mRNA_17887 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353850
Unique NamemRNA_17887
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353850 vs. uniprot
Match: A0A835Z5T6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T6_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.480e-48
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 2 
Query:   62 MTGKRDWPELIGQSADAAKETILRELKAEGCADATVVIRDAMSDDPDAPVPTPRMYNPQLIWAFCNPDTSKFVKA 286
            MTGKRDWPELIGQSADAAKETILRELKAEGCADATVVIRDAMSDDPDAPVPTPRMYNPQLIWAFCNPDTSKFVKA
Sbjct:    1 MTGKRDWPELIGQSADAAKETILRELKAEGCADATVVIRDAMSDDPDAPVPTPRMYNPQLIWAFCNPDTSKFVKA 75
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BLAST of jgi.p|Trimin1|353850 vs. uniprot
Match: A0A835Z4A5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.190e-27
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 2 
Query:   41 STSCCLKMTG---KRDWPELIGQSADAAKETILRELKAEGCADATVVIRDAMSDDPDAPVPTPRMYNPQLIWAFCNPDTSKFVKA 286
            +TSC   +     KR+WPEL GQ  +AAK TI +ELKA GC    V IRDA SDDP+AP+P P +YNP ++WAFCN DT KFVKA
Sbjct:    6 ATSCHFNLNMSDVKREWPELFGQDIEAAKATIEKELKAAGCDAPIVEIRDAFSDDPNAPIPVPLIYNPNMVWAFCNADTKKFVKA 90
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353850 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835Z5T6_9STRA4.480e-48100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4A5_9STRA4.190e-2758.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_188contigContig_188:172748..173932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353850|estExt_Genemark1.C_Ctg_1880013
Hectar predicted targeting categoryother localisation
TranscriptId354172
TrackFilteredModels1
ProteinId353850
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353850gene_17887Tribonema minus UTEX_B_3156 geneContig_188 172748..173932 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17887_1exon_17887_1Tribonema minus UTEX_B_3156 exonContig_188 172748..172795 +
exon_17887_2exon_17887_2Tribonema minus UTEX_B_3156 exonContig_188 173695..173932 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17887UTR5_17887Tribonema minus UTEX_B_3156 five_prime_UTRContig_188 172748..172795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17887CDS_17887Tribonema minus UTEX_B_3156 CDSContig_188 173708..173932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353850Trimin1|353850|estExt_Genemark1.C_Ctg_1880013Tribonema minus UTEX_B_3156 polypeptideContig_188 173708..173932 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17887 ID=mRNA_17887|Name=jgi.p|Trimin1|353850|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=286bp|location=Sequence derived from alignment at Contig_188:172748..173932+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCGCCTGGTGGTCTTCTTGTCGGCTCACTTCTGGCACTTTCAACGAGCT
GCTGTTTGAAAATGACTGGGAAGCGCGACTGGCCCGAGCTTATCGGTCAG
AGCGCCGACGCCGCAAAAGAGACCATCCTGAGGGAGCTGAAGGCGGAGGG
CTGCGCTGACGCGACCGTTGTGATAAGGGATGCAATGTCTGATGACCCAG
ACGCCCCCGTTCCCACGCCGCGCATGTACAACCCCCAGCTAATCTGGGCG
TTCTGCAACCCGGACACCAGCAAGTTTGTGAAGGCC
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protein sequence of jgi.p|Trimin1|353850

>Trimin1|353850|estExt_Genemark1.C_Ctg_1880013 ID=Trimin1|353850|estExt_Genemark1.C_Ctg_1880013|Name=jgi.p|Trimin1|353850|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=75bp
MTGKRDWPELIGQSADAAKETILRELKAEGCADATVVIRDAMSDDPDAPV
PTPRMYNPQLIWAFCNPDTSKFVKA
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mRNA from alignment at Contig_188:172748..173932+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17887 ID=mRNA_17887|Name=jgi.p|Trimin1|353850|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1185bp|location=Sequence derived from alignment at Contig_188:172748..173932+ (Tribonema minus UTEX_B_3156 )
CTCGCCTGGTGGTCTTCTTGTCGGCTCACTTCTGGCACTTTCAACGAGGT
GAGATATCTTTTCGATACATGACACGTGATGCTACTGCGGCTACCTCCTC
ACAGCAGCGCGCGCAGTCGCTCGATCATCCAGGTTGTGCCAGCCCAGGAG
TAATCCGCCGCAAAGCAACCCCTGCAATCAGATCAAAGTCAGGAGTTGAG
AGTCTTGCGCATGCGATATCAACGAGAGCTGTCGGCTGCTGCTTGCGGCT
GCGTGATTCGAGATGTGCGCTCGCTATCTTCAGCTTTTCCCAGTGCCAGT
GACTGCAATGTGCTCAATGACATGCAATCTTCCCAGCTACGAAGGTGCAG
GCCCCGGCAGGCTTACATGTTCATCGTGATATGCAGTGTGGCCGCGACCA
AGTGCAGCAATTAGGTGTCCATGTATCAACAATTGGTGATCACCTTCACT
CAGGTCTGTTTTGATCTACCTACAGCCCTTACATGCGCATGCCCCGCCCC
CGCGCCCTAGATCCACTGGAGGAGCCTGAACCTCAGAGTATAGCTAGAGG
GCACGTACAGTCAGTGCTAGCCTTCAGCTTGTTGGTAGAAACCTTCATGT
GTCCGAAGTGTATGTGAATGTGAACGGTGCCTGGACGCACTGCCAGTCAC
CAAATCTGGCTGCAGATTATATTCGATGGTGAACTGTTCCCATCACCTGG
GTTGTCCCCAGCGCTTCTTTCCAAACTTCATCAATGAATTTATGTTAAAT
TTCATGCTTATAAATATATATGCCCACCTTGCACGTCGTATCTGCTCGAT
TCCCCGCCCGCATTCATCAATGAATTCATGCTGAGCTTTGTGAGCGCATG
CTCCCATTGCACGTGGTCTCTGCTCGCCCCCTCCCCCCCGCATCGCTGCC
GTCCTTGCTGGTCCCTCCGCTCTCACCCCATCGGCAATGGCAATCAGCTG
CTGTTTGAAAATGACTGGGAAGCGCGACTGGCCCGAGCTTATCGGTCAGA
GCGCCGACGCCGCAAAAGAGACCATCCTGAGGGAGCTGAAGGCGGAGGGC
TGCGCTGACGCGACCGTTGTGATAAGGGATGCAATGTCTGATGACCCAGA
CGCCCCCGTTCCCACGCCGCGCATGTACAACCCCCAGCTAATCTGGGCGT
TCTGCAACCCGGACACCAGCAAGTTTGTGAAGGCC
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Coding sequence (CDS) from alignment at Contig_188:172748..173932+

>mRNA_17887 ID=mRNA_17887|Name=jgi.p|Trimin1|353850|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=225bp|location=Sequence derived from alignment at Contig_188:172748..173932+ (Tribonema minus UTEX_B_3156 )
ATGACTGGGAAGCGCGACTGGCCCGAGCTTATCGGTCAGAGCGCCGACGC
CGCAAAAGAGACCATCCTGAGGGAGCTGAAGGCGGAGGGCTGCGCTGACG
CGACCGTTGTGATAAGGGATGCAATGTCTGATGACCCAGACGCCCCCGTT
CCCACGCCGCGCATGTACAACCCCCAGCTAATCTGGGCGTTCTGCAACCC
GGACACCAGCAAGTTTGTGAAGGCC
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