mRNA_17236 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|35902
Unique Name	mRNA_17236
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835Z4B2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B2_9STRA)

HSP 1 Score: 466 bits (1200), Expect = 1.330e-156
Identity = 502/502 (100.00%), Postives = 502/502 (100.00%), Query Frame = 3

Query:   54 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 1559
            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
Sbjct:    1 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 502

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835YK96_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK96_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.420e-51
Identity = 97/132 (73.48%), Postives = 102/132 (77.27%), Query Frame = 3

Query: 1161 CTVIVSGTTFSGNCYKPADAPANQNLLDAGVGTCTDTTDCAQRCFIPNASTGLCGTNTCSGGEICRCYQKVTGVTGASCKPEDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTSCSRRTFAELVL 1556
            CTVI+ G  F G C+ P   P  QNLLDAGVGTC +T  C QRCFIPN S GLCGTNTCSGGEICRCY KV GV GASCK  DLV VA GA VS GGGC+ENACNA TN QGT AGCCPTSCSRRTFA+L L
Sbjct:  799 CTVILRGNPFPGTCFIPGQQPTGQNLLDAGVGTCINTPACPQRCFIPNDSQGLCGTNTCSGGEICRCYNKVLGVMGASCKQADLVDVAPGAIVSNGGGCAENACNAATNIQGTAAGCCPTSCSRRTFADLFL 930

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835ZBN2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBN2_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.620e-37
Identity = 80/137 (58.39%), Postives = 95/137 (69.34%), Query Frame = 3

Query: 1161 CTVIVSGTTFSGNCYKPADAPANQNLLDAGVGTCTD-TTDCAQRCFIPNASTGLCGTNTCSG-GEICRCYQKVTGVTGASCKPEDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTS-CSRRTF-AELVLN 1559
            CTV++SG +++GNCY     P NQNL+  GVG+CT    +C Q C+IPN + GLCG NTCS  G  CRCY K T  TGASCKP DL+GV   +TV QGGGC EN CNAIT     GAGCCPTS C+RRT  AEL+ +
Sbjct:   32 CTVLISGVSYTGNCYVRNQQPLNQNLVGGGVGSCTSFLPNCDQLCYIPNDAAGLCGDNTCSSKGYKCRCYLKST--TGASCKPGDLIGVNPASTVDQGGGCQENRCNAITTA--VGAGCCPTSPCARRTLLAELLAD 164

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835YTT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 6.910e-35
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 3

Query: 1143 CISAVPCTVIVSGTTFSGNCYKPADAPANQNLLDAGVGTCTDTTDCAQRCFIPNASTGLCGTNTCSGGEICRCYQKVTGVTGASCKPEDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTS 1523
            C + V C V V  + +SG CY P   PA+ NLL AG G C  T  CAQ C+I N S GLC ++ CSGG  CRCY+KV G TGA CK ++LVGVA GA +  GGGCSEN CNA+T++  + A CCPTS
Sbjct:  144 CTNGVSCKVTVGTSEYSGLCYIPGQEPADGNLLRAGNGDCPQTAYCAQACYISNTSDGLCASSECSGGNRCRCYKKVAGQTGADCKADELVGVAPGAVIDTGGGCSENNCNALTDSS-SAAACCPTS 269

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A836CK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK65_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.170e-32
Identity = 79/137 (57.66%), Postives = 93/137 (67.88%), Query Frame = 3

Query: 1161 CTVIVSGTTFSGNCYKPADAPANQNLLDAGVGTCTD-TTDCAQRCFIPNASTGLCGTNTCSG-GEICRCYQKVTGVTGASCKPEDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTS-CSRRTF-AELVLN 1559
            CTV++S   ++GNCY     P NQNL+ AGVG+CT    +C Q C+IPN + GLCG NTCS  G  CRCY K T  TGASCKP DL+GV    +V QGGGC EN CNAIT     GAGCCPTS C+RRT  AEL+ +
Sbjct:  449 CTVLISNVPYTGNCYVRNQQPLNQNLVGAGVGSCTSFLPNCDQLCYIPNDAAGLCGDNTCSSKGFKCRCYLKTT--TGASCKPGDLIGVNPNTSVDQGGGCQENRCNAITTA--IGAGCCPTSPCARRTLLAELLAD 581

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835Z3V6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.090e-30
Identity = 63/101 (62.38%), Postives = 78/101 (77.23%), Query Frame = 3

Query:  135 RVLWGCPTGTACSYNCEEHCNIACAKLNVPFKSNAQCSRVSARRQL----AVAQTYRTCSNPAPGARALLGEDADDRDLAGAQ--NDTGLCCYCHRAPTPA 419
            ++L  CP G+ACSYNCE+HC IAC KL++PFKS++QCSRV  RR+L    A AQT+RTCS P P A   LG++ D R LAGA+  ++TGLCCYCHRAPTPA
Sbjct:   19 KLLDTCPLGSACSYNCEDHCKIACDKLHIPFKSSSQCSRVQTRRELMRKLAAAQTFRTCSTPQPSASRALGDEGDHRGLAGARTSSETGLCCYCHRAPTPA 119

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835YRQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRQ4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.370e-29
Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 3

Query: 1161 CTVIVSGTTFSGNCYKPADA-PANQNLLDAGV-GTCTDTTDCAQRCFIPNASTGLCGTNTCSGGEICRCYQKVTGVTGASCKPEDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTSCSRRTFAELVLN 1559
            CTV++S TTFSG CY      P   N +D+G+ G C     CAQ C+I N + GLC +NTCS  +ICRCY+KV G TGA+C   +L+GVA   ++S GGGCSEN CNAI+   G  A CCPT+C+RR     +LN
Sbjct:  417 CTVMISSTTFSGLCYPGGTTTPPITNYVDSGMPGGCGG---CAQSCWISNTAPGLCSSNTCSANKICRCYRKVAGATGANCAEGELIGVAVPGSISNGGGCSENLCNAISG-NGQAAACCPTACARRALLAELLN 547

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A836CGA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGA8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.430e-26
Identity = 64/135 (47.41%), Postives = 82/135 (60.74%), Query Frame = 3

Query: 1161 CTVIVSGTTFSGNCY--KPADAPANQNLLDAG-VGTCTDTTDCAQRCFIPNASTGLCGTNTCSGGEICRCYQKVTGVTGASCKPEDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTSC-SRRTFAELV 1553
            C+  VSGT  SG CY   P D P   N +D+G   TC     CAQ C++ N + GLC ++ CSGGE CRCY+KV G +GA+C    L+GVA   ++S GGGC+EN CNA     G    CCPT+C +R   AEL+
Sbjct:  328 CSTTVSGTALSGKCYPNSPQDPPPVPNYIDSGDASTCGG---CAQTCWVSNDAPGLCNSSACSGGEQCRCYKKVPGTSGAACSEAKLLGVAVPGSISSGGGCAENLCNAFATKSGGSGACCPTACVARSLLAELL 459

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835YQS7_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.380e-11
Identity = 49/119 (41.18%), Postives = 60/119 (50.42%), Query Frame = 3

Query:   75 LLVALSVVALGAVAEEEQVERVLWGCPTGTACSYNCEEHCNIACAKLNVPFKSNAQCSRV----SARRQLAVAQTYRTCSNPAPGARALLGEDADDRDLAGAQNDTGLCCYCHRAPTPA 419
            LL+ L +VALGAV ++                      HC IAC KL++PF+S +QCSRV      RR+L     Y   S          G+  DDR+L     DTGLCCYCHRAPTPA
Sbjct:    6 LLLLLPLVALGAVNDD----------------------HCKIACDKLHIPFQSQSQCSRVRVTREGRRELTYRNDYHIGSVTEESDVLFDGDGNDDRELT----DTGLCCYCHRAPTPA 98

[Close]

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Match: A0A835YTG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.250e-10
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 3

Query:   57 MKLQLALLV---ALSVVALGAVAEEEQVERVLWGCPTGTACSYNCEEHCNIACAKLNVPFKSNAQCSRVSARRQL 272
            MKL L L      L  +ALG    E     ++  CP+G+AC++NCE+HC  AC KL++P+KS+ QCSRV  RR+L
Sbjct:    1 MKLYLVLAAYAALLPSIALGTATSEHAERELVSTCPSGSACAFNCEDHCKTACDKLSIPYKSSTQCSRVRTRREL 75

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|35902 vs. uniprot

BLAST of jgi.p|Trimin1|35902 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
A0A835Z4B2_9STRA	1.330e-156	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YK96_9STRA	1.420e-51	73.48	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZBN2_9STRA	1.620e-37	58.39	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YTT6_9STRA	6.910e-35	55.12	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CK65_9STRA	1.170e-32	57.66	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z3V6_9STRA	3.090e-30	62.38	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YRQ4_9STRA	5.370e-29	51.11	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CGA8_9STRA	2.430e-26	47.41	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YQS7_9STRA	2.380e-11	41.18	Glycoside hydrolase superfamily n=1 Tax=Tribonema ...	[more]
A0A835YTG7_9STRA	2.250e-10	46.67	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_191	contig	Contig_191:46249..53574 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|35902\|CE35901_436
Hectar predicted targeting category	signal peptide
TranscriptId	36224
Track	FilteredModels1
ProteinId	35902

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|35902	gene_17236	Tribonema minus UTEX_B_3156	gene	Contig_191 46249..53574 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|35902	Trimin1\|35902\|CE35901_436	Tribonema minus UTEX_B_3156	polypeptide	Contig_191 46302..53418 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17236_1	exon_17236_1	Tribonema minus UTEX_B_3156	exon	Contig_191 46249..46367 +
exon_17236_2	exon_17236_2	Tribonema minus UTEX_B_3156	exon	Contig_191 47418..47591 +
exon_17236_3	exon_17236_3	Tribonema minus UTEX_B_3156	exon	Contig_191 49213..49362 +
exon_17236_4	exon_17236_4	Tribonema minus UTEX_B_3156	exon	Contig_191 49855..49881 +
exon_17236_5	exon_17236_5	Tribonema minus UTEX_B_3156	exon	Contig_191 50425..51072 +
exon_17236_6	exon_17236_6	Tribonema minus UTEX_B_3156	exon	Contig_191 52013..52051 +
exon_17236_7	exon_17236_7	Tribonema minus UTEX_B_3156	exon	Contig_191 53014..53574 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_17236	UTR5_17236	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_191 46249..46301 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17236	CDS_17236	Tribonema minus UTEX_B_3156	CDS	Contig_191 46302..46367 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_17236	UTR3_17236	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_191 53419..53574 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_191:46249..53574+
coding sequence from alignment at Contig_191:46249..53574+

spliced messenger RNA

>mRNA_17236 ID=mRNA_17236|Name=jgi.p|Trimin1|35902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1718bp|location=Sequence derived from alignment at Contig_191:46249..53574+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCACAACACTCTCGCCGACCACACGCCGACCGCAGCACTCACCCAAGCAG
CAGATGATGAAGCTCCAACTGGCGTTGCTGGTGGCGCTGTCCGTCGTCGC
CCTGGGGGCAGTGGCCGAGGAAGAGCAGGTGGAGCGCGTGCTGTGGGGGT
GCCCAACGGGCACGGCGTGCTCGTACAACTGCGAGGAGCACTGCAACATT
GCGTGCGCCAAGCTCAACGTCCCCTTCAAGAGCAACGCTCAGTGCTCGCG
CGTGAGCGCGAGGCGCCAGCTGGCGGTGGCCCAGACATACAGGACGTGCT
CGAACCCCGCGCCGGGGGCGCGCGCGCTGCTGGGCGAGGACGCCGACGAC
CGCGACCTGGCGGGCGCCCAGAACGACACGGGCCTGTGCTGCTACTGCCA
CCGCGCGCCGACGCCGGCGCCCACGCGGAAGCCGACGCAGAAGCCGACCA
CGCGAAAGCCCACCCAGAAGCCTACCAGCAACCCCACCGCACACCCTACC
AGCAAGCCCACCGCACACCCTACCAGCAAGCCCACCGCACACCCTACCAG
CAAGCCCACCGCCCACCCTACCAGCAGCCCCACTAGGAAGCCTACGAGCA
AGCCCACGGCGAAGCCTACCGCTAAGCCCACCGCTAAGCCCACCGCTAAG
CCCACGGCGAAGCCTACGAGCAAGCCCACCGCTGAGCCCACGGCTAAGCC
TACCGCTACGCCTACCGCCACCCCCACGGCTACCCCCACCGCTAAGCCCA
CCGCTAAGCCCACGGCTAAGCCTACCGCTAAGCCCACGGCTAAGCCTACC
GCTAAGCCCACGGCTAAGCCTACCGCTAAGCCCACCGCTAAGCCCACCGC
TAAGCCCACGGCGAACCCCACGTCGAACCCTACGGCTAACCCTACGGCTA
ACCCCACGTCGAACCCTACTGCTAACCCCACGGCTAACCCCACGGCTAAC
CCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCC
CACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCA
CGGCTACCCCTACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACG
GCTAACCCCACCGCCCAGCCAACCCTTCAGCCAACACCAGGGTGCATCTC
AGCAGTGCCTTGCACGGTCATCGTCAGCGGCACCACCTTCTCCGGCAACT
GCTACAAACCCGCGGACGCGCCCGCCAACCAGAACCTGCTGGACGCAGGC
GTCGGCACCTGCACGGACACCACTGACTGTGCGCAGCGCTGCTTCATCCC
CAACGCCAGCACCGGGCTCTGCGGCACCAACACGTGCTCCGGCGGCGAGA
TCTGCCGCTGCTACCAGAAGGTCACCGGCGTCACGGGCGCGTCGTGCAAG
CCGGAGGACCTCGTGGGCGTCGCCGAGGGCGCGACCGTCAGCCAGGGCGG
CGGCTGCTCCGAGAACGCGTGCAACGCCATCACCAACACGCAGGGCACGG
GCGCGGGGTGCTGCCCCACGAGCTGCTCGCGCCGCACGTTCGCCGAGCTG
GTCCTCAACTAAGCGCAAGTGGCGGCGACGACGGCAGCCATGTCCGAGTG
CGGCACGGAGAGTAGAGGGAGCGGGCGACGTCATTGGACAGCGGCCGCCT
GCCGCTGCCGCCCATGTGTCGGTTGCTCAGCTGCGGTCGCGCTGAGCGCT
GCCGTGTCGGCGCGCGCG

protein sequence of jgi.p|Trimin1|35902

>Trimin1|35902|CE35901_436 ID=Trimin1|35902|CE35901_436|Name=jgi.p|Trimin1|35902|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=503bp
MMKLQLALLVALSVVALGAVAEEEQVERVLWGCPTGTACSYNCEEHCNIA
CAKLNVPFKSNAQCSRVSARRQLAVAQTYRTCSNPAPGARALLGEDADDR
DLAGAQNDTGLCCYCHRAPTPAPTRKPTQKPTTRKPTQKPTSNPTAHPTS
KPTAHPTSKPTAHPTSKPTAHPTSSPTRKPTSKPTAKPTAKPTAKPTAKP
TAKPTSKPTAEPTAKPTATPTATPTATPTAKPTAKPTAKPTAKPTAKPTA
KPTAKPTAKPTAKPTAKPTANPTSNPTANPTANPTSNPTANPTANPTANP
TANPTANPTANPTANPTANPTANPTANPTANPTATPTANPTANPTANPTA
NPTAQPTLQPTPGCISAVPCTVIVSGTTFSGNCYKPADAPANQNLLDAGV
GTCTDTTDCAQRCFIPNASTGLCGTNTCSGGEICRCYQKVTGVTGASCKP
EDLVGVAEGATVSQGGGCSENACNAITNTQGTGAGCCPTSCSRRTFAELV
LN*

mRNA from alignment at Contig_191:46249..53574+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17236 ID=mRNA_17236|Name=jgi.p|Trimin1|35902|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7326bp|location=Sequence derived from alignment at Contig_191:46249..53574+ (Tribonema minus UTEX_B_3156 )
GCACAACACTCTCGCCGACCACACGCCGACCGCAGCACTCACCCAAGCAG
CAGATGATGAAGCTCCAACTGGCGTTGCTGGTGGCGCTGTCCGTCGTCGC
CCTGGGGGCAGTGGCCGAGGTGAGAGTCTAATCTAATCTCAGCGCACTCC
TTGCGACAAAGATTCAGTGCATGCTCATCACTCGTGATCACTTGTGCAGG
CACCGAAGGGTAGATTGAAAGTTATTGGTGTCTAGTGCTTACATAGTGCC
ACTGAACAGCAATATGCAGGATGAAGTTCTTCGTGTGATCCAGACAGCGC
AGCTACAGGGTCACCACGAGCTTCTGCACCTGATGCGGTAAAATGACAGC
GACAGCGACAGCTTTTTTGAGTTTGCATGCGACTCGGCGACGGTCACCGC
CAAGCACTATGTAGCGGAGTTGCGGCTCCTGCGTGTGCGACGTCTGGCAC
TTGACGTCACACTTGGTGCTTCCAGAATCCTTTCGTCGTTGACCGCTACT
ACAGTACCCGCACCAGCATCGTGGGTAAAGCTTCACGTTGCCAATCACTT
ATTTAAAACCCTCCAATCTTAACGCACTTCAAACGGTCGTTCGAGTTGTA
GGTCTAGTGTTAGTAATACGCTAACGGCCGGCATCAAAATCATGCTGAGC
CTGAGGTCTTCCTTCATGCTTGTGTGTGGCCTTGCTTCATGCTAGTGAGT
GATTGGCTTCTTCTTTTCAAACAACAAGCAACAGTTTGCTTTAACAGATA
ATATATCAGATTCTGTGACGGGCGATATTTGATAGGCTTTCTGAATAAGC
TCATCAACCACAGGCACTTCTGAATCATCGGATCCCGCGCTTTACAAACA
GTATCTTCTGATTCACCCGATTCGGTGCGGTGCTCAGATAACCGTAGTAG
TCCGTTACGGTACCATGACAAAATGTGAGTTCAGTCAGCACCATCACGGC
TGTGCTGCACACTACATTGCATCATCAACTACTGTAACAGCACGTTCAGT
AATCCGAAGTTGACACAATGTGCCTACTAGTGGTACGTCAATGTCATTGA
GCATCATGCGCGTCGTCAACAGATTATCTGATCATCAGCTCCCCGCTGGC
ATCGGCTCTTTCCGTGCGCATCAAAATCTCACAGCTATGATAATGATCCG
CCCCGCAAACTTTAAGCAGGAAGAGCAGGTGGAGCGCGTGCTGTGGGGGT
GCCCAACGGGCACGGCGTGCTCGTACAACTGCGAGGAGCACTGCAACATT
GCGTGCGCCAAGCTCAACGTCCCCTTCAAGAGCAACGCTCAGTGCTCGCG
CGTGAGCGCGAGGCGCCAGCTGGCGGTGGCCCAGACATACAGGGTGAGCA
CCAGTAGCGCGGGACGTCTCACAACACAACTGAATGCGGACGGAGGGTCT
ATGTTGAGTCGTGTCCAGTGGCACTAGCAGGTGTTATAGTGACAGTTACT
GACTCAGAGTCTGTCAGTGATCTGAGTCAAGCAGGGCGATGTGTACAGAA
TCTGTTTCCGTTACGGAATCTGTCAGTGGCATGCTGCTTGTAGGTAATAG
TATGTACTACAAGTAGTTGTTGACACCAGTTCCCACACGACTTTCCAATT
GCCCACAGACAAATACCTCACACAGCCGTTTCTGGGCAGAGCCGCTTCAA
AGTTTGAGTGCGTTTGTTACCATGACGCTGTAGCAGTTGCAGGCGATTTG
GTTTCGAAGCAAAACCCAGACTTCGCGACTCTCAGAGGCTTGTTGAGTTT
GCCTATGAGTAAGTGAGTGAGCCTTGACTTGATGCACAACCAGTGACTGC
ACCGCGTGCTGCTGTCGTTGTGAGCACTGCAGGCATACTTTCGTCTCAGC
CGAGCCTAGATCTTTTGATTCAGAAATGCATGCAGTTATGTGTCTATTTA
CAAACTGATGTAACAGTTCCATTTGCCGCACCGAGACCGCCGCCACCTCT
GCAACCTGTCTGAGACGCACTCGTGTACCCACTTACTGCAAGCCGTGCCC
CATGCCCAGGTGACCTGTTCTTAGACTGCACCACAGTGACTTTTGATGTA
ACAAATACAGTAACTGTAACAGTAACAGTACATGCTGATTCCAAGCCGCA
CGAGCCGTGCCCTCGGGCTGTGCCCACCTCCAAGTTCTTCTTAGGGCACG
CCACTTGTGTAGCTGCACGCTATTGCTAATAGAAGATTGTGATCATCGCT
CACTGCCCCGGTGCGCACCTCCCATTCTGCTGACGCGCTCGACGCCGGCG
CCGTGACCTTTTCAGACCGATCACTCGACGTGATGTGCGGGCCATTGCTA
GTAGTAGTTCATAGATCATCGCCGCTGACGACCGCTGCACACTGTGGCAG
TGACTGCGCGCCTCCGAGTCTGCAGACGCGCTCGACAGGCGCGCTCGATG
CTTTTGGACTGGCGCCATGCCTGATGTCCAGGCTGCCTTCTTACTAGTAG
ACCGCGCCGCTCGTGATGCTGCGCGCCATTGCCAATAGTGGATGGATCAT
CGCTGATGACCGCGGCACTGCGCGCCTCTGCAGAGTCTGACGTGGTTGCA
GCAGACGCGCTCGACGCCTTCTCAGACTGCGCCGCTGTGGCACTCTTGAT
GTACAAGCCACAGTGGCTGCAGCTAGTACTAATAGTCAATAGATCACCGT
CACTGACCGCTGCACTGCGCGCCCCTGCAGACGTGCTCGAACCCCGCGCT
GGGGGCCCCTCTTCTGCGCAGGCTGCCTTGGTAGACCGCGCCACTCTTGA
TGTAACAGTCCTCTCTGTTGCAAATACCAGTTCTACTAGTGGTAGATGGC
TGACGACCGCTGCACCGCGCCTCTGCAGACGCGCTCGACGCCCGCGCCCG
GCGCCCCTCTTCTGCGCGGGCTGCCTTGCCACTCTTGATATGCTCTCTGT
CACAAACTTTGAATACCAGTAGTAGATGGCTGACGATTGCTGCACTGCGC
TTTTGAGTGTACAGACGTGCTCGAACCCCGCGCCGGGGGCGCGCGCGCTG
CTGGGCGAGGACGCCGACGACCGCGACCTGGCGGGCGCCCAGAACGACAC
GGGCCTGTGCTGCTACTGCCACCGCGCGCCGACGCCGGCGCCCACGCGGA
AGCCGACGCAGAAGGTGCGTAACTGTCTTTAACAGTAACTTAGAAGTATA
TTGACTCGAACGCTGGAAAGCTTGCACACAGAAAGTCTTTTTGCCTACTG
CGGTTGTGGCGGCACTGTTTGACGCGTGGCAATATATACTACATGCATGC
GCTCTTGGGCGTGCGTAAATCGACCAGTGTGTCGGCATCCGGTGTGAGGC
TATTAGTAGTAGTAGTAGTACGCATGCGCTGTTTGGTGTGCGCTTCGTCA
CCTGGCAGTGCCGCATTTGCACACGCAGAACGCGGAACATGCATCCACCT
GACTCTGTCAGAGCCGCCGTGTTGTAGAGCAGACTGGCAGCGCGTCACTG
GTGAACGCACATACCCTTTGTAGCGCTTGGGCCGTGGATGTAAAGTTGAA
GTTGAGCTTTTTGTCTCGCGCGCGTCCATCCCGACACGCCATGACGGGTG
TATACTGACGCGTTCTTATGTGTGCGCTTCTGCCTGTTTGTGCCGCCGCC
GCGCAGCCGACCACGCGAAAGCCCACCCAGAAGGTGCGCACTGCTTGCAC
GTGTATCATCTTGTCAGCAACACAAGTAGCAGCTTGGGAATGGCAAATGA
TTGCTTTCAAGGTTGTTATCACAAGCTGTGAAGTGTGTGATGGTCTCAAG
TCATTTGTAAGAGTCAGCTGGGCCCACCGCGAAGTCAGCGGCTGAGCCCA
CTTCAGAACCCATTGTTCGGGTATCAAGACTTGTGAACTGAAAAATCATA
CATCATGTGGTGTAGCATTTCCCGTCACTGTGCACCCAGACTCAGATTCT
GCCCTCTCGTCCACTTTGTCAGCTACTGTCAGTAGGGCGAATGCCCATCG
CAAACCGGCGGTGGACAGTTCTGAAGCCCAGCGTCCCCTTTGACTGCCTG
CACCCAAAGTCGCGGCGGAGCCAACTCTGCAGCTTAGGGTTAGGGTTAGA
GCATCTGCGTGACAGCTGCGCGCGTGCGCACACGATGGCCTGCGGACAAC
CTTTCAACGCACCACCTTCAATGCACGACGTGGGTTAACTGACCTGCCTC
TCGGCTGCCCCTTTCCTCCTCCGCAGCCTACCAGCAACCCCACCGCACAC
CCTACCAGCAAGCCCACCGCACACCCTACCAGCAAGCCCACCGCACACCC
TACCAGCAAGCCCACCGCCCACCCTACCAGCAGCCCCACTAGGAAGCCTA
CGAGCAAGCCCACGGCGAAGCCTACCGCTAAGCCCACCGCTAAGCCCACC
GCTAAGCCCACGGCGAAGCCTACGAGCAAGCCCACCGCTGAGCCCACGGC
TAAGCCTACCGCTACGCCTACCGCCACCCCCACGGCTACCCCCACCGCTA
AGCCCACCGCTAAGCCCACGGCTAAGCCTACCGCTAAGCCCACGGCTAAG
CCTACCGCTAAGCCCACGGCTAAGCCTACCGCTAAGCCCACCGCTAAGCC
CACCGCTAAGCCCACGGCGAACCCCACGTCGAACCCTACGGCTAACCCTA
CGGCTAACCCCACGTCGAACCCTACTGCTAACCCCACGGCTAACCCCACG
GCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGC
TAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTA
ACCCCACGGCTACCCCTACGGCTAACCCCACGGCTAACCCCACGGCTAAC
CCCACGGCTAACCCCACCGCCCAGGTACGTGTGTATGTATGTCATTTTGA
ACACTCTGTCCAGCTGGTGTTTTGGAAAAGTCCGTGTTTCAAGGGTGCTC
TCGTGCTCGCCGAAGACAAAATGTAACCCTAATTCTAGGCAGCTCGTACT
GCTGACAGCGCCTATCGCAGATGCATGCAGTGCGCCCTTACCCCTGGTTT
GAGGGCCGGAGTGTCTGTGCGTGTGCGTCAGCAGCTTCTGTTGGCGTCAT
CTTGTGCTACACGCGCAGACGCTGTGTGTCAGTCGTGAGCTAGACTATAC
ACCCATAAGCCCTTTCACTTTTGCAAACCGCCAGCGGCTCTCAATCTGGT
GGTGCCTTGTGTAGGCGGCCTCAGTGCTGCATGACAGCGACGCTCGGATT
TGCTGTCATCTTGAAATGTCCCAGCGATTGTGTATGTAGCAGCTCAAAAT
GCGTTCTGCAGCTCATGTGCAAATCGACGATTCTTGACTGCCGCTGACCA
GGCACATGTAGAAGTATGAAATGTCATGACATCATAGATGTGTACATGCA
CGCACCTTGTATCTATACAAGTCACGTATGGGAGTTGGCCAAAAAAAATG
GCTGCTCGTATGCGGCCCTTCAGATCTACATTTTGCATCCTGGACTGTAA
GTAAAGTGGCACGTGGCAAGTGGAAGTTGACACAATGACTGTACAACCCA
GCTGAAACAGAGTTGAGATGTACTGCAATGGTTACCCTTGTCAGTAGACC
CAAGTGGACAGAATTGGGATGTACTGCGATGGTTACTCTTGTCAGCAGAC
CCAAGTGGACATAACCAACTTGATAAAGCAGATGTTCACACTGAGCGTGC
CCCCCAGCATTGTGACCCTCACCACCTCTTGCACCCTGCTTGCTGCTGTC
GGCCCTGCATCCTGCGCCCGATCCAACTACCACCACTACCACCACCTGCG
CGCCCACCCTTCAGCCAACCCTTCAGCCAACACCAGGGTGCATCTCAGCA
GTGGTACGTGTTCCGAACATGCATGCACTTTGCAGTAGTACAGCATATTT
TACAGTAGTATGGTGATAGCAGGATACCGGAGAAGTATACAGTATGTACC
GTAGACAACTGACGGCTTTTCAAAGCGTTTCATGAAAAACAAGTGCACTG
TGTGGCACGACACAGTTGCCAAGGCTGTGGTTGTGCGGCTTTCAAGCCAG
CATCATGCTTCTGCAAAGCGTTTTACGGCAAAGTCTGCATAGCGCTTGCT
CTGAGGAGCAGCACGTGTGTGAGCTGCCGGTGACCTTGAACAAAACGGCA
CTGTTAGTGTACTTTGCTGCAACGATCAGGTGTACAGCGATGCTGATAAT
CATCTGCCATGGGCGTTCGGCTGCTCGCGTGTATGCAGTTTTTCACCGGT
ATGCAGTGAGACCGACCCAGTCTCTTCATCGACCATAGCTATTTTTTTGC
CGTCCGGCAACACATGAAATCGTGTTGCATTCGCGGCAGCCTACAGTGCT
AAAGGGTTACCGTAGGCTCAACCCCTTGAAGTGTGCCAGCTTCAAGGGTG
CATGACAAGTAGGTCTAGGCCCAGCTCTGACTTGAGAACTGCACAGAAAC
CCCTTTGCATATGACACCGCACAGTCGCAGGGAGACGGTGTGCCATCGCT
GTGCTGTCAGATGAGCGTGGTGGCGGGGCTGCTCTTGTCAGAGGGGAGCC
CCGCAAGTCACTGCGAGCCCCGTTCGCGTCGCCTTCCGCTTTGAGATCCC
GCGCTGCTTCACAACACATAGCGATTGAGCCCGGCCACGCGGCATGTCCC
AACCGGCAGTGTCGTGACGACTCCGCTCAAGAGGAGGTGCCGCAGAGTTG
AACTGCTGCAAATGCACACTACCCGTACTTGAAGTATGTTCACACACTCA
TCCACTCATGCGCTCAACCCTATTCACTCATCAACCCCCCCCCTCCCTGC
TTCGCGTGCCGCCAGCCTTGCACGGTCATCGTCAGCGGCACCACCTTCTC
CGGCAACTGCTACAAACCCGCGGACGCGCCCGCCAACCAGAACCTGCTGG
ACGCAGGCGTCGGCACCTGCACGGACACCACTGACTGTGCGCAGCGCTGC
TTCATCCCCAACGCCAGCACCGGGCTCTGCGGCACCAACACGTGCTCCGG
CGGCGAGATCTGCCGCTGCTACCAGAAGGTCACCGGCGTCACGGGCGCGT
CGTGCAAGCCGGAGGACCTCGTGGGCGTCGCCGAGGGCGCGACCGTCAGC
CAGGGCGGCGGCTGCTCCGAGAACGCGTGCAACGCCATCACCAACACGCA
GGGCACGGGCGCGGGGTGCTGCCCCACGAGCTGCTCGCGCCGCACGTTCG
CCGAGCTGGTCCTCAACTAAGCGCAAGTGGCGGCGACGACGGCAGCCATG
TCCGAGTGCGGCACGGAGAGTAGAGGGAGCGGGCGACGTCATTGGACAGC
GGCCGCCTGCCGCTGCCGCCCATGTGTCGGTTGCTCAGCTGCGGTCGCGC
TGAGCGCTGCCGTGTCGGCGCGCGCG

Coding sequence (CDS) from alignment at Contig_191:46249..53574+

>mRNA_17236 ID=mRNA_17236|Name=jgi.p|Trimin1|35902|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1509bp|location=Sequence derived from alignment at Contig_191:46249..53574+ (Tribonema minus UTEX_B_3156 )
ATGATGAAGCTCCAACTGGCGTTGCTGGTGGCGCTGTCCGTCGTCGCCCT
GGGGGCAGTGGCCGAGGAAGAGCAGGTGGAGCGCGTGCTGTGGGGGTGCC
CAACGGGCACGGCGTGCTCGTACAACTGCGAGGAGCACTGCAACATTGCG
TGCGCCAAGCTCAACGTCCCCTTCAAGAGCAACGCTCAGTGCTCGCGCGT
GAGCGCGAGGCGCCAGCTGGCGGTGGCCCAGACATACAGGACGTGCTCGA
ACCCCGCGCCGGGGGCGCGCGCGCTGCTGGGCGAGGACGCCGACGACCGC
GACCTGGCGGGCGCCCAGAACGACACGGGCCTGTGCTGCTACTGCCACCG
CGCGCCGACGCCGGCGCCCACGCGGAAGCCGACGCAGAAGCCGACCACGC
GAAAGCCCACCCAGAAGCCTACCAGCAACCCCACCGCACACCCTACCAGC
AAGCCCACCGCACACCCTACCAGCAAGCCCACCGCACACCCTACCAGCAA
GCCCACCGCCCACCCTACCAGCAGCCCCACTAGGAAGCCTACGAGCAAGC
CCACGGCGAAGCCTACCGCTAAGCCCACCGCTAAGCCCACCGCTAAGCCC
ACGGCGAAGCCTACGAGCAAGCCCACCGCTGAGCCCACGGCTAAGCCTAC
CGCTACGCCTACCGCCACCCCCACGGCTACCCCCACCGCTAAGCCCACCG
CTAAGCCCACGGCTAAGCCTACCGCTAAGCCCACGGCTAAGCCTACCGCT
AAGCCCACGGCTAAGCCTACCGCTAAGCCCACCGCTAAGCCCACCGCTAA
GCCCACGGCGAACCCCACGTCGAACCCTACGGCTAACCCTACGGCTAACC
CCACGTCGAACCCTACTGCTAACCCCACGGCTAACCCCACGGCTAACCCC
ACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCAC
GGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGG
CTACCCCTACGGCTAACCCCACGGCTAACCCCACGGCTAACCCCACGGCT
AACCCCACCGCCCAGCCAACCCTTCAGCCAACACCAGGGTGCATCTCAGC
AGTGCCTTGCACGGTCATCGTCAGCGGCACCACCTTCTCCGGCAACTGCT
ACAAACCCGCGGACGCGCCCGCCAACCAGAACCTGCTGGACGCAGGCGTC
GGCACCTGCACGGACACCACTGACTGTGCGCAGCGCTGCTTCATCCCCAA
CGCCAGCACCGGGCTCTGCGGCACCAACACGTGCTCCGGCGGCGAGATCT
GCCGCTGCTACCAGAAGGTCACCGGCGTCACGGGCGCGTCGTGCAAGCCG
GAGGACCTCGTGGGCGTCGCCGAGGGCGCGACCGTCAGCCAGGGCGGCGG
CTGCTCCGAGAACGCGTGCAACGCCATCACCAACACGCAGGGCACGGGCG
CGGGGTGCTGCCCCACGAGCTGCTCGCGCCGCACGTTCGCCGAGCTGGTC
CTCAACTAA