mRNA_17246 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|131217
Unique NamemRNA_17246
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A836CHI2_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI2_9STRA)

HSP 1 Score: 231 bits (589), Expect = 8.430e-77
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERPPV 357
            DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERPPV
Sbjct:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERPPV 119          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A835YS63_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS63_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.910e-24
Identity = 59/117 (50.43%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERP 351
            DV + + +LH   V+H DLKS N+L+F    AK+ DFGLA++   AST  TAA    P GT+AWMAPEI     +T A DV+S  ++M+E+LSGRVPFH   N VQ+  AV  G+RP
Sbjct:   72 DVAKAIEYLHMRGVVHRDLKSLNVLVFAGHCAKVCDFGLARIKQTASTFGTAA---RPVGTYAWMAPEIVDSDPYTPADDVYSLGLIMYEVLSGRVPFHD-KNGVQMMRAVTSGDRP 184          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A835Z762_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z762_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.930e-21
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERP 351
            DVTR +++LH + +LH DLKS N+L+FD  RAK+ D GLAK+     T  +      P G + WMAPEI     +TA AD++   M+M+E++SG+VPF    +P+ VA AV   ERP
Sbjct:  210 DVTRAISYLHQNGMLHYDLKSTNVLVFDKWRAKVCDIGLAKIDKI-QTSISHRSTKMPTGAY-WMAPEIMENKGYTAQADIYGIGMIMYEVISGKVPFEEMQDPLSVAKAVVPAERP 324          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: UPI0004416DC2 (kinase-like protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI0004416DC2)

HSP 1 Score: 93.2 bits (230), Expect = 1.420e-20
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGA-RHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERP 351
            DV  G+ +LH + ++HGD+K  N+L+ D  RA+LTDFGL  V   +        A+   G+  WMAPE+  G+ R T  +DV++ +M++FE+ +G+ PFH+C    QV L V RGERP
Sbjct:  127 DVASGLRYLHTNYLVHGDIKGANVLVDDEGRAQLTDFGLTAVMYESDAIGGLTTASFHDGSSRWMAPELYVGSVRLTPESDVYAFSMLLFEIYAGQPPFHSCRTDAQVFLMVLRGERP 244          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A835Z1I8_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1I8_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.390e-20
Identity = 52/115 (45.22%), Postives = 80/115 (69.57%), Query Frame = 1
Query:   13 GVAFLHASK--VLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERP 351
            G+ +LH  +  VLH DLKS N+L+F+  +AK+ DFGLA  T+  +   T    +  +GT+AWMAPEI  GA++T A+DV+S  ++++E++SG++PF    N +Q+AL + RGERP
Sbjct:  136 GMLYLHNHRPQVLHRDLKSANVLVFEGWQAKICDFGLA--TNFDANAHTTTRGSGMRGTYAWMAPEIMRGAKYTTASDVYSLGLIVYEVISGKIPFQD-QNLMQLALGLDRGERP 247          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A835Z025_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z025_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.840e-19
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 DVTRGVAFLHASK--VLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCAT-AAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERPPV 357
            DV R V FLH     ++H DL+S N+LIF N  AK+ DFGL K+   A   A+     A+P G +AWMAPE+  G  +   AD++S  M+M+E++SG++PFH   +  Q+  A  RG RP V
Sbjct:  113 DVARAVEFLHQCNPVIMHQDLRSANVLIFSNCCAKVADFGLPKIPKVALAIASNLVTMATPTGAYAWMAPEVMDGEPYGVRADIYSMGMIMYEVVSGKLPFHD-HSLAQLMRATLRGRRPEV 233          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A4Y7SKP4_9AGAR (Kinase-like protein (Fragment) n=1 Tax=Coprinellus micaceus TaxID=71717 RepID=A0A4Y7SKP4_9AGAR)

HSP 1 Score: 88.2 bits (217), Expect = 2.220e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAA--GAASPKGTWAWMAPEI-----GAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERPP 354
            D+  G+++LH +K++HGDLK PNIL+  + RA L DFGL+++   A    T+   G A   GT  W APE+      A  + T A+DV+S   V +E+++G VPFH   N   + + V  G RPP
Sbjct:  140 DIASGLSYLHKNKIVHGDLKGPNILVSTSGRACLADFGLSRLADPALLGWTSVRTGTAKSTGTARWQAPELLDPDDEADPKTTTASDVYSYGCVGYEIMTGNVPFHTTKNHYSIPMLVVAGHRPP 264          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A0L0T1C7_ALLM3 (TKL protein kinase n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T1C7_ALLM3)

HSP 1 Score: 89.0 bits (219), Expect = 3.010e-18
Identity = 48/119 (40.34%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEIGA-GARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERPP 354
            +  +G+A+LH+ ++ HGDLK+ N+LI  + RAK+ DFG+A++ +AA   A+A    S  G   W+APE  A GA++    DVF+ AMV++E+++G+VPF     P  +  ++ +G+RPP
Sbjct:  358 ETAQGMAYLHSKRIFHGDLKANNVLIDYSGRAKVCDFGMARLLAAAGARASAYSPGSSAGNVRWIAPERYAHGAKYQFEPDVFAFAMVVYEVIAGKVPFSNEHEPNVIMFSIQQGKRPP 476          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A137R1Q0_9AGAR (Mitogen-activated protein kinase kinase kinase 2 n=1 Tax=Leucoagaricus sp. SymC.cos TaxID=1714833 RepID=A0A137R1Q0_9AGAR)

HSP 1 Score: 85.5 bits (210), Expect = 7.990e-18
Identity = 50/119 (42.02%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCATAAGAASPKGTWAWMAPEI--GAGARHTAAADVFSGAMVMFELLSGRVPFHACANPVQVALAVARGERP 351
            DV  G+ +LH  +V+HGDLK  N+LI  +  A+L DFGL+ +     T +TA G   P+GT  WMAPE+  G   R   ++D++S A VM+E+L+GR+PF     P  V   V +G +P
Sbjct:   62 DVLAGLNYLHDHEVVHGDLKGVNVLIDIDGMARLADFGLSTLIDPLGTVSTAQG---PRGTIRWMAPEVLEGKVVRPCPSSDIYSVASVMYEILTGRIPFSNLPRPESVMWKVMQGVKP 177          
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Match: A0A836CB95_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB95_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.120e-18
Identity = 62/132 (46.97%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTC---ATAAGAASPKGTWAWMAPEIGAGAR----HTAAADVFSGAMVMFELLSGRVPFHACA-----NPVQVALAVA-RGERPPV 357
            D+  G+ FLH ++V HGDLKS N+LI D  RAKLTDFGL++ T A S+    +T AG     GT AWMAPE  +  R    H A +DV+S A+V +E+L+G +   A       + V V  AVA RGERPP+
Sbjct:   75 DIAAGMLFLHDNRVHHGDLKSQNVLITDWGRAKLTDFGLSRTTDAVSSFTGRSTLAG-----GTVAWMAPEAFSARRRSAEHCALSDVYSYAIVTWEVLAGAIGGDAAIPWCGLSIVDVIAAVAIRGERPPL 201          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|131217 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CHI2_9STRA8.430e-77100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YS63_9STRA1.910e-2450.43Kinase-like domain-containing protein (Fragment) n... [more]
A0A835Z762_9STRA1.930e-2145.30Kinase-like domain-containing protein n=1 Tax=Trib... [more]
UPI0004416DC21.420e-2042.37kinase-like protein n=1 Tax=Punctularia strigosozo... [more]
A0A835Z1I8_9STRA2.390e-2045.22Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A835Z025_9STRA2.840e-1943.44Kinase-like domain-containing protein (Fragment) n... [more]
A0A4Y7SKP4_9AGAR2.220e-1840.00Kinase-like protein (Fragment) n=1 Tax=Coprinellus... [more]
A0A0L0T1C7_ALLM33.010e-1840.34TKL protein kinase n=1 Tax=Allomyces macrogynus (s... [more]
A0A137R1Q0_9AGAR7.990e-1842.02Mitogen-activated protein kinase kinase kinase 2 n... [more]
A0A836CB95_9STRA8.120e-1846.97Kinase-like domain-containing protein n=2 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_191contigContig_191:150454..151344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|131217|gw1.191.6.1
BRITEko00000,ko00001,ko01000,ko01001,ko04131
KEGG Pathwayko04520,map04520
KEGG koko:K05705
EC2.7.10.2
Descriptionkinase-like protein
COG categoryT
Max annot lvl4751|Fungi
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,3AKGA@33154|Opisthokonta,3PEB7@4751|Fungi,3V5KH@5204|Basidiomycota,22A44@155619|Agaricomycetes,3H5H5@355688|Agaricomycetes incertae sedis
Evalue2.33e-21
Seed ortholog202698.XP_007381563.1
Hectar predicted targeting categoryother localisation
TranscriptId131539
TrackFilteredModels1
ProteinId131217
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131217gene_17246Tribonema minus UTEX_B_3156 geneContig_191 150454..151344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17246_1exon_17246_1Tribonema minus UTEX_B_3156 exonContig_191 150454..150546 +
exon_17246_2exon_17246_2Tribonema minus UTEX_B_3156 exonContig_191 151081..151344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17246CDS_17246Tribonema minus UTEX_B_3156 CDSContig_191 150454..150546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|131217Trimin1|131217|gw1.191.6.1Tribonema minus UTEX_B_3156 polypeptideContig_191 150454..151344 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17246 ID=mRNA_17246|Name=jgi.p|Trimin1|131217|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=357bp|location=Sequence derived from alignment at Contig_191:150454..151344+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACGTCACCCGCGGCGTCGCCTTCCTGCACGCCTCCAAGGTCCTACATGG
CGACCTAAAGTCTCCCAACATTTTAATCTTCGACAACATGCGGGCCAAGC
TGACCGACTTCGGCCTCGCCAAGGTCACCTCCGCCGCCTCCACATGCGCA
ACCGCCGCCGGCGCCGCGTCCCCCAAGGGCACCTGGGCGTGGATGGCACC
CGAGATAGGCGCCGGCGCGCGCCACACCGCCGCCGCAGACGTCTTCAGCG
GCGCCATGGTCATGTTCGAGCTGCTGAGCGGGCGCGTGCCATTCCACGCG
TGCGCGAACCCCGTGCAGGTGGCGCTCGCGGTGGCGCGCGGCGAGCGCCC
GCCGGTG
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protein sequence of jgi.p|Trimin1|131217

>Trimin1|131217|gw1.191.6.1 ID=Trimin1|131217|gw1.191.6.1|Name=jgi.p|Trimin1|131217|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
DVTRGVAFLHASKVLHGDLKSPNILIFDNMRAKLTDFGLAKVTSAASTCA
TAAGAASPKGTWAWMAPEIGAGARHTAAADVFSGAMVMFELLSGRVPFHA
CANPVQVALAVARGERPPV
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mRNA from alignment at Contig_191:150454..151344+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17246 ID=mRNA_17246|Name=jgi.p|Trimin1|131217|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_191:150454..151344+ (Tribonema minus UTEX_B_3156 )
GACGTCACCCGCGGCGTCGCCTTCCTGCACGCCTCCAAGGTCCTACATGG CGACCTAAAGTCTCCCAACATTTTAATCTTCGACAACATGCGGGTGAGTG GTCGGTCCCCCTGGGCTCCCCCTCCCCTTTGTCAGCACTATGAGGGCATG AGGGGGGCGAGTGGGCCCCCTAGGCTCCCTCTTCCCCTTAGCAGCTGGCT AGCCCAATGAGGCCATCGACAGCATGCCTTGTCATATATGTATGTATGAA GCGGATGCTGCCATGTTCTGCATGCGGCGCAGAGTTAGGGTCACGGTGAG GGTTAGACTGTACGGCAGGTCCGTGGCAGAACTGTGCAGCAGCGTCAACG ATCGCTCATATCCTCTGTCCACCGAGCCAGCGTGATGCCCTGCACCGTCT GCACGTGTTCCTAGCTCACTGAACCGCCCTCAATCTCCCCCTGTACCCCT ACCCCACCCCATCACCCCATCCCCCCCGCCCCCCCTCCCCAGAGCAAGCG AGCGGGATCCCCTGCTGCACCATCTGCAAGTGTCGCCAGCTCACCCCCCC CCCCCCCTCCCCAGTGTTGCCAGCTCACCCACCCCCCTCCCTTCCCCCCC CCAACCCCCCCCCCCCTCTCGCAACAGGCCAAGCTGACCGACTTCGGCCT CGCCAAGGTCACCTCCGCCGCCTCCACATGCGCAACCGCCGCCGGCGCCG CGTCCCCCAAGGGCACCTGGGCGTGGATGGCACCCGAGATAGGCGCCGGC GCGCGCCACACCGCCGCCGCAGACGTCTTCAGCGGCGCCATGGTCATGTT CGAGCTGCTGAGCGGGCGCGTGCCATTCCACGCGTGCGCGAACCCCGTGC AGGTGGCGCTCGCGGTGGCGCGCGGCGAGCGCCCGCCGGTG
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Coding sequence (CDS) from alignment at Contig_191:150454..151344+

>mRNA_17246 ID=mRNA_17246|Name=jgi.p|Trimin1|131217|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_191:150454..151344+ (Tribonema minus UTEX_B_3156 )
GACGTCACCCGCGGCGTCGCCTTCCTGCACGCCTCCAAGGTCCTACATGG
CGACCTAAAGTCTCCCAACATTTTAATCTTCGACAACATGCGGGCCAAGC
TGACCGACTTCGGCCTCGCCAAGGTCACCTCCGCCGCCTCCACATGCGCA
ACCGCCGCCGGCGCCGCGTCCCCCAAGGGCACCTGGGCGTGGATGGCACC
CGAGATAGGCGCCGGCGCGCGCCACACCGCCGCCGCAGACGTCTTCAGCG
GCGCCATGGTCATGTTCGAGCTGCTGAGCGGGCGCGTGCCATTCCACGCG
TGCGCGAACCCCGTGCAGGTGGCGCTCGCGGTGGCGCGCGGCGAGCGCCC
GCCGGTG
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