mRNA_5455 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A836CI33_9STRA (PDZ_6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI33_9STRA) HSP 1 Score: 279 bits (714), Expect = 4.050e-92 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 2 Query: 71 MAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 MAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL Sbjct: 1 MAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 176
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A7S2WPH7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPH7_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.250e-23 Identity = 71/209 (33.97%), Postives = 103/209 (49.28%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPG--PAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTT----APFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL*ALLP 613 D++ +RH+RHRLAC++TDH +M ++E +LH+LHA EP P P + S +Q S SG + + QL ++ APFAR+ V SP++L G+ GD L+ FG VTA NH L L V V + + V+R G + LR+TP W G+G+LGCH LP +++P Sbjct: 72 DVYNVRHKRHRLACLRTDHSTVMREIERSLHALHAATTGGVGGTEEPLDIPGPHGEAEIGSGRNQASRGSNTAPE--------------------VSGTASSSPQLRQSSPAFIAPFARIGEVTGGSPSSLGGIREGDELLEFGTVTAHNHRDLHGLADFVAGHVGQEVHVVVRRQGVVK--ELRITPARWTGRGVLGCHFLPAPSVVP 258
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A8C2UCZ0_COTJA (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Coturnix japonica TaxID=93934 RepID=A0A8C2UCZ0_COTJA) HSP 1 Score: 103 bits (256), Expect = 4.100e-23 Identity = 73/198 (36.87%), Postives = 98/198 (49.49%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH +AC+Q DHKALM Q+E ALH LHA E K A+ R+ EA +Q L PT FA+VN V PESPA+++GL D +V FG V A+N L + + V+ S PL++ V R+G + L LTP+ WAG+GLLGC+I PL Sbjct: 42 DLYQVRTARHNIACLQNDHKALMKQVEEALHQLHAREKEK---------------HARDEAEARA--------------------------------EAMSQNL-PTA--FAKVNVVTPESPASIAGLQVDDEIVEFGSVNANNFKSLQNIATVVQHSEGRPLSVTVIRNGKQ--VHLGLTPKRWAGKGLLGCNITPL 187
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A669PV29_PHACC (PDZ domain-containing protein n=9 Tax=Phasianidae TaxID=9005 RepID=A0A669PV29_PHACC) HSP 1 Score: 103 bits (256), Expect = 6.380e-23 Identity = 72/198 (36.36%), Postives = 95/198 (47.98%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH +AC+Q DHKALM Q+E ALH LHA E K A+ R+ EA +Q L P FA+VN V PESPA+ SGL D +V FG V N L + + V+ S PL++ V R+G + L LTP+ WAG+GLLGC+I+PL Sbjct: 60 DLYQVRTARHSIACLQNDHKALMKQVEEALHQLHAREKEK---------------HARDEAEARA--------------------------------EAMSQSLPPA---FAKVNAVTPESPASTSGLQVDDEIVEFGSVNVHNFKSLQNIATVVQHSEGRPLSVTVIRNGKK--VHLGLTPKRWAGKGLLGCNIIPL 205
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: F1NVH4_CHICK (PDZ domain-containing protein n=4 Tax=Galliformes TaxID=8976 RepID=F1NVH4_CHICK) HSP 1 Score: 103 bits (256), Expect = 6.380e-23 Identity = 72/198 (36.36%), Postives = 95/198 (47.98%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH +AC+Q DHKALM Q+E ALH LHA E K A+ R+ EA +Q L P FA+VN V PESPA+ SGL D +V FG V N L + + V+ S PL++ V R+G + L LTP+ WAG+GLLGC+I+PL Sbjct: 60 DLYQVRAARHSIACLQNDHKALMKQVEEALHQLHAREKEK---------------HARDEAEARA--------------------------------EAMSQSLPPA---FAKVNAVTPESPASTSGLQVDDEIVEFGSVNVHNFKSLQNIATVVQHSEGRPLSVTVIRNGKK--VHLGLTPKRWAGKGLLGCNIIPL 205
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A7K9TBB2_9AVES (26S proteasome non-ATPase regulatory subunit 9 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K9TBB2_9AVES) HSP 1 Score: 103 bits (256), Expect = 6.690e-23 Identity = 74/198 (37.37%), Postives = 94/198 (47.47%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH + C+Q DHKALM Q+E ALH LHA E K A + A A+A S + Q FARVN V P SPA++SGL D +V FG V A+N L + S V+ S PL++ V R G + L LTPR WAG+GLLGC+ILPL Sbjct: 60 DLYQVRTARHNIICLQNDHKALMKQVEEALHQLHAREKEKH--AKDEAEALAEAMSQNQSLPQA----------------------------------------------FARVNAVTPGSPASISGLQVDDEIVEFGSVNANNFQNLQNIASVVQHSEGRPLSVTVLRSGKK--VHLGLTPRRWAGKGLLGCNILPL 207
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A7L1NPW7_RHICY (26S proteasome non-ATPase regulatory subunit 9 (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1NPW7_RHICY) HSP 1 Score: 102 bits (254), Expect = 1.310e-22 Identity = 73/198 (36.87%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH +AC+Q DHKALM Q+E ALH LHA E K + A+AR+ + DQ P A FARVNTV P SPA++SGL D +V FG V N L + + V+ S PL++ V R G + L LTP+ WAG+GLLGC+I+PL Sbjct: 60 DLYQVRTARHNIACLQNDHKALMKQVEEALHQLHAREKEKQAKDE------AEARAEAMSQDQNL-------------------------PQA-----------------FARVNTVTPGSPASISGLQVDDEIVEFGSVNVKNFQSLQNIATVVQHSEGRPLSVTVIRGGKK--VHLGLTPKRWAGRGLLGCNIVPL 207
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A803VK46_FICAL (26S proteasome non-ATPase regulatory subunit 9 n=11 Tax=Passeriformes TaxID=9126 RepID=A0A803VK46_FICAL) HSP 1 Score: 101 bits (251), Expect = 3.560e-22 Identity = 71/198 (35.86%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH + C+Q DHKALM Q+E ALH LHA E K D+ A EA Q +P A FA+VN V+P SPA+LSGL D +V FG V A+N L + + V+ S PL++ V R G + + + LTP+ WAG+GLLGC+I+PL Sbjct: 60 DVYQVRTARHNIICLQNDHKALMKQVEEALHKLHAREKEK------------------HAKDEAEAMA-----------------------------EAMGQSQSPARA-FAKVNAVSPGSPASLSGLQVDDEIVEFGSVNANNFQNLQNIATVVQHSEGRPLSVTVIRGG--RRVHVGLTPKRWAGKGLLGCNIIPL 207
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A851NV18_9GALL (26S proteasome non-ATPase regulatory subunit 9 (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851NV18_9GALL) HSP 1 Score: 100 bits (249), Expect = 6.940e-22 Identity = 70/198 (35.35%), Postives = 97/198 (48.99%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH +AC+Q DHKALM ++E ALH LHA + K A + A A+A S +Q L P FARVN V PESPA+ SGL GD +V FG V N + + + V+ S PL++ V R+G + + +TP+ WAG+GLLGC+I+PL Sbjct: 60 DLYQVRTARHNIACLQNDHKALMKEVEEALHQLHARDKEKH--ARDEAEARAEAMS-------------------------------------------HSQSLPPA---FARVNAVTPESPASTSGLQVGDEIVEFGSVNVHNFKNMQNIATVVQHSEGRPLSVTVIRNGKQ--VHMGVTPKRWAGKGLLGCNIIPL 207
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Match: A0A6J0H6F4_9PASS (26S proteasome non-ATPase regulatory subunit 9 n=58 Tax=Neognathae TaxID=8825 RepID=A0A6J0H6F4_9PASS) HSP 1 Score: 100 bits (248), Expect = 9.690e-22 Identity = 71/198 (35.86%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 5 DIFTIRHQRHRLACIQTDHKALMAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAXXXXXXXXXXXXXXXXXXXXXXXPPVAASGREADAQQLAPTTAPFARVNTVAPESPAALSGLLPGDRLVAFGRVTASNHNGLSALVSAVRDSVNAPLTLWVQRDGSAQLLALRLTPRAWAGQGLLGCHILPL 598 D++ +R RH + C+Q DHKALM Q+E ALH LHA E K A + A A+A S + Q PFARVN V P SPA++SGL D +V FG V A+N L + + V+ S PL++ V R G + + + LTP+ WAG+GLLGC+I+PL Sbjct: 60 DLYQVRTARHNIICLQNDHKALMKQVEEALHQLHAREKEKQ--ARDEAEALAEAMSQNQSLPQ----------------------------------------------PFARVNAVTPGSPASVSGLQVDDEIVEFGSVNANNFQNLQNVATVVQHSEGRPLSVTVIRGG--RRVHVGLTPKRWAGKGLLGCNIIPL 207 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|34996 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_5455 ID=mRNA_5455|Name=jgi.p|Trimin1|34996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=875bp|location=Sequence derived from alignment at Contig_19:76241..79306- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTATGATATATTTACCATCAGGCACCAGCGCCACCGGCTCGCGTGCATACback to top protein sequence of jgi.p|Trimin1|34996 >Trimin1|34996|CE34995_60 ID=Trimin1|34996|CE34995_60|Name=jgi.p|Trimin1|34996|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp MAQLEAALHSLHAIELSKASVAPEPGPAPADARSVLSTADQRSAAAAAAAback to top mRNA from alignment at Contig_19:76241..79306- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_5455 ID=mRNA_5455|Name=jgi.p|Trimin1|34996|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3066bp|location=Sequence derived from alignment at Contig_19:76241..79306- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_19:76241..79306- >mRNA_5455 ID=mRNA_5455|Name=jgi.p|Trimin1|34996|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_19:76241..79306- (Tribonema minus UTEX_B_3156 )back to top |