mRNA_17165 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A836CHJ2_9STRA (UbiA prenyltransferase family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ2_9STRA) HSP 1 Score: 568 bits (1464), Expect = 6.260e-202 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 2
Query: 290 MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV 1156
MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV
Sbjct: 1 MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYSPAV 289
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S2UT65_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT65_9STRA) HSP 1 Score: 229 bits (584), Expect = 1.260e-68 Identity = 127/286 (44.41%), Postives = 181/286 (63.29%), Query Frame = 2
Query: 305 YIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAP----DRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSM-QYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGVYYS 1147
Y VA+RPW+FT V+ + +T+AL + G L + L + + I QAA NL NS +D+ YGVDN + GDR LV+KKI+ GAL+ + +L + + +P L + +VFL +ALA YTA P+ LKY +GD IF+ FGPL M A+++TG+ Q+ ++ Y LPV LLTEAILHANNTRDIK D++ G T+A ++GYQ S L M+ GAY++A ++ + G + LS+P+AL L+ SP + NMDE+ AQLHLLF +LL +G+ S
Sbjct: 7 YTVASRPWTFTASVIPIAVTAALCKKELGAELFSMNLLSALIVGIGCQAASNLTNSYYDFKYGVDNKFSSGDRSLVEKKISPSGALVSSSLLYLVVTMVALPHLWQSIARGGSEVAWVFLPGMALAYFYTAGPYNLKYHCLGDLAIFLAFGPLLMQFTALLLTGSVQWQLMSYTLPVGLLTEAILHANNTRDIKTDSKAGANTLATVMGYQVSVVLLAVMIIGAYVAAAWITWAESCGAGITFLSLPVALMILKDLSPKKLVNMDERCAQLHLLFGVLLTLGISIS 292
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: D7FHN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN3_ECTSI) HSP 1 Score: 222 bits (566), Expect = 4.910e-66 Identity = 121/282 (42.91%), Postives = 177/282 (62.77%), Query Frame = 2
Query: 308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIP-----KLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYV-GCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVG 1135
+ ATRPWS+T ++ VLLT ALVH G+ + G + + I LQA+GNL+NS D+ YGVD T GDR +VD ++ +GAL+ A V+ A V+P ++ R+ F +A+ SYT PF+LKYR +GD +F+ FGP+ M AA+++ G+ Q+WVLP+ +P LL EAILHANN RDI++D GI T+A +G++ S+ LY+ ++ AY+ A L+ G L L++PLA+S L+ P + N+DEKTA+LHLLF +L+ G
Sbjct: 7 LTATRPWSWTAGIIPVLLTGALVHKAEGVSVAKGGLSNALMMVITLQASGNLVNSYIDHNYGVDTIETAGDRTIVDAHVSPKGALVLAGVMFFAAVAAVLPTISRMRVSGQARELEATFWVGVAMVFSYTCWPFRLKYRGLGDITVFLLFGPMLMQVAAMLVCGSVQHWVLPFGVPAALLCEAILHANNMRDIEQDRSAGISTLA--IGFRSSQVLYFGLLGMAYVVAGCLAATGSRGSALSFLTLPLAISALKDCRPEAVRNLDEKTAKLHLLFGVLMTAG 286
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A6H5JLI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLI1_9PHAE) HSP 1 Score: 224 bits (570), Expect = 1.770e-65 Identity = 120/282 (42.55%), Postives = 176/282 (62.41%), Query Frame = 2
Query: 308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLL-----APDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTL-SMQYVGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVG 1135
+ ATRPWS+T V+ VLLT LVH G+ ++ G + + + LQA+GNL+NS D+ YGVD T GDR +VD ++ +GAL+ A V+ A V+P + R+ F +A+ SYT PF+LKYR +GD +F+ FGP+ M AA+++ G+ Q+WVLP+ +P LL EAILHANN RDI++D GI T+A +G++ S+ LY++++ AY+ A L S G L L++PLA+S L+ P + +DEKTA+LHLLF +L+ G
Sbjct: 96 LTATRPWSWTAGVIPVLLTGTLVHKAEGVSMVKGGLSNALMMVVTLQASGNLVNSYVDHNYGVDTIETAGDRTIVDAHVSPKGALVLAGVMFFAAVAAVLPTISRMRASGQARELEATFWVGVAMVFSYTCWPFRLKYRGLGDITVFLLFGPMLMQVAAMLICGSVQHWVLPFGVPAALLCEAILHANNMRDIEQDRSAGISTLATAIGFRSSQVLYFSLLGMAYVVAGCLASTGNRGSALSFLTLPLAISALKDCRPEAVRKLDEKTAKLHLLFGVLMTAG 377
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S4DAV0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAV0_HETAK) HSP 1 Score: 217 bits (552), Expect = 8.830e-64 Identity = 122/280 (43.57%), Postives = 171/280 (61.07%), Query Frame = 2
Query: 308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQY-VGCCLVLLSVPLALSTLRSFSP--PTMANMDEKTAQLHLLFSLLLNVGV 1138
I+A RPWS+T V+ ++LT L+ + G+ LL+ + + + +QAA NL NS D+ GVD T GDR +VD IT A+L +++ L P L+ ++F A + L+ YTA PF LKY +GD IF+ FGPL M ++++ G + VLPY LPV LLTEAILHANN RDIK D R GI T+A ++G+ ++ LY MV GA+L AL +++ + +GC LVL ++PL + + P P M NMDE+TAQLHLL+ LL GV
Sbjct: 10 IIAARPWSWTAAVVPIILTGVLLKKESGISLLSYDFGAALAIGVLVQAAANLTNSYLDWKKGVDKKETAGDRAIVDGLITPVNAILVSIICYGISILLAFPYLVKHGASVKWIFAAGMLLSFFYTANPFSLKYLCLGDVAIFLAFGPLLMGFTSVLLAGDLRTSVLPYTLPVGLLTEAILHANNMRDIKSDTRAGIYTLASVVGFGPAKVLYAFMVFGAFLVALAMAVTHSLGCALVLPALPLGVRNIADLQPHSPKMKNMDERTAQLHLLYGALLIAGV 289
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S0SXL2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXL2_9STRA) HSP 1 Score: 187 bits (474), Expect = 2.570e-52 Identity = 104/280 (37.14%), Postives = 170/280 (60.71%), Query Frame = 2
Query: 305 YIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFL-YVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYV-GCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGV 1138
Y++ATRPWSFT ++ +++T+A+ L + + M + I +QA NL N+ FD+ GVD+ G++ LV++K++ L+ +L+ +G + ++P L+ L +F+ +ALA YTA P LKY+A+GD IF+CFGPL M +I++ G+ + Y++PV LLTE ILH NN RDIK D+ G T+A ++G S ++ A++ G+YLS + + + Y GC L ++PLALS + + M ++ +TAQLHL F ++L +G+
Sbjct: 10 YVLATRPWSFTAAIVPIIITAAVCKKS----LFSIEFIRAMCMGITIQAGANLTNTYFDFINGVDSKIN-GEKTLVERKVSCTEVLVLSLICYLSGLFCILPYLITSKNLSLPVIFMVGVALAYFYTANPIGLKYKALGDVTIFLCFGPLLMQCTSILLVGSTTDDLYLYSIPVGLLTEEILHVNNARDIKADSLSGAITLATIVGPDISYLIFLALLIGSYLSIIIIGLIYHWGCLAALFTIPLALSLDKHYREGKMVDLPAETAQLHLPFGIILALGI 284
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A482SRC3_9ARCH (Prenyltransferase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRC3_9ARCH) HSP 1 Score: 181 bits (460), Expect = 2.650e-50 Identity = 105/278 (37.77%), Postives = 160/278 (57.55%), Query Frame = 2
Query: 311 VATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYV-FLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQY-VGCCLVLLSVPLALSTLRSFSPPTMANMDEKTAQLHLLFSLLLNVGV 1138
VATRPWSFT V+ VL+T+A+ P R + + + + A NL N+ FD+ G D D LVDK+++ LL ++V T G + ++P L + + + F++ + LA YT P LKY A+GD IF+CFGPL M +AI+MT Y + Y +P+ LLTE+ILHANN RDIK D G T+A ++G S + ++ GAYLS L ++ + GC L LL++PL L ++ F + ++ ++ ++LHL F +L+ VG+
Sbjct: 10 VATRPWSFTTTVIPVLVTAAVTGVSFFTPEFARA----LAMGLFVHAGANLTNTYFDFINGFDTKQHNSDPTLVDKRLSPVTILLMSIVCYTIGIFSILPLLFSRSYHDIIIPFVSGLVLAFFYTGNPVGLKYIALGDITIFLCFGPLLMQVSAIIMTQKMSYEMYIYTIPIGLLTESILHANNARDIKNDTANGAITLASIMGLTMSYNFFIFLIVGAYLSVLGIAAYFHYGCLLSLLTLPLGLDLIKKFRDQQLKDLSKEVSKLHLPFGVLMLVGI 283
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7S3Y1J0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1J0_HETAK) HSP 1 Score: 178 bits (452), Expect = 8.890e-50 Identity = 97/224 (43.30%), Postives = 135/224 (60.27%), Query Frame = 2
Query: 308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSAL 979
I+A RPWS+T V+ ++LT L+ + G+ LL+ + + + +QAA NL NS D+ GVD T GDR +VD IT A+L +++ L P L+ ++F A + L+ YTA PF LKY +GD IF+ FGPL M ++++ G + VLPY LPV LLTEAILHANN RDIK D R GI T+A ++G+ ++ LY MV GA+L AL
Sbjct: 10 IIAARPWSWTAAVVPIILTGVLLKKESGISLLSYDFGAALAIGVLVQAAANLTNSYLDWKKGVDKKETAGDRAIVDGLITPVNAILVSIICYGISILLAFPYLVKHGASVKWIFAAGMLLSFFYTANPFSLKYLCLGDVAIFLAFGPLLMGFTSVLLAGDLRTSVLPYTLPVGLLTEAILHANNMRDIKSDTRAGIYTLASVVGFGPAKVLYAFMVFGAFLVAL 233
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: L1J8P6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J8P6_GUITC) HSP 1 Score: 167 bits (424), Expect = 6.240e-45 Identity = 108/296 (36.49%), Postives = 169/296 (57.09%), Query Frame = 2
Query: 308 IVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCICLQAAGNLLNSVFDYTYGVDNPATIGDRC-----------LVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTM--TGAAIVMTGAPQYW--VLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSM--QYVGCCLVLLSVPLALSTLRSFSPPT--MANMDEKTAQLHLLFSLLLNVGV 1138
+VA RPW+F ++ VLLT LVH + G+ + + L + +QAA N++N+ +DY GVD P +G LV + R L ALVL + +++P+ + + ++L +L+ YTAPPFKLKY A+GDA IFI FGPL + T + W V Y +P + + E ILHANN+RDI ED++ G+ T+A +LG+ S+ +Y ++ AY++ + +S+ + +G +VLLS+PLA + F+ MA++ ++TA+LH+ F LLL VGV
Sbjct: 5 VVAMRPWTFPAALVPVLLTVTLVH-RSGVAWSLPEMIRAILLGVIVQAASNVINTYWDYENGVDGP-NVGSGADPSVVLPHKVVLVGGGLKPRSVLALALVLYGSSLLVLLPRF-SDGYRIPLLYLCGTSLSYFYTAPPFKLKYFALGDAAIFIAFGPLLVYCTILLVAPKSVDALWGEVFGYTIPCSFICECILHANNSRDIGEDSKAGLVTLATILGFNGSKRVYVGLITAAYVTVIIMSVGQRRLGMMMVLLSLPLAFDVISRFTHDINRMADLPKRTAKLHMAFGLLLIVGV 297
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Match: A0A7C3J0R6_9BACT (1,4-dihydroxy-2-naphthoate octaprenyltransferase n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C3J0R6_9BACT) HSP 1 Score: 151 bits (382), Expect = 1.040e-38 Identity = 109/294 (37.07%), Postives = 161/294 (54.76%), Query Frame = 2
Query: 305 YIVATRPWSFTVPVMGVLLTS--ALVHAQHGMPLLNRGCLEVMTLCICLQAAG-NLLNSVFDYTYGVDNPATIGD-RCLVDKKITVRGALLFALVLATAGSWLVIPKLLAPDRQFLYVFLASIALAVSYTAPPFKLKYRAMGDAVIFICFGPLTMTGAAIVMTGAPQYWVLPYALPVTLLTEAILHANNTRDIKEDARCGIKTVAMLLGYQRSRTLYYAMVAGAYLSALTLSMQYV---GCCLVLLSVPLALSTLRSFS------PPTMANMDEKTAQLHLLFSLLLNVGVYYS 1147
+I A RP++++ V+ V+L + AL + G N V+ +C L G NL++ FDY VD P T G R LV+ + + L ++ G L + + L + L + YTA PF+ KY A+GD +IFI FGPL + GA + +TG Y VL ++PV L AILHANNTRD+K D R IKT+AML+G + ++ YY ++ GA+LS + L + + LV LS+P AL ++ S P ++A +D TAQ H++F LLL+VG+ S
Sbjct: 18 WIQAFRPFAYSASVIPVILAAMLALTYNSEGT---NWFLFPVILICAVLFHTGANLVSEYFDYKNQVDKPDTFGSSRVLVEGLLLPKQVLNAGIIAFALGFILGLILVYFRGTDILILGLIGLIGGFFYTAKPFQFKYIALGDLLIFILFGPLLVLGAYLGLTGDLNYSVLLVSIPVGFLVVAILHANNTRDMKFDRRAKIKTLAMLIGLKGAKFEYYFLIFGAFLSVIILILFNIISPWSLLVFLSLPPALKNVKIISNVDAENPSSIAMLDVLTAQHHMIFGLLLSVGILIS 308 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353867 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17165 ID=mRNA_17165|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1336bp|location=Sequence derived from alignment at Contig_190:201582..202917- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CCGAGAAAGAGCGGGAGGAGGACATCCACCAGTTGAGTCGAAGCAACGCTback to top protein sequence of jgi.p|Trimin1|353867 >Trimin1|353867|estExt_Genemark1.C_Ctg_1900029 ID=Trimin1|353867|estExt_Genemark1.C_Ctg_1900029|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=290bp MSPVNYIVATRPWSFTVPVMGVLLTSALVHAQHGMPLLNRGCLEVMTLCIback to top mRNA from alignment at Contig_190:201582..202917- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17165 ID=mRNA_17165|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1336bp|location=Sequence derived from alignment at Contig_190:201582..202917- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_190:201582..202917- >mRNA_17165 ID=mRNA_17165|Name=jgi.p|Trimin1|353867|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=870bp|location=Sequence derived from alignment at Contig_190:201582..202917- (Tribonema minus UTEX_B_3156 )back to top |