAAG
CGCAGTAAATCACAAAATCTTGGCAGTACGCCTGTGCCCATGTGCCACTT
TCCTTGCACTCCGCCGCCTCAATACCAGCCGGCAGTCAACAGTTCTGGTG
ATGATATGGTCGCATGTGATTGCAATGTGGTCAGCAGCGGCACAGTGCAG
GCCGTTCATGAAACCCTCAGTCCGCCCTAGCACGTGCATGCATGTAGGGC
CTTCCCCCTGGGCTGACAGGTAACCCCCCCGGCCCTAATTTGATGCAACT
GGTGGCCACAGCCGTGTTTTTGGTGTTGTGGCCCAA
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protein sequence of jgi.p|Trimin1|36695

>Trimin1|36695|CE36694_73 ID=Trimin1|36695|CE36694_73|Name=jgi.p|Trimin1|36695|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp
MLIDTPLFFLWLLADSTISLVSAVNHKILAVRLCPCATFLALRRLNTSRQ
STVLVMIWSHVIAMWSAAAQCRPFMKPSVRPSTCMHVGPSPWADR*
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mRNA from alignment at Contig_196:226939..227324-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16266 ID=mRNA_16266|Name=jgi.p|Trimin1|36695|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=386bp|location=Sequence derived from alignment at Contig_196:226939..227324- (Tribonema minus UTEX_B_3156 )
GGTTGCAACACTTGCATTCATAAAAAGTGATTTTGATGCTCATAGACACC
CCTCTATTCTTTCTGTGGTTGCTGGCTGACTCTACGATATCCTTGGTAAG
CGCAGTAAATCACAAAATCTTGGCAGTACGCCTGTGCCCATGTGCCACTT
TCCTTGCACTCCGCCGCCTCAATACCAGCCGGCAGTCAACAGTTCTGGTG
ATGATATGGTCGCATGTGATTGCAATGTGGTCAGCAGCGGCACAGTGCAG
GCCGTTCATGAAACCCTCAGTCCGCCCTAGCACGTGCATGCATGTAGGGC
CTTCCCCCTGGGCTGACAGGTAACCCCCCCGGCCCTAATTTGATGCAACT
GGTGGCCACAGCCGTGTTTTTGGTGTTGTGGCCCAA
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Coding sequence (CDS) from alignment at Contig_196:226939..227324-

>mRNA_16266 ID=mRNA_16266|Name=jgi.p|Trimin1|36695|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_196:226939..227324- (Tribonema minus UTEX_B_3156 )
ATGCTCATAGACACCCCTCTATTCTTTCTGTGGTTGCTGGCTGACTCTAC
GATATCCTTGGTAAGCGCAGTAAATCACAAAATCTTGGCAGTACGCCTGT
GCCCATGTGCCACTTTCCTTGCACTCCGCCGCCTCAATACCAGCCGGCAG
TCAACAGTTCTGGTGATGATATGGTCGCATGTGATTGCAATGTGGTCAGC
AGCGGCACAGTGCAGGCCGTTCATGAAACCCTCAGTCCGCCCTAGCACGT
GCATGCATGTAGGGCCTTCCCCCTGGGCTGACAGGTAA
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