Trimin1|353774|estExt_Genemark1.C_Ctg_1830014 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353774
Unique Name	Trimin1\|353774\|estExt_Genemark1.C_Ctg_1830014
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	347

Homology

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BLAST of jgi.p|Trimin1|353774 vs. uniprot
Match: A0A835Z6V3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6V3_9STRA)

HSP 1 Score: 487 bits (1254), Expect = 1.060e-170
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0

Query:    1 MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD 346
            MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD
Sbjct:    1 MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAASGPGRRGGADAAXXXXXXXXXXXRLCLICSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCDGNSNQNVVSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRSGXXXSKSGGSVGXXXXXXXXXXXXXXXXXXXXXXXSINASIWSGAANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD 346

[Close]

BLAST of jgi.p|Trimin1|353774 vs. uniprot
Match: A0A835YXK4_9STRA (TAZ-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXK4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.150e-8
Identity = 80/238 (33.61%), Postives = 94/238 (39.50%), Query Frame = 0

Query:   32 GTSNNSLDTIMARAKKAANHIWLLQHARACDGSCAIRGPAAS--------------------------------GPGRRGGADAAXXXXXXXXXXX-----------RLCLICSLVARNDAQYQAATAAARSAGGGES---------------------------------------------------PGLRRPVPRPRSVSYIGHDRLKLKLQFHQRLRIDSIAEEPMLECEGSEE 175
            G  +N LD IMARAKKAANHI LL HAR C G+C +    A+                                    RG     XXXXXXXXXXX           RLCL+CSLVAR  +Q    + +AR  G G+S                                                    G  +P+PRPRSVS+ GHDR      F QR R DSI EEP +EC+   E
Sbjct:   51 GGGSNGLDDIMARAKKAANHILLLTHARGCSGACGLHSCGAARLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAARGXXXXXXXXXXXXXXXXXXXXXXXQEPARLCLVCSLVARFSSQN---STSARHGGSGQSHAGSHSRAGGXXXXXXXXEGVHGVGGAGQPAAATGLEHKRKVPAALWDRDVDGFIKPIPRPRSVSWNGHDRRS----FQQRSRFDSIPEEPSVECDRDSE 281

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353774 vs. uniprot

BLAST of jgi.p|Trimin1|353774 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835Z6V3_9STRA	1.060e-170	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YXK4_9STRA	1.150e-8	33.61	TAZ-type domain-containing protein n=1 Tax=Tribone...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..309
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 328..346
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_183	contig	Contig_183:131115..134149 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353774	mRNA_16695	Tribonema minus UTEX_B_3156	mRNA	Contig_183 131115..134149 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353774|estExt_Genemark1.C_Ctg_1830014 ID=Trimin1|353774|estExt_Genemark1.C_Ctg_1830014|Name=jgi.p|Trimin1|353774|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=347bp
MCPPDYPHGEQQQPANQEDDKQPDSSSDHDGGTSNNSLDTIMARAKKAAN
HIWLLQHARACDGSCAIRGPAASGPGRRGGADAATAAAAAAAPAARLCLI
CSLVARNDAQYQAATAAARSAGGGESPGLRRPVPRPRSVSYIGHDRLKLK
LQFHQRLRIDSIAEEPMLECEGSEESFDEGEDHEYTLSSSPNDSTCGSCD
GNSNQNVVSSSGGSGSGNGHRSSGSSGGSSGSGSRYGRSSSSGGSGSCSS
SYSSRSGGGGSKSGGSVGGSSSSSSSGGGNTSSSGHSSSGSSINASIWSG
AANTGQETAETEHSAERYGAHAPKVSVSRLDRGGERSAAVGRRHAD*