Trimin1|353792|estExt_Genemark1.C_Ctg_1840017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|353792
Unique NameTrimin1|353792|estExt_Genemark1.C_Ctg_1840017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length973
Homology
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A835Z4I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4I4_9STRA)

HSP 1 Score: 1267 bits (3278), Expect = 0.000e+0
Identity = 972/972 (100.00%), Postives = 972/972 (100.00%), Query Frame = 0
Query:    1 MGRPPQQQQWYPGPHLPPAMPQQVQGPTGQIEPEKLFVTVYVGKLADAVEPQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDEFFAKKSPYQLTSHQTRVADARKRILEXXXXXXXXXXXXXXXXXFEAVVAAREGPKVKLEEAAASGGDGAXXXXEAEASGVQPKAEATDAGKSAPAXXXXXXXXKGAEGGAVKGEGDVLVPPPLRRDENGEPEQGMTEEKAAYAFSEAIKFRRLQEERDRRDXXXXXXXXXXXXKASHRAQVEKQRAEEEAKARALKEEAEALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAARDKGGEREGSADGGGDASRRXSSRKXSREGRRHSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERDGGRRRDRDGRGGREGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEAAKIAAAXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXFSLAAKAAKRGSGSSVAGMFGLEGEEERAPSRPVVPIDYDDGGXXXXXXXGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRAAAAPQPAQLLAVGGDRPFLTAVHAVAQATRVLVYAAIKSLISKGLPKTDTRDTAATVRERFALTLSIWAVMTPMQELTQPTTVKSTAAEIMGFRKGSGILSATALGAAVALFDEWESVWGRLAIVPLSAAVRACAYRPYPGIPYADKDHKRNRLLGGLYGWYFAYYCWFVKGSLRPVIEVYSAFGGFGILYLGIRAWTNARCTSGGDVVAVAF 972
            MGRPPQQQQWYPGPHLPPAMPQQVQGPTGQIEPEKLFVTVYVGKLADAVEPQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDEFFAKKSPYQLTSHQTRVADARKRILEXXXXXXXXXXXXXXXXXFEAVVAAREGPKVKLEEAAASGGDGAXXXXEAEASGVQPKAEATDAGKSAPAXXXXXXXXKGAEGGAVKGEGDVLVPPPLRRDENGEPEQGMTEEKAAYAFSEAIKFRRLQEERDRRDXXXXXXXXXXXXKASHRAQVEKQRAEEEAKARALKEEAEALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAARDKGGEREGSADGGGDASRRXSSRKXSREGRRHSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERDGGRRRDRDGRGGREGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEAAKIAAAXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXFSLAAKAAKRGSGSSVAGMFGLEGEEERAPSRPVVPIDYDDGGXXXXXXXGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRAAAAPQPAQLLAVGGDRPFLTAVHAVAQATRVLVYAAIKSLISKGLPKTDTRDTAATVRERFALTLSIWAVMTPMQELTQPTTVKSTAAEIMGFRKGSGILSATALGAAVALFDEWESVWGRLAIVPLSAAVRACAYRPYPGIPYADKDHKRNRLLGGLYGWYFAYYCWFVKGSLRPVIEVYSAFGGFGILYLGIRAWTNARCTSGGDVVAVAF
Sbjct:    1 MGRPPQQQQWYPGPHLPPAMPQQVQGPTGQIEPEKLFVTVYVGKLADAVEPQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLNGQKVMGEELLVKVGKKEQAAIDEFFAKKSPYQLTSHQTRVADARKRILEXXXXXXXXXXXXXXXXXFEAVVAAREGPKVKLEEAAASGGDGAXXXXEAEASGVQPKAEATDAGKSAPAXXXXXXXXKGAEGGAVKGEGDVLVPPPLRRDENGEPEQGMTEEKAAYAFSEAIKFRRLQEERDRRDXXXXXXXXXXXXKASHRAQVEKQRAEEEAKARALKEEAEALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAARDKGGEREGSADGGGDASRRXSSRKXSREGRRHSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSERDGGRRRDRDGRGGREGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEAAKIAAAXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXFSLAAKAAKRGSGSSVAGMFGLEGEEERAPSRPVVPIDYDDGGXXXXXXXGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRAAAAPQPAQLLAVGGDRPFLTAVHAVAQATRVLVYAAIKSLISKGLPKTDTRDTAATVRERFALTLSIWAVMTPMQELTQPTTVKSTAAEIMGFRKGSGILSATALGAAVALFDEWESVWGRLAIVPLSAAVRACAYRPYPGIPYADKDHKRNRLLGGLYGWYFAYYCWFVKGSLRPVIEVYSAFGGFGILYLGIRAWTNARCTSGGDVVAVAF 972          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A7S2CNP4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNP4_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.560e-35
Identity = 72/142 (50.70%), Postives = 94/142 (66.20%), Query Frame = 0
Query:  627 EEERAPSRPVVPIDYDDGGXXXXXXXGG--------RKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRAA 760
            EEE+A  R +V +DYD G                   K+RDK +VD IPKDK  LF++P+ W V+ +H IVA  MRPW+V+KI EYLGEEE TLIDF+  KL+  + P A+LDEL+LVL++DAE F +KMWRML F  ++ A
Sbjct:    1 EEEQA--RKLVKLDYDKGEVVAAAAPARXXXXAGETEKERDKRIVDRIPKDKATLFSFPIHWDVLDAHRIVATNMRPWIVKKIVEYLGEEEKTLIDFIITKLDQHSNPHAILDELKLVLDDDAETFVLKMWRMLAFHGIKLA 140          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A7S2XWQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWQ2_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.290e-33
Identity = 83/187 (44.39%), Postives = 109/187 (58.29%), Query Frame = 0
Query:  607 AKAAKRGSGSSVAGMFGLEGEEERAPSRPVVPIDYDD------------------------------GGXXXXXXXGGRKDRD---KVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRAA 760
            A+  +  SG++ A  FGLE E++    +PV+PIDYDD                                       G  K +    K LVD IPK+K ALFAY ++W +V  H +V +K+RPWV +KI EYLGEEE TLIDF+ ++L  RA PQ++LDEL LVL+EDAE+FTVK+WRML+F  LR A
Sbjct:   58 AQVQQPASGNARA-FFGLEEEKKL---KPVIPIDYDDHEKQAVLPPAAQSVAAAAQRINAMLAAPAPAPVVPAAGLGAAKAKQLQQKDLVDRIPKEKRALFAYKVNWDLVHKHDVVGSKLRPWVSKKITEYLGEEERTLIDFIVSQLMERAHPQSILDELALVLDEDAEIFTVKLWRMLIFHELRIA 240          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A7S3UVP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVP2_HETAK)

HSP 1 Score: 136 bits (342), Expect = 7.080e-33
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = 0
Query:  633 SRPVVPIDYDDGGXXXXXXXGGRKD------------RDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALR 758
            S+P+V +DY +         G   +            + K LVD IPK+K ALFAYP+ W VV  H I+ +K++ W+V+KI E+LGEEE TLIDF+C+KL + A P+++L+EL+LVL++DAE+F VK+WRML+F  L+
Sbjct:   53 SKPIVKLDYTEEEKRAAAPSGPEAEAXXXXXXXXXXEKQKALVDRIPKEKAALFAYPVAWAVVDEHDIIKSKLKAWIVKKIVEFLGEEEETLIDFICSKLISHADPESILEELKLVLDDDAEIFMVKLWRMLIFHVLK 190          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: D7FJT5_ECTSI (Splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJT5_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.860e-31
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 0
Query:  656 KDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRA 759
            K RDK LV  IPKD++ LFAY ++W +V  H I+ +KMRPW+V+KI EYLGEEE TL +FV  KL  RA PQ +LDEL+LVLEEDA VF  KMWRMLVFC LRA
Sbjct:  693 KARDKELVGSIPKDREELFAYEINWQMVEQHNIIQSKMRPWIVKKIIEYLGEEEKTLTEFVLTKLGQRAKPQTILDELKLVLEEDAAVFMTKMWRMLVFCTLRA 796          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A0S7IIW6_9TELE (RBM25 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IIW6_9TELE)

HSP 1 Score: 125 bits (314), Expect = 1.510e-29
Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 0
Query:  617 SVAGMFGLEGEEERAPSRPVVPIDYDDG-------GXXXXXXXGG------RKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVF 754
            SV   F  E  +E+   R +VP+DY D        G       GG      ++   K L++ IP  +  LF+YPLDW +V S  ++  ++RPW+ +KI EY+GEEEPTL+DFVC+K+ A + PQ +LD++ +VL+E+AEVF VKMWR+L++
Sbjct:    1 SVFNKFDDEEADEQPRKRKLVPLDYGDDDKSLGLDGADISAAKGGSINTEEKRKHIKSLIEKIPTARPELFSYPLDWAMVDS-ALMDRRIRPWINKKIIEYIGEEEPTLVDFVCSKIMAHSTPQGILDDVAMVLDEEAEVFIVKMWRLLIY 150          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A183IM48_9BILA (PWI domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IM48_9BILA)

HSP 1 Score: 128 bits (321), Expect = 2.230e-29
Identity = 61/148 (41.22%), Postives = 98/148 (66.22%), Query Frame = 0
Query:  614 SGSSVAGMFGLEGE---EERAPSRPVVPIDYDD----GGXXXXXXXGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVF 754
            S S++  +F  E E   EE APSRP+VP++Y +               +K   K L++ IP  KD LF Y +DW    ++ ++  +++PWVV+KI EY+GEEEP+L+DF+C K++ +A PQ++LD++ +VL+E+A VF VK+WR+L++
Sbjct:   94 SSSNLRKVFNEENEDETEENAPSRPLVPLEYTEEEKRAVEESRLTAEEKKKMIKSLIEKIPTSKDELFKYTIDW----TYNLIEKRLKPWVVKKIVEYIGEEEPSLVDFICQKVDEKASPQSILDDVSMVLDEEASVFVVKLWRLLIY 237          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: UPI0010A32DBF (RNA-binding protein 25-like n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=UPI0010A32DBF)

HSP 1 Score: 124 bits (310), Expect = 1.270e-28
Identity = 63/149 (42.28%), Postives = 91/149 (61.07%), Query Frame = 0
Query:  617 SVAGMFGLEGEEERAPSRPVVPIDYDD-----------GGXXXXXXXGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVF 754
            SV   F  E  +E    R +VP+DYDD           G          ++   K L++ IP  K  LF YPLDW +V S  ++  ++RPW+ +KI EY+GEEE TL+DFVC+K+ A + PQ +LD++ +VL+E+AEVF VKMWR+L++
Sbjct:   34 SVFNRFDDEEADEAPRKRKLVPLDYDDDKSLGADDPGQGSGKSGANTEEKRKHIKSLIEKIPTGKPELFNYPLDWSIVDST-LMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSTPQGILDDVAMVLDEEAEVFIVKMWRLLIY 181          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A8K1C3C9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3C9_PYTOL)

HSP 1 Score: 132 bits (333), Expect = 1.610e-28
Identity = 70/156 (44.87%), Postives = 93/156 (59.62%), Query Frame = 0
Query:  604 SLAAKAAKRGSGSSVAGMFGLEGEEERAPSRPVVPIDYDDGGXXXXXXXGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVFCALRA 759
            S+ A   ++      A +F +E   E  P R ++PIDY D         G      K L+D IP DKD LFAY ++W  V  H IV +KM PWV +K+ EYLGEE+ T+IDF+  +L A A PQA+L EL+ VL+++AEVF   +WR L F ALRA
Sbjct:  426 SIGAPKKEKSLALPAAPVFKMEEVVEVKPVRAIIPIDYTDEERKASGPAGNVNGDVKSLIDQIPTDKDGLFAYHINWSAVDKHKIVEDKMIPWVRKKVLEYLGEEDKTMIDFLLKQLRAHALPQAILKELQAVLDDEAEVFVKLLWRKLAFEALRA 581          
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Match: A0A3B3V9C1_9TELE (RNA-binding protein 25-like n=2 Tax=Poecilia TaxID=8080 RepID=A0A3B3V9C1_9TELE)

HSP 1 Score: 126 bits (317), Expect = 3.380e-28
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = 0
Query:  617 SVAGMFGLEGEEERAPSRPVVPIDYDDGGXXXXXXXG----------GRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRKIREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWRMLVF 754
            SV   F  E  +E+   R +VP+DYDD         G           ++   K L++ IP  K  LF+YPLDW +V +  ++  ++RPW+ +KI EY+GEEEPTL+DFVC+K+ A + PQ++LD++ +VL+E+AEVF VKMWR+L++
Sbjct:  159 SVFNKFDDEEADEQPRKRKLVPLDYDDDKSLGVDGAGLSSIKGANTEEKRKHIKSLIEKIPTAKPELFSYPLDWSMVDTT-LMERRVRPWINKKIIEYIGEEEPTLVDFVCSKVMAHSMPQSILDDVAMVLDEEAEVFIVKMWRLLIY 305          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353792 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4I4_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CNP4_9STRA2.560e-3550.70Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XWQ2_9STRA4.290e-3344.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3UVP2_HETAK7.080e-3346.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D7FJT5_ECTSI2.860e-3165.38Splicing factor PWI domain-containing protein / RN... [more]
A0A0S7IIW6_9TELE1.510e-2942.38RBM25 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
A0A183IM48_9BILA2.230e-2941.22PWI domain-containing protein n=1 Tax=Soboliphyme ... [more]
UPI0010A32DBF1.270e-2842.28RNA-binding protein 25-like n=1 Tax=Denticeps clup... [more]
A0A8K1C3C9_PYTOL1.610e-2844.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3B3V9C1_9TELE3.380e-2842.57RNA-binding protein 25-like n=2 Tax=Poecilia TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 573..593
NoneNo IPR availableCOILSCoilCoilcoord: 275..349
NoneNo IPR availableGENE3D1.20.1390.10PWI domaincoord: 654..761
e-value: 5.9E-33
score: 115.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 272..337
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..543
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 487..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..409
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 362..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 410..465
NoneNo IPR availablePANTHERPTHR18806RBM25 PROTEINcoord: 25..150
coord: 539..754
IPR002483PWI domainSMARTSM00311pwi_2coord: 684..758
e-value: 4.5E-19
score: 79.4
IPR002483PWI domainPFAMPF01480PWIcoord: 692..754
e-value: 7.1E-12
score: 45.5
IPR002483PWI domainPROSITEPS51025PWIcoord: 671..771
score: 25.173212
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 39..112
e-value: 6.6E-9
score: 45.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 40..109
e-value: 2.2E-7
score: 30.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 38..116
score: 12.168061
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..122
e-value: 5.5E-12
score: 47.8
IPR034268RBM25, RNA recognition motifCDDcd12446RRM_RBM25coord: 38..121
e-value: 2.56301E-25
score: 98.4502
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..118
IPR036483PWI domain superfamilySUPERFAMILY101233PWI domaincoord: 690..754

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_184contigContig_184:147058..161098 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353792mRNA_17805Tribonema minus UTEX_B_3156 mRNAContig_184 147058..161098 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|353792|estExt_Genemark1.C_Ctg_1840017 ID=Trimin1|353792|estExt_Genemark1.C_Ctg_1840017|Name=jgi.p|Trimin1|353792|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=973bp
MGRPPQQQQWYPGPHLPPAMPQQVQGPTGQIEPEKLFVTVYVGKLADAVE
PQYVGEVLRSVGRLAKWNRANDAETNKLKHFGFATYRTAEEADVAVKVLN
GQKVMGEELLVKVGKKEQAAIDEFFAKKSPYQLTSHQTRVADARKRILEP
YQLTSHQTRVADARKRFEAVVAAREGPKVKLEEAAASGGDGAAAAAEAEA
SGVQPKAEATDAGKSAPAAADAAAAAKGAEGGAVKGEGDVLVPPPLRRDE
NGEPEQGMTEEKAAYAFSEAIKFRRLQEERDRRDEEQRRQELQRRLKASH
RAQVEKQRAEEEAKARALKEEAEALKAAAKKAALAAEKAEQEAAAAAAAG
DETATAGDGAAARDKGGEREGSADGGGDASRRRSSRKRSREGRRHSRSRS
RSRSRGSRRRRSGGDRERSRERSREGDRRRSSDRDRDRDRRDRDRDRDSE
RDGGRRRDRDGRGGREGSPPGGGRRRTSGARRGARKSAAIAEQHKCDEEE
RKTRQRMAVLAALGDDEDEPPSAAAATTTRLSSSGGGEEERADWTASIAA
AAAERAAAAAAARHEAAKIAAAAAAAEAEAAEAAVRVEESRKRPAGAGSG
LGFSLAAKAAKRGSGSSVAGMFGLEGEEERAPSRPVVPIDYDDGGAAAAA
PGGGRKDRDKVLVDMIPKDKDALFAYPLDWGVVTSHGIVANKMRPWVVRK
IREYLGEEEPTLIDFVCAKLEARAPPQAVLDELRLVLEEDAEVFTVKMWR
MLVFCALRAAAAPQPAQLLAVGGDRPFLTAVHAVAQATRVLVYAAIKSLI
SKGLPKTDTRDTAATVRERFALTLSIWAVMTPMQELTQPTTVKSTAAEIM
GFRKGSGILSATALGAAVALFDEWESVWGRLAIVPLSAAVRACAYRPYPG
IPYADKDHKRNRLLGGLYGWYFAYYCWFVKGSLRPVIEVYSAFGGFGILY
LGIRAWTNARCTSGGDVVAVAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002483PWI_dom
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034268RBM25_RRM
IPR035979RBD_domain_sf
IPR036483PWI_dom_sf