mRNA_16848 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|136939
Unique NamemRNA_16848
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A835Z4L7_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4L7_9STRA)

HSP 1 Score: 432 bits (1112), Expect = 1.540e-153
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 1
Query:    1 TLKRRKLQGVILVSDSSPQHQTWRQAFARLLEDEKVAVVLLAEWEPFLHAYPFICHPEQIADAPYYPSEIITPAKGHGGLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            TLKRRKLQGVILVSDSSPQHQTWRQAFARLLEDEKVAVVLLAEWEPFLHAYPFICHPEQIADAPYYPSEIITPAKGHGGLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE
Sbjct:    1 TLKRRKLQGVILVSDSSPQHQTWRQAFARLLEDEKVAVVLLAEWEPFLHAYPFICHPEQIADAPYYPSEIITPAKGHGGLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 211          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: K1RRP4_CRAGI (Dual specificity protein phosphatase 19 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1RRP4_CRAGI)

HSP 1 Score: 100 bits (249), Expect = 9.930e-23
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 1
Query:  235 GLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            GL L    V    D+L+   +  I++ +TL  ++  ++     YM ID+ D P  ++AQ+F  A  FI EG++ G  VLVHC AG SRS++IV+A++M ++ WP+ + Y YV   R+++  N GF+ QL  +E
Sbjct:   68 GLILGSQDVAAEFDLLKKYKVTHILNVATL--VKNSFS-ENFTYMNIDLLDIPQTDIAQHFETAFQFIDEGMDKGGCVLVHCNAGISRSSTIVIAYLMMKKHWPLNKAYQYVKEKRSKIRPNAGFQEQLQTFE 197          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A7S3Z7A2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z7A2_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 4.000e-21
Identity = 68/216 (31.48%), Postives = 113/216 (52.31%), Query Frame = 1
Query:    1 TLKRRKLQG---VILVSDSSPQHQTWRQAFARLLEDEKVAVVLLAEWEPFLHAYPFICHPEQIADAPYYPSEIITPAKGHGGLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFI--SEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            TLK R  +G   VI+ +D +          A++L D     +L   ++ FL  YP+      +   P++P+ ++        LYL       N D L  L I  I++ S+  D++  +     +Y  I++ D+PD  + +YF  A AF+  +EG E+ +  LVHC  G SRS+++ +A++MQ+E W ++  YD+V  NR ++  N GF RQLA +E
Sbjct:   99 TLKSRARRGKRTVIVSTDGNTSPTESAGCMAKILADSSDLYILEGGFDSFLRKYPYATG---VVKLPWFPTVLL-----EDFLYLGSEDQAKNLDQLNALGITHILNVSS--DVKNYFP-EKFKYHKINLPDEPDAKLDEYFTDAFAFLRQAEG-ESSKKCLVHCYQGVSRSSTVTLAYMMQKEQWTLKDSYDFVKANRPEINPNPGFWRQLARFE 302          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A7J7CSG5_TRIWF (Dual specificity protein phosphatase 1 isoform 2 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CSG5_TRIWF)

HSP 1 Score: 95.5 bits (236), Expect = 4.350e-21
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  211 ITPAKGHGGLYLSGYQVPTNPDVLRHLNIKRIID-ASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            + P K   GL+L       N   L+ LN+  I+  AS+L             Y  I + D PD ++ QYF    +FI E  E G GVLVHC  G SRSA+IV+A++M++ G  + +  D+V   R QV  N+GF +QL D+E
Sbjct:   29 VIPCKIEEGLFLGSLGAANNKSELKRLNVTHILTVASSLPPAHPD----DFVYKVIPVMDRPDTDLRQYFDECFSFIDEAKEKGGGVLVHCFVGRSRSATIVIAYLMKKHGMSLSQAQDHVKSRRPQVCPNVGFMKQLQDFE 166          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A077ZYC4_STYLE (Leucine rich repeat and phosphatase domain containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZYC4_STYLE)

HSP 1 Score: 93.6 bits (231), Expect = 1.910e-20
Identity = 46/133 (34.59%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  235 GLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            GLY+S      N ++L+   I  I+   T+  I  ++     +YM ++I+D  D ++ ++F A   FI+  +E G  VLVHC AG SRS ++V A++M +  W  ++ ++Y    RN++Y NLGF++QL D++
Sbjct:   17 GLYMSDITTAENTEILKKYQITHIV---TVTKISPKFP-DRFQYMQVEIDDQSDQDIKKHFKATNKFINNAIENGGVVLVHCAAGISRSGAVVCAYLMYKNRWSFDQAWEYGQTKRNKMYPNLGFQKQLRDFQ 145          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A7D5B7V8_OSTFU (Dual-specificity protein phosphatase n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=A0A7D5B7V8_OSTFU)

HSP 1 Score: 94.4 bits (233), Expect = 4.010e-20
Identity = 53/133 (39.85%), Postives = 75/133 (56.39%), Query Frame = 1
Query:  235 GLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            GLYLS  +   +  VLRHLNI  ++        +  +A + I  + I  +D P  N+  YFP A AFI EGL+ G  VLVHC  G SRSA+IV+A++M++     E+ Y YV   R  +  N GF  QL +++
Sbjct:   59 GLYLSNARAAADQSVLRHLNITHVLTVEAHRLPKSTFANTNISTLFIRADDTPSTNLMSYFPMANAFIDEGLQKGN-VLVHCHFGVSRSATIVIAYLMEKYSLTFEQAYFYVRQRRRFINPNPGFVSQLKEYQ 190          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A8J9YI34_9NEOP ((lesser marbled fritillary) hypothetical protein (Fragment) n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9YI34_9NEOP)

HSP 1 Score: 93.2 bits (230), Expect = 8.960e-20
Identity = 54/132 (40.91%), Postives = 75/132 (56.82%), Query Frame = 1
Query:  235 GLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADW 630
            GLYLS  +   + +VLRHLNI  ++   T    +  +  S I  + I   D P  N+  YFP A AFI EGL+ G  VLVHC  G SRSA++V+AFIM++     E+ Y++V   R+ +  N GF  QL  +
Sbjct:   49 GLYLSNAKAACDRNVLRHLNITHVLTIETRRLPKSTFIDSNISTLYIRANDTPQTNLLPYFPMANAFIEEGLQKGN-VLVHCHFGVSRSATLVIAFIMEKYKLTFEQAYNFVRQRRSFINPNPGFVNQLKQY 179          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A6A6JY15_9PLEO (Phosphatases II (Fragment) n=1 Tax=Westerdykella ornata TaxID=318751 RepID=A0A6A6JY15_9PLEO)

HSP 1 Score: 90.9 bits (224), Expect = 2.230e-19
Identity = 47/136 (34.56%), Postives = 76/136 (55.88%), Query Frame = 1
Query:  226 GHGGLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            G G LY+ G       D++    I  ++ A   D + +Q  +S +++  + ++DDP+ ++ QYF A   +I EG+ +G GV VHC  G SRSA+ V+A++M + G   ERG D +   R     N+GF+ QL  W+
Sbjct:    9 GAGKLYIGGLYGLYQTDLISAAGITHVLSAIDYDPLLQQH-FSHLKHFHVRVDDDPNQDLLQYFDAGSRYIDEGISSGGGVFVHCAMGKSRSATFVVAYLMWKCGVTWERGLDMLCKGRPVCDPNVGFKEQLGVWQ 143          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A821V9V2_9NEOP (Hypothetical protein n=3 Tax=Pieris TaxID=7115 RepID=A0A821V9V2_9NEOP)

HSP 1 Score: 92.0 bits (227), Expect = 2.410e-19
Identity = 52/133 (39.10%), Postives = 74/133 (55.64%), Query Frame = 1
Query:  235 GLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            GLYLS  +   + DVLRHL I  ++        +  +  S I  + I   D P  N+  YFP A AFI EG++ G  VLVHC  G SRSA++V+A+IMQ+ G   E+ +++V   R  +  N GF  QL  ++
Sbjct:   48 GLYLSNARAAADRDVLRHLKITHVLTVEARRLPKSAFVDSDISTLYIRANDTPQTNLLPYFPMANAFIEEGIQKGN-VLVHCHFGVSRSATLVIAYIMQKYGLRYEQAFNFVRQRRRFINPNPGFVNQLKQYQ 179          
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Match: A0A8J1UHK6_OWEFU (Ofus.G141101 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UHK6_OWEFU)

HSP 1 Score: 91.7 bits (226), Expect = 2.460e-19
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  235 GLYLSGYQVPTNPDVLRHLNIKRIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGLEAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVNLGFRRQLADWE 633
            GLYLS   V  + D+L   +I  I++ +++    E W     +Y+ I+I D P+ +++++FP    FI E L +   VLVHC AG SRSA+IV+A+IM+ E   ++  +  V G R  +  N GF+ QL  +E
Sbjct:   68 GLYLSSQDVAADVDILEQHDITHILNVASMI---ENWFPDDFKYLKIEILDIPESDISKHFPECFKFIDEALGSKGRVLVHCNAGVSRSATIVIAYIMRTERMTLQEAHSKVAGVRPCIRPNAGFQHQLKTYE 197          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136939 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4L7_9STRA1.540e-153100.00Protein-tyrosine phosphatase-like protein (Fragmen... [more]
K1RRP4_CRAGI9.930e-2337.59Dual specificity protein phosphatase 19 n=1 Tax=Cr... [more]
A0A7S3Z7A2_9EUKA4.000e-2131.48Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7J7CSG5_TRIWF4.350e-2138.03Dual specificity protein phosphatase 1 isoform 2 n... [more]
A0A077ZYC4_STYLE1.910e-2034.59Leucine rich repeat and phosphatase domain contain... [more]
A0A7D5B7V8_OSTFU4.010e-2039.85Dual-specificity protein phosphatase n=1 Tax=Ostri... [more]
A0A8J9YI34_9NEOP8.960e-2040.91(lesser marbled fritillary) hypothetical protein (... [more]
A0A6A6JY15_9PLEO2.230e-1934.56Phosphatases II (Fragment) n=1 Tax=Westerdykella o... [more]
A0A821V9V2_9NEOP2.410e-1939.10Hypothetical protein n=3 Tax=Pieris TaxID=7115 Rep... [more]
A0A8J1UHK6_OWEFU2.460e-1936.84Ofus.G141101 protein n=1 Tax=Owenia fusiformis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_193contigContig_193:77015..77647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|136939|gw1.193.35.1
BRITEko00000
KEGG koko:K18047
DescriptionDual specificity phosphatase, catalytic domain
COG categoryV
Max annot lvl33208|Metazoa
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota,3A31H@33154|Opisthokonta,3BR9G@33208|Metazoa,3D3QD@33213|Bilateria,485QQ@7711|Chordata
Evalue1.16e-21
Seed ortholog7739.XP_002596492.1
Hectar predicted targeting categoryother localisation
TranscriptId137261
TrackFilteredModels1
ProteinId136939
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136939gene_16848Tribonema minus UTEX_B_3156 geneContig_193 77015..77647 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_16848_1exon_16848_1Tribonema minus UTEX_B_3156 exonContig_193 77015..77647 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_16848CDS_16848Tribonema minus UTEX_B_3156 CDSContig_193 77015..77647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|136939Trimin1|136939|gw1.193.35.1Tribonema minus UTEX_B_3156 polypeptideContig_193 77015..77647 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_16848 ID=mRNA_16848|Name=jgi.p|Trimin1|136939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_193:77015..77647+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACACTCAAACGGCGCAAACTACAAGGCGTAATCCTGGTCTCCGACAGCAG
CCCTCAACATCAGACATGGCGGCAAGCTTTTGCGCGCTTACTAGAGGACG
AAAAAGTTGCGGTGGTACTGCTTGCTGAGTGGGAGCCCTTTCTTCATGCT
TACCCCTTCATCTGCCACCCAGAGCAAATCGCAGACGCCCCCTACTATCC
TAGCGAGATCATCACACCCGCAAAGGGGCATGGGGGTCTGTACCTGTCAG
GATATCAGGTTCCCACCAATCCGGACGTGCTTAGACACTTGAACATCAAG
CGCATCATAGACGCGTCCACGCTAGATGACATCAGAGAGCAGTGGGCATA
CAGCGGCATTCGCTACATGACCATTGACATCGAAGATGACCCAGATGACA
ACGTTGCTCAGTACTTTCCCGCAGCCATTGCATTCATCAGCGAGGGCCTA
GAGGCAGGGGAGGGGGTGTTGGTGCACTGCATGGCTGGTGCTAGTCGGTC
CGCTAGCATCGTCATGGCGTTCATCATGCAGCGGGAAGGGTGGCCCATAG
AGCGCGGTTACGACTATGTTTACGGCAACAGGAACCAGGTGTATGTGAAT
CTGGGGTTCAGGAGGCAGCTGGCGGATTGGGAA
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protein sequence of jgi.p|Trimin1|136939

>Trimin1|136939|gw1.193.35.1 ID=Trimin1|136939|gw1.193.35.1|Name=jgi.p|Trimin1|136939|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
TLKRRKLQGVILVSDSSPQHQTWRQAFARLLEDEKVAVVLLAEWEPFLHA
YPFICHPEQIADAPYYPSEIITPAKGHGGLYLSGYQVPTNPDVLRHLNIK
RIIDASTLDDIREQWAYSGIRYMTIDIEDDPDDNVAQYFPAAIAFISEGL
EAGEGVLVHCMAGASRSASIVMAFIMQREGWPIERGYDYVYGNRNQVYVN
LGFRRQLADWE
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mRNA from alignment at Contig_193:77015..77647+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16848 ID=mRNA_16848|Name=jgi.p|Trimin1|136939|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_193:77015..77647+ (Tribonema minus UTEX_B_3156 )
ACACTCAAACGGCGCAAACTACAAGGCGTAATCCTGGTCTCCGACAGCAG CCCTCAACATCAGACATGGCGGCAAGCTTTTGCGCGCTTACTAGAGGACG AAAAAGTTGCGGTGGTACTGCTTGCTGAGTGGGAGCCCTTTCTTCATGCT TACCCCTTCATCTGCCACCCAGAGCAAATCGCAGACGCCCCCTACTATCC TAGCGAGATCATCACACCCGCAAAGGGGCATGGGGGTCTGTACCTGTCAG GATATCAGGTTCCCACCAATCCGGACGTGCTTAGACACTTGAACATCAAG CGCATCATAGACGCGTCCACGCTAGATGACATCAGAGAGCAGTGGGCATA CAGCGGCATTCGCTACATGACCATTGACATCGAAGATGACCCAGATGACA ACGTTGCTCAGTACTTTCCCGCAGCCATTGCATTCATCAGCGAGGGCCTA GAGGCAGGGGAGGGGGTGTTGGTGCACTGCATGGCTGGTGCTAGTCGGTC CGCTAGCATCGTCATGGCGTTCATCATGCAGCGGGAAGGGTGGCCCATAG AGCGCGGTTACGACTATGTTTACGGCAACAGGAACCAGGTGTATGTGAAT CTGGGGTTCAGGAGGCAGCTGGCGGATTGGGAA
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Coding sequence (CDS) from alignment at Contig_193:77015..77647+

>mRNA_16848 ID=mRNA_16848|Name=jgi.p|Trimin1|136939|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_193:77015..77647+ (Tribonema minus UTEX_B_3156 )
ACACTCAAACGGCGCAAACTACAAGGCGTAATCCTGGTCTCCGACAGCAG
CCCTCAACATCAGACATGGCGGCAAGCTTTTGCGCGCTTACTAGAGGACG
AAAAAGTTGCGGTGGTACTGCTTGCTGAGTGGGAGCCCTTTCTTCATGCT
TACCCCTTCATCTGCCACCCAGAGCAAATCGCAGACGCCCCCTACTATCC
TAGCGAGATCATCACACCCGCAAAGGGGCATGGGGGTCTGTACCTGTCAG
GATATCAGGTTCCCACCAATCCGGACGTGCTTAGACACTTGAACATCAAG
CGCATCATAGACGCGTCCACGCTAGATGACATCAGAGAGCAGTGGGCATA
CAGCGGCATTCGCTACATGACCATTGACATCGAAGATGACCCAGATGACA
ACGTTGCTCAGTACTTTCCCGCAGCCATTGCATTCATCAGCGAGGGCCTA
GAGGCAGGGGAGGGGGTGTTGGTGCACTGCATGGCTGGTGCTAGTCGGTC
CGCTAGCATCGTCATGGCGTTCATCATGCAGCGGGAAGGGTGGCCCATAG
AGCGCGGTTACGACTATGTTTACGGCAACAGGAACCAGGTGTATGTGAAT
CTGGGGTTCAGGAGGCAGCTGGCGGATTGGGAA
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