mRNA_17240 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|353877
Unique Name	mRNA_17240
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|353877 vs. uniprot
Match: A0A835ZAS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS7_9STRA)

HSP 1 Score: 311 bits (796), Expect = 9.430e-105
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1

Query:    1 MARVPKAAAGKKAATARPRGTAAXXXXXXXXXXXXXXAPKQPAQQPQRRKATTGTGGGAAAEKTPSAVMIDARPQLRELEANIARAADEVVREKIIGKSAEAVASGKATLANVDRARREALESAESTFDERHLSGAKAVKEHKPMVKRVDQKHVPXXXXXXXXXXXXXXXXXXXXXXXXXTLKALEDAMEQATAAIDKTHQAWAKRCKTQLDKMARTA 654
            MARVPKAAAGKKAATARPRGTAAXXXXXXXXXXXXXXAPKQPAQQPQRRKATTGTGGGAAAEKTPSAVMIDARPQLRELEANIARAADEVVREKIIGKSAEAVASGKATLANVDRARREALESAESTFDERHLSGAKAVKEHKPMVKRVDQKHVPXXXXXXXXXXXXXXXXXXXXXXXXXTLKALEDAMEQATAAIDKTHQAWAKRCKTQLDKMARTA
Sbjct:    1 MARVPKAAAGKKAATARPRGTAAXXXXXXXXXXXXXXAPKQPAQQPQRRKATTGTGGGAAAEKTPSAVMIDARPQLRELEANIARAADEVVREKIIGKSAEAVASGKATLANVDRARREALESAESTFDERHLSGAKAVKEHKPMVKRVDQKHVPXXXXXXXXXXXXXXXXXXXXXXXXXTLKALEDAMEQATAAIDKTHQAWAKRCKTQLDKMARTA 218

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353877 vs. uniprot

BLAST of jgi.p|Trimin1|353877 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZAS7_9STRA	9.430e-105	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_191	contig	Contig_191:96376..98938 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|353877\|estExt_Genemark1.C_Ctg_1910008
Hectar predicted targeting category	mitochondrion
TranscriptId	354199
Track	FilteredModels1
ProteinId	353877

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353877	gene_17240	Tribonema minus UTEX_B_3156	gene	Contig_191 96376..98938 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353877	Trimin1\|353877\|estExt_Genemark1.C_Ctg_1910008	Tribonema minus UTEX_B_3156	polypeptide	Contig_191 96376..98867 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17240_1	exon_17240_1	Tribonema minus UTEX_B_3156	exon	Contig_191 96376..96652 +
exon_17240_2	exon_17240_2	Tribonema minus UTEX_B_3156	exon	Contig_191 97316..97345 +
exon_17240_3	exon_17240_3	Tribonema minus UTEX_B_3156	exon	Contig_191 98146..98291 +
exon_17240_4	exon_17240_4	Tribonema minus UTEX_B_3156	exon	Contig_191 98397..98483 +
exon_17240_5	exon_17240_5	Tribonema minus UTEX_B_3156	exon	Contig_191 98751..98938 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17240	CDS_17240	Tribonema minus UTEX_B_3156	CDS	Contig_191 96376..96652 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_17240	UTR3_17240	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_191 98868..98938 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_191:96376..98938+
coding sequence from alignment at Contig_191:96376..98938+

spliced messenger RNA

>mRNA_17240 ID=mRNA_17240|Name=jgi.p|Trimin1|353877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=728bp|location=Sequence derived from alignment at Contig_191:96376..98938+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCGTGTTCCAAAGGCGGCGGCGGGCAAGAAAGCCGCCACAGCGAG
ACCCAGAGGGACAGCAGCGGCGGCGAAAGGCAAGCCTGCAGCGGCTGGGC
GACCCCCTCGTGCACCGAAGCAGCCTGCACAGCAGCCACAGCGGCGAAAG
GCGACAACAGGAACAGGCGGCGGCGCAGCGGCTGAAAAGACCCCGTCTGC
GGTTATGATTGACGCCAGGCCTCAGCTGAGAGAGCTGGAAGCTAACATCG
CGCGCGCCGCAGATGAGGTCGTGCGAGAGAAGATCATTGGAAAGAGCGCT
GAAGCCGTTGCCTCGGGCAAGGCGACGCTGGCCAACGTCGACCGCGCGCG
GCGCGAGGCCTTGGAGAGCGCAGAGTCCACCTTTGACGAGCGTCACCTGA
GCGGCGCCAAGGCCGTGAAGGAGCACAAGCCCATGGTCAAGCGTGTCGAC
CAGAAGCATGTGCCCACCTTTGAGGAGCGTCACCTGAGCGGCGCCAACGC
CGTGAAGGAGCGCAAGCCCATGGTGAAGCGCGTCGAGCAGACGCTCAAGG
CTCTCGAGGACGCCATGGAGCAGGCCACAGCGGCAATCGACAAAACCCAC
CAGGCCTGGGCCAAGCGCTGCAAGACGCAGCTTGACAAGATGGCCAGAAC
AGCATGAGTCATCCACAGCACGGCCAGACTGCCCCCCGACACCAGCCTTG
TTCGGCCTTTACAGGGGGAGGAGCACCA

protein sequence of jgi.p|Trimin1|353877

>Trimin1|353877|estExt_Genemark1.C_Ctg_1910008 ID=Trimin1|353877|estExt_Genemark1.C_Ctg_1910008|Name=jgi.p|Trimin1|353877|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=219bp
MARVPKAAAGKKAATARPRGTAAAAKGKPAAAGRPPRAPKQPAQQPQRRK
ATTGTGGGAAAEKTPSAVMIDARPQLRELEANIARAADEVVREKIIGKSA
EAVASGKATLANVDRARREALESAESTFDERHLSGAKAVKEHKPMVKRVD
QKHVPTFEERHLSGANAVKERKPMVKRVEQTLKALEDAMEQATAAIDKTH
QAWAKRCKTQLDKMARTA*

mRNA from alignment at Contig_191:96376..98938+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17240 ID=mRNA_17240|Name=jgi.p|Trimin1|353877|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2563bp|location=Sequence derived from alignment at Contig_191:96376..98938+ (Tribonema minus UTEX_B_3156 )
ATGGCTCGTGTTCCAAAGGCGGCGGCGGGCAAGAAAGCCGCCACAGCGAG
ACCCAGAGGGACAGCAGCGGCGGCGAAAGGCAAGCCTGCAGCGGCTGGGC
GACCCCCTCGTGCACCGAAGCAGCCTGCACAGCAGCCACAGCGGCGAAAG
GCGACAACAGGAACAGGCGGCGGCGCAGCGGCTGAAAAGACCCCGTCTGC
GGTTATGATTGACGCCAGGCCTCAGCTGAGAGAGCTGGAAGCTAACATCG
CGCGCGCCGCAGATGAGGTCGTGCGAGGTGAGAGCACCCCACGAGAAAAT
CGTCATCATCATGCTGGCTTCAAGCCGAGTCAATGCGTTAATCACTCGGA
TCGCTGTTCTCAGCGGCAGATTTTTTCCGCTGATGTGGCCAATGGCCGTG
CTTCTTGAGAGACTGGTTGACTTGATGTCTGCTGGCTTACTCTGAGGCAT
CTGCAGCAGTCAGGGCAGCACAGAATCGCAGCCCCTTTCTCATTCAGGCA
GTCCTGATGTGCTTGAAAGAGAATACATTGGTACTGGCAACTTGCTTGGA
TCAATTTTGATAGGTACATGTCGTGTGTGTGTGCACTGGCAGGGTGAAGT
CACAGGCCATGGCGCCATGCGAGGCCAACAGCTGGACTGGCCACTCCTTG
ACGCAGGCGGTAGCGCAGGCAGAGGTCGACGTGCACCGCACACCAGATGC
AGTGCCAACTACATCCCAGACTTAATGGCACGCTCAACGACCATGTCAGC
GATGCGGTGCTGACAGCGACGCCACCATACGCTACAATGACTCGCTGCCT
GCGTTACACGGTGGCGTTATGTAGCTACTTACCCCAATATGTACTCACCT
CGAATGTACCAAAAGCGCAAGCGGACGGATTCTCACTCTGCGCTTGCCTT
GCCTTTGCTGTGCTGTGCTCCCCCCCCCCCCCCCCCCCAGAGAAGATCAT
TGGAAAGAGCGCTGAAGCCGGTGAGTGGTGTTCACCTTCAACACTTAGCT
ACAGGAATGTGGACGTTGAGCGAGCAGAACATGCGCTGCATGCAGTACCT
GTGGGAGGTACATACAGAGGTACATTAATGGACGTAGGGGAGGATCCCGA
GATGCCATTTGGCGGCGGCGGCGTTTGAGTGGTTGTCGTTGAGACACTTT
CAGAAGTCACACGACATGCAGATTCCGTACAGCAGCATCGAGTTAGACCA
TCATCTGGGCTTTTTCGCGCCCTGAGCGAGAATTAATAAAAAGTACATGA
GAATTAATAAAAAGTACATGTTCCCCCGCAGCAGTGCACGTGGTGCTGCC
CACCTGAGCACACGAATGTGAGGGCCTCTCAAACAGCAAGAAGTACATAG
CTCTCCAAGAGCTTACAATTGAAAACACGTGATCGCAAATTGCCTTGCCC
TGCTCCACGTGTATCTGCACTGTGCTCAGAAGCGCACAAGGCGCAGCTTT
GCGACCGCAACTCGACCAGTGAGCACTATGCTATACAAGACTTGAAGCAT
ATTCAGTGGCAGCAACAGCCAGCTTCCTATGAAGCCATCTGCCCAATCGT
CCATGCGCTCGACAATCTTGGCATCCTGCTCGCTGAGCACTGGTGCTGTA
CCCACACGCCCGTCATGTGCTCCCTGGTGTTGCAGTTGCCGTGAGCAAGC
CAACTTATTGGCAAAATTTCACCAACATCCACCACTGACGCTGCAGCTAG
CATTGAAGCTCTTGTTGCGTATTGACGCCAGCATTCATCGTCTTGCGTCA
TCGCATCTGCATCATTGAAGTTGCCTCGGGCAAGGCGACGCTGGCCAACG
TCGACCGCGCGCGGCGCGAGGCCTTGGAGAGCGCAGAGTCCACCTTTGAC
GAGCGTCACCTGAGCGGCGCCAAGGCCGTGAAGGAGCACAAGCCCATGGT
CAAGCGTGTCGACCAGGTGACTCTCCACATACATGTCTCAGCTGCGCAAC
GCTCATGGAGCTTGGCAGGGGGACAACAGCCATGCCTGTCGGTTGCCATG
CCCATAAAGCTATACTCCTAGAAGCATGTGCCCACCTTTGAGGAGCGTCA
CCTGAGCGGCGCCAACGCCGTGAAGGAGCGCAAGCCCATGGTGAAGCGCG
TCGAGCAGGTGACTCTCCACGAGCATGCATCAGCCGCACGTGTAGTGCGG
CAGGAGGGCAACAGCCGTGTCCACTGTCTGCGGCACCCCTAAAGGTACAT
CAGCGCATGTGAGCGGTGTCGCTTGAAGCGCCGTCAGGAAACACATGCCT
CCAATGGTTAAGCACGTCGCACAGGTGACTCTCCATGGTGTGCACATACG
CAGCTGCACCAAGTGCACGCATGCACACAACACTGTTGTATGCTCAGACG
CGCCGCTCTGTCGCTTGCACCTCAGACGCTCAAGGCTCTCGAGGACGCCA
TGGAGCAGGCCACAGCGGCAATCGACAAAACCCACCAGGCCTGGGCCAAG
CGCTGCAAGACGCAGCTTGACAAGATGGCCAGAACAGCATGAGTCATCCA
CAGCACGGCCAGACTGCCCCCCGACACCAGCCTTGTTCGGCCTTTACAGG
GGGAGGAGCACCA

Coding sequence (CDS) from alignment at Contig_191:96376..98938+

>mRNA_17240 ID=mRNA_17240|Name=jgi.p|Trimin1|353877|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=657bp|location=Sequence derived from alignment at Contig_191:96376..98938+ (Tribonema minus UTEX_B_3156 )
ATGGCTCGTGTTCCAAAGGCGGCGGCGGGCAAGAAAGCCGCCACAGCGAG
ACCCAGAGGGACAGCAGCGGCGGCGAAAGGCAAGCCTGCAGCGGCTGGGC
GACCCCCTCGTGCACCGAAGCAGCCTGCACAGCAGCCACAGCGGCGAAAG
GCGACAACAGGAACAGGCGGCGGCGCAGCGGCTGAAAAGACCCCGTCTGC
GGTTATGATTGACGCCAGGCCTCAGCTGAGAGAGCTGGAAGCTAACATCG
CGCGCGCCGCAGATGAGGTCGTGCGAGAGAAGATCATTGGAAAGAGCGCT
GAAGCCGTTGCCTCGGGCAAGGCGACGCTGGCCAACGTCGACCGCGCGCG
GCGCGAGGCCTTGGAGAGCGCAGAGTCCACCTTTGACGAGCGTCACCTGA
GCGGCGCCAAGGCCGTGAAGGAGCACAAGCCCATGGTCAAGCGTGTCGAC
CAGAAGCATGTGCCCACCTTTGAGGAGCGTCACCTGAGCGGCGCCAACGC
CGTGAAGGAGCGCAAGCCCATGGTGAAGCGCGTCGAGCAGACGCTCAAGG
CTCTCGAGGACGCCATGGAGCAGGCCACAGCGGCAATCGACAAAACCCAC
CAGGCCTGGGCCAAGCGCTGCAAGACGCAGCTTGACAAGATGGCCAGAAC
AGCATGA