Trimin1|353816|estExt_Genemark1.C_Ctg_1850037 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353816
Unique Name	Trimin1\|353816\|estExt_Genemark1.C_Ctg_1850037
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	275

Homology

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BLAST of jgi.p|Trimin1|353816 vs. uniprot
Match: A0A835Z3T5_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T5_9STRA)

HSP 1 Score: 353 bits (906), Expect = 4.360e-120
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 0

Query:    1 MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEAGQGAVVTKQAEPELLPGWKHTRHAGTGQEFWVHEATKERRRTPPYKA 274
            MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEAGQGAVVTKQAEPELLPGWKHTRHAGTGQEFWVHEATKERRRTPPYKA
Sbjct:    1 MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEAGQGAVVTKQAEPELLPGWKHTRHAGTGQEFWVHEATKERRRTPPYKA 274

[Close]

BLAST of jgi.p|Trimin1|353816 vs. uniprot
Match: A0A7S3MIN1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MIN1_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.810e-6
Identity = 48/135 (35.56%), Postives = 65/135 (48.15%), Query Frame = 0

Query:   19 DKQAAAAKARAKAREYLLSSGEGVSTFHDTAKLLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAXXXXXXXEAARAKRHKQLEDVTPIA---------PGWMAVP-AAGGKTYYWNTATQQTTWERP 143
            +K+A A K R +A  +L   G+ V     T      GV    ++A KGG DNTL+ +     +K++A A           AA+        DV P+A         P W  VP A+ G++YYWNTAT  TTWERP
Sbjct:    6 EKEALALKLRQQALLHLQKEGQAVEKIPLT------GVIAPKKDAGKGG-DNTLDLL-----IKQKATAQIK-------NAAKVTPTVVKSDVPPVAVTSTPSSLPPNWQEVPDASTGRSYYWNTATNATTWERP 121

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353816 vs. uniprot

BLAST of jgi.p|Trimin1|353816 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z3T5_9STRA	4.360e-120	100.00	WW domain-containing protein n=1 Tax=Tribonema min...	[more]
A0A7S3MIN1_9STRA	4.810e-6	35.56	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001202	WW domain	SMART	SM00456	ww_5	coord: 240..273 e-value: 13.0 score: 6.7 coord: 113..145 e-value: 3.7E-6 score: 36.4
IPR001202	WW domain	PFAM	PF00397	WW	coord: 116..143 e-value: 8.3E-9 score: 35.4
IPR001202	WW domain	PROSITE	PS01159	WW_DOMAIN_1	coord: 118..143
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 112..145 score: 14.4813
IPR001202	WW domain	CDD	cd00201	WW	coord: 116..144 e-value: 5.44515E-6 score: 40.2038
None	No IPR available	GENE3D	2.20.70.10		coord: 98..147 e-value: 1.4E-10 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..274
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..274
IPR036020	WW domain superfamily	SUPERFAMILY	51045	WW domain	coord: 110..144

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_185	contig	Contig_185:238428..240106 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353816	mRNA_15491	Tribonema minus UTEX_B_3156	mRNA	Contig_185 238423..240106 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353816|estExt_Genemark1.C_Ctg_1850037 ID=Trimin1|353816|estExt_Genemark1.C_Ctg_1850037|Name=jgi.p|Trimin1|353816|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
MSANSKAPPGPKWDPDRADKQAAAAKARAKAREYLLSSGEGVSTFHDTAK
LLGEGVAQRLREATKGGGDNTLEEVQKRAALKRRAEADAAARRAADEEAA
RAKRHKQLEDVTPIAPGWMAVPAAGGKTYYWNTATQQTTWERPEAVDGGG
GGGGGAADAPAAAAAASAAAAGGAAAAPAAAAAPAATKAAAAQAAQGSGG
GAAAAQRGGEAAPAAAAAAAAPAASEAGQGAVVTKQAEPELLPGWKHTRH
AGTGQEFWVHEATKERRRTPPYKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001202	WW_dom
IPR036020	WW_dom_sf