mRNA_15471 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179148
Unique NamemRNA_15471
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|179148 vs. uniprot
Match: A0A835Z5Y8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Y8_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.470e-25
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLTR 168
            MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLTR
Sbjct:    1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLTR 56
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BLAST of jgi.p|Trimin1|179148 vs. uniprot
Match: A0A836CKU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKU4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.040e-23
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 1 
Query:    1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLT 165
            MLRTAIRATDDGFQADALPLVR LAP++RAASLPDDFGALSALTDCDLHGCEYLT
Sbjct:    1 MLRTAIRATDDGFQADALPLVRSLAPSRRAASLPDDFGALSALTDCDLHGCEYLT 55
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BLAST of jgi.p|Trimin1|179148 vs. uniprot
Match: A0A835YQD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQD9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.070e-9
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYL 162
            MLRTAIRATD GFQADAL LV+ L P +R  SLPDD   LSALT  D+  CE L
Sbjct:    1 MLRTAIRATDTGFQADALSLVQSLVPNERVTSLPDDISVLSALTAVDVSSCEKL 54
[Close]
BLAST of jgi.p|Trimin1|179148 vs. uniprot
Match: A0A835ZFG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFG8_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.560e-7
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHGCEYLT 165
            MLRTA+RAT  GFQADAL LV     + R ASLPD+ GALSA+T   L GC+ LT
Sbjct:  161 MLRTAVRATGAGFQADALALVHSFTLSDRVASLPDEVGALSAVTVVVLSGCDRLT 215
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179148 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z5Y8_9STRA2.470e-25100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKU4_9STRA8.040e-2394.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQD9_9STRA3.070e-966.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFG8_9STRA3.560e-761.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_185contigContig_185:118628..119758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179148|e_gw1.185.19.1
Hectar predicted targeting categoryother localisation
TranscriptId179470
TrackFilteredModels1
ProteinId179148
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179148gene_15471Tribonema minus UTEX_B_3156 geneContig_185 118628..119758 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15471_1exon_15471_1Tribonema minus UTEX_B_3156 exonContig_185 118628..119758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15471CDS_15471Tribonema minus UTEX_B_3156 CDSContig_185 118628..119758 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179148Trimin1|179148|e_gw1.185.19.1Tribonema minus UTEX_B_3156 polypeptideContig_185 118628..119758 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15471 ID=mRNA_15471|Name=jgi.p|Trimin1|179148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_185:118628..119758+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCACAGCGATTCGCGCCACAGACGACGGCTTCCAGGCAGATGC
ACTACCGCTTGTACGACCCCTTGCTCCCACCAAAAGAGCAGCAAGCCTGC
CGGACGACTTTGGTGCTCTGTCGGCACTGACAGATTGCGACCTACATGGC
TGTGAGTATCTCACAAGACTGCCGGACTGCATCAGCAATCTGAGCGGGCT
GACCAGGCTTTATGCGAGATACTGCAGTAGGTTACTTAGTCTGCCGGCAT
GCATAGGTAGCCTGCCGGCGTTAGCGACGCTTGACCTGACCCGCTGTTAC
AGTCTTAGTAGCCTGCCTGATAGCATCGGCGGCCTGGCAGCGCTGACGGA
TCTCAACCTGAGCGGCTGCACAATAACCACTAGGCTGCCGGACAGCATCG
GCAATCTGGTTTCACTCAAAAGCCTCAACCTCAGCGCCTGCACATCACTC
TTTGGGCTGCCCGACAGCATCGGTAACCTCGCTTTGTTAACGGCGCTGAA
CATGTGCGACTGCACGGTGTTCTACAATTGTCCGAGCAGCATTGGCAACC
TGGCAGCGCTGGCAAAGCTAGACTTGGGCAACTGCGACACGCTTTCCAGT
CTCCCGGAGAGCATTGGCGGCCTGACCGCGTTAACATGGCTGAACCTAAG
CGGGCTTACGGTCCTGCGTAGGTTGCCAAACAGTATTGGCCATCTGGTAT
CGCTAGCCAAGCTCAATATGATGTGTTGTCGCACTCTCAAGAGTCTGCCG
GAGAGTATCGGCGCCCTTGCAGCGCTGACGTACCTGTGCCTAGCAAAATG
CAAGCGTCTCACCAGTCTGCCGGATTCCATAGGCGCGCTGCGGTCTCTGA
AGGTTCTTGACTTGGCTGAGTGCGAAGCACTGACAGCACTGCCGGACTCC
ATCGGCGACTTGTCGGCACTGTCACAGCTCAGGCTACGCAGCTGCATGCG
CCTGTCGGAACTGCCAGTCTGCCTGGGGGAACTGGCGCAGCTCACATTGC
TAGACTTGTCGTTCTGCAGTCAACTCGCGAGCCTGCCGGACACGCTTGGC
AAGCTGGCACTGTTGACAAAGATACACACAGACGGGTGCCGAGAGCGCCT
GACTCAGTCTGCCAAAGCGCTTCAGCAGTAG
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protein sequence of jgi.p|Trimin1|179148

>Trimin1|179148|e_gw1.185.19.1 ID=Trimin1|179148|e_gw1.185.19.1|Name=jgi.p|Trimin1|179148|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=377bp
MLRTAIRATDDGFQADALPLVRPLAPTKRAASLPDDFGALSALTDCDLHG
CEYLTRLPDCISNLSGLTRLYARYCSRLLSLPACIGSLPALATLDLTRCY
SLSSLPDSIGGLAALTDLNLSGCTITTRLPDSIGNLVSLKSLNLSACTSL
FGLPDSIGNLALLTALNMCDCTVFYNCPSSIGNLAALAKLDLGNCDTLSS
LPESIGGLTALTWLNLSGLTVLRRLPNSIGHLVSLAKLNMMCCRTLKSLP
ESIGALAALTYLCLAKCKRLTSLPDSIGALRSLKVLDLAECEALTALPDS
IGDLSALSQLRLRSCMRLSELPVCLGELAQLTLLDLSFCSQLASLPDTLG
KLALLTKIHTDGCRERLTQSAKALQQ*
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mRNA from alignment at Contig_185:118628..119758+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15471 ID=mRNA_15471|Name=jgi.p|Trimin1|179148|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1131bp|location=Sequence derived from alignment at Contig_185:118628..119758+ (Tribonema minus UTEX_B_3156 )
ATGCTGCGCACAGCGATTCGCGCCACAGACGACGGCTTCCAGGCAGATGC
ACTACCGCTTGTACGACCCCTTGCTCCCACCAAAAGAGCAGCAAGCCTGC
CGGACGACTTTGGTGCTCTGTCGGCACTGACAGATTGCGACCTACATGGC
TGTGAGTATCTCACAAGACTGCCGGACTGCATCAGCAATCTGAGCGGGCT
GACCAGGCTTTATGCGAGATACTGCAGTAGGTTACTTAGTCTGCCGGCAT
GCATAGGTAGCCTGCCGGCGTTAGCGACGCTTGACCTGACCCGCTGTTAC
AGTCTTAGTAGCCTGCCTGATAGCATCGGCGGCCTGGCAGCGCTGACGGA
TCTCAACCTGAGCGGCTGCACAATAACCACTAGGCTGCCGGACAGCATCG
GCAATCTGGTTTCACTCAAAAGCCTCAACCTCAGCGCCTGCACATCACTC
TTTGGGCTGCCCGACAGCATCGGTAACCTCGCTTTGTTAACGGCGCTGAA
CATGTGCGACTGCACGGTGTTCTACAATTGTCCGAGCAGCATTGGCAACC
TGGCAGCGCTGGCAAAGCTAGACTTGGGCAACTGCGACACGCTTTCCAGT
CTCCCGGAGAGCATTGGCGGCCTGACCGCGTTAACATGGCTGAACCTAAG
CGGGCTTACGGTCCTGCGTAGGTTGCCAAACAGTATTGGCCATCTGGTAT
CGCTAGCCAAGCTCAATATGATGTGTTGTCGCACTCTCAAGAGTCTGCCG
GAGAGTATCGGCGCCCTTGCAGCGCTGACGTACCTGTGCCTAGCAAAATG
CAAGCGTCTCACCAGTCTGCCGGATTCCATAGGCGCGCTGCGGTCTCTGA
AGGTTCTTGACTTGGCTGAGTGCGAAGCACTGACAGCACTGCCGGACTCC
ATCGGCGACTTGTCGGCACTGTCACAGCTCAGGCTACGCAGCTGCATGCG
CCTGTCGGAACTGCCAGTCTGCCTGGGGGAACTGGCGCAGCTCACATTGC
TAGACTTGTCGTTCTGCAGTCAACTCGCGAGCCTGCCGGACACGCTTGGC
AAGCTGGCACTGTTGACAAAGATACACACAGACGGGTGCCGAGAGCGCCT
GACTCAGTCTGCCAAAGCGCTTCAGCAGTAG
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Coding sequence (CDS) from alignment at Contig_185:118628..119758+

>mRNA_15471 ID=mRNA_15471|Name=jgi.p|Trimin1|179148|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1131bp|location=Sequence derived from alignment at Contig_185:118628..119758+ (Tribonema minus UTEX_B_3156 )
ATGCTGCGCACAGCGATTCGCGCCACAGACGACGGCTTCCAGGCAGATGC
ACTACCGCTTGTACGACCCCTTGCTCCCACCAAAAGAGCAGCAAGCCTGC
CGGACGACTTTGGTGCTCTGTCGGCACTGACAGATTGCGACCTACATGGC
TGTGAGTATCTCACAAGACTGCCGGACTGCATCAGCAATCTGAGCGGGCT
GACCAGGCTTTATGCGAGATACTGCAGTAGGTTACTTAGTCTGCCGGCAT
GCATAGGTAGCCTGCCGGCGTTAGCGACGCTTGACCTGACCCGCTGTTAC
AGTCTTAGTAGCCTGCCTGATAGCATCGGCGGCCTGGCAGCGCTGACGGA
TCTCAACCTGAGCGGCTGCACAATAACCACTAGGCTGCCGGACAGCATCG
GCAATCTGGTTTCACTCAAAAGCCTCAACCTCAGCGCCTGCACATCACTC
TTTGGGCTGCCCGACAGCATCGGTAACCTCGCTTTGTTAACGGCGCTGAA
CATGTGCGACTGCACGGTGTTCTACAATTGTCCGAGCAGCATTGGCAACC
TGGCAGCGCTGGCAAAGCTAGACTTGGGCAACTGCGACACGCTTTCCAGT
CTCCCGGAGAGCATTGGCGGCCTGACCGCGTTAACATGGCTGAACCTAAG
CGGGCTTACGGTCCTGCGTAGGTTGCCAAACAGTATTGGCCATCTGGTAT
CGCTAGCCAAGCTCAATATGATGTGTTGTCGCACTCTCAAGAGTCTGCCG
GAGAGTATCGGCGCCCTTGCAGCGCTGACGTACCTGTGCCTAGCAAAATG
CAAGCGTCTCACCAGTCTGCCGGATTCCATAGGCGCGCTGCGGTCTCTGA
AGGTTCTTGACTTGGCTGAGTGCGAAGCACTGACAGCACTGCCGGACTCC
ATCGGCGACTTGTCGGCACTGTCACAGCTCAGGCTACGCAGCTGCATGCG
CCTGTCGGAACTGCCAGTCTGCCTGGGGGAACTGGCGCAGCTCACATTGC
TAGACTTGTCGTTCTGCAGTCAACTCGCGAGCCTGCCGGACACGCTTGGC
AAGCTGGCACTGTTGACAAAGATACACACAGACGGGTGCCGAGAGCGCCT
GACTCAGTCTGCCAAAGCGCTTCAGCAGTAG
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