Trimin1|154417|gw1.182.37.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|154417
Unique NameTrimin1|154417|gw1.182.37.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length159
Homology
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A835Z647_9STRA (RRM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z647_9STRA)

HSP 1 Score: 332 bits (851), Expect = 1.840e-115
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQGAV 159
            CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQGAV
Sbjct:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQGAV 159          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A7S3Y3E7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3E7_HETAK)

HSP 1 Score: 195 bits (495), Expect = 2.730e-59
Identity = 92/157 (58.60%), Postives = 108/157 (68.79%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQG 157
            C +G DC ++HR P   D+  +D   D FGRERH++HR+D GGVGS   PSRTLYVGGL    Y D D L  R+   FGEWGEVE++N IPRL IAFVRYR RS+CEFAREAM  Q+L A E+LN+RWA +DPNP AQA  A  D  A  A L  QG
Sbjct:   31 CVRGQDCVYYHRIPTPEDDRSLDRAHDCFGRERHREHRDDRGGVGSFRDPSRTLYVGGLTKAKYTDDDTLTERLHHHFGEWGEVESINFIPRLLIAFVRYRLRSACEFAREAMAGQALDARELLNVRWACEDPNPRAQAANAASDLAAVRATLRQQG 187          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A4D9D4X5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4X5_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.610e-58
Identity = 92/157 (58.60%), Postives = 112/157 (71.34%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQG 157
            CA+GADC +FHR P   ++A    + D FGRERH  HR+DM GVGS   PSRTLYVGG+   AY D  E+E  + +QFGEWGEVE+VN +PR+S AFVR+R RS+CEFA+EAM NQ+L   E LN++WA DDPNP AQ   AR + DA M  L AQG
Sbjct:  229 CARGADCLYFHRIPTVKEDAAAGELHDCFGRERHAGHRDDMDGVGSFTRPSRTLYVGGILKAAYADQREVEAVVREQFGEWGEVEHVNFVPRISAAFVRFRLRSNCEFAKEAMANQALAGKETLNVKWAMDDPNPAAQEAVARSNLDAAMVLLQAQG 385          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A7S2V2X8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2X8_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.060e-56
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 0
Query:   18 DEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQG 157
            ++  +D V+D FGRERH+DHR+DMGGVGS  SPSRTLY+GGL  N Y     LE+ +   F +WGEVEN+NIIPRLSIAFVRYR R+S EFA+E+M NQ L  GE+LN+RWAYDDPNPVAQ    R + DA +  L A+G
Sbjct:    2 EDGVLDEVRDCFGRERHRDHRDDMGGVGSFLSPSRTLYIGGLVKNRYSPLKVLEKALHAHFDQWGEVENINIIPRLSIAFVRYRMRASAEFAKESMANQELDHGEILNIRWAYDDPNPVAQQAEERANADAVVVMLQARG 141          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: W2GE67_PHYPR (Uncharacterized protein n=13 Tax=Phytophthora TaxID=4783 RepID=W2GE67_PHYPR)

HSP 1 Score: 191 bits (484), Expect = 4.920e-56
Identity = 91/159 (57.23%), Postives = 118/159 (74.21%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDA-DELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQGA 158
            CA+GA+C+++HR P  +DE  +  + D FGRERH   R+DM GVG+    SRTLYVGGL+  + Q+A  + E  +W+QFGEWGEVEN+N+I R SI FVRYR R+S EFA+EAM NQSL + EVLN+RWA+DDPNPVA+  A R D DA +A + A+GA
Sbjct:  214 CARGAECSYYHRLPSAADETRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKTTSGQEALKQQEEALWKQFGEWGEVENINVINRKSICFVRYRHRTSAEFAKEAMANQSLQSDEVLNVRWAFDDPNPVAKQAAERSDRDAIVAMMKAKGA 372          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A484E9S1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E9S1_BRELC)

HSP 1 Score: 188 bits (477), Expect = 5.170e-55
Identity = 90/160 (56.25%), Postives = 116/160 (72.50%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELER-RIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQGAV 159
            CA+GA+C+++HR P  +DE  +  + D FGRERH   R+DM GVG+    SRTLYVGG++  +  +A EL++  +W QFGEWGEVEN+N+I R SI F+RYR R S EFA+EAM NQSL   EVLN+RWA+DDPNPVAQ    R D DA +A + A+GAV
Sbjct:  211 CARGAECSYYHRLPSAADEMRIGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGIKSCSGHEAMELQKDALWTQFGEWGEVENINVIQRKSICFIRYRHRISAEFAKEAMSNQSLQCDEVLNVRWAFDDPNPVAQEAGDRSDRDAIIAMMQAKGAV 370          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: F0W3Z1_9STRA (PremRNAsplicing factor cwc2 putative n=2 Tax=Albugo TaxID=65356 RepID=F0W3Z1_9STRA)

HSP 1 Score: 187 bits (475), Expect = 8.010e-55
Identity = 90/157 (57.32%), Postives = 115/157 (73.25%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQG 157
            CA+G++C ++HR P  +DE  +  + D FGR RH   R+DM GVG+ N  SRTLYVGGLR N   D+  LE  ++++F +WGEVEN+N+I RLSI FVRYR R+S EFA+EAM NQSLG  EVLN+RWAYDDPNPVA+   AR D DA +A + A+G
Sbjct:  214 CARGSECNYYHRIPTIADETRIGMMYDCFGRARHATDRDDMTGVGNFNRNSRTLYVGGLR-NVNDDSKRLEEVLFERFTDWGEVENINVIHRLSICFVRYRYRTSAEFAKEAMGNQSLGNSEVLNIRWAYDDPNPVAKQAGARADRDAIIAMVEAKG 369          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: H3GD55_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GD55_PHYRM)

HSP 1 Score: 186 bits (473), Expect = 1.900e-54
Identity = 88/159 (55.35%), Postives = 116/159 (72.96%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADEL-ERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQGA 158
            CA+GA+C+++HR P  +DE  +  + D FGRERH   R+DM GVG+    SRTLYVGGL+  + ++  +  E  +W+QFGEWGEVEN+N+I R SI FVRYR R+S EFA+EAM NQS+ + EVLN+RWA+DDPNPVAQ    R D DA +A + A+GA
Sbjct:  209 CARGAECSYYHRLPAAADETRMGMMHDCFGRERHATDRDDMAGVGNFTRNSRTLYVGGLKSTSGREQVKTQEEALWKQFGEWGEVENINVIHRKSICFVRYRHRTSAEFAKEAMANQSVQSDEVLNVRWAFDDPNPVAQQAGERADHDAVVAMVQAKGA 367          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A7S2H0G1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0G1_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.280e-54
Identity = 89/159 (55.97%), Postives = 110/159 (69.18%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSD--EACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQG 157
            CA G DC + HR PV+ D     +D + DVFGR+RHKDHR+DM GVG +  P RTLYVG L  + Y+D   LE  +W QFGEWGEVE++N+I RLSI FVRYR R   E+ +EAM NQ L  GEVLN+RWA+DDPNPVA     R D DA ++ L ++G
Sbjct:  207 CAYGKDCQYAHRIPVKDDVERMLLDELHDVFGRQRHKDHRDDMDGVGCVMKPCRTLYVGNLIKSKYKDPKALETALWTQFGEWGEVEHINLIARLSIGFVRYRYRCGAEYGKEAMSNQELEHGEVLNVRWAFDDPNPVAVEAGKRADMDAVVSMLESKG 365          
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Match: A0A7R9U6K8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6K8_9STRA)

HSP 1 Score: 187 bits (474), Expect = 2.470e-54
Identity = 83/157 (52.87%), Postives = 115/157 (73.25%), Query Frame = 0
Query:    1 CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSPSRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRYRTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATMAALHAQG 157
            C KG++C++ HR P   DE  +  + D+FGRERH+DHREDM GVGS ++P RTLYV G+   +Y+  +E+E+ + + F  WGEVE++N++ R+S AFVRYR R++ EFA+EAM NQ+L A EVLN+RWA DDPNPVAQ    R + DA ++ L A+G
Sbjct:  222 CGKGSNCSYLHRLPELEDEVRIGDMHDIFGRERHRDHREDMDGVGSFDNPCRTLYVAGINKMSYKSPEEIEKSVRKHFEVWGEVEHINVVARISTAFVRYRVRAAAEFAKEAMRNQALEANEVLNVRWARDDPNPVAQEAIRRANMDAAVSMLEARG 378          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154417 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z647_9STRA1.840e-115100.00RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S3Y3E7_HETAK2.730e-5958.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9D4X5_9STRA2.610e-5858.60Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2V2X8_9STRA4.060e-5661.43Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W2GE67_PHYPR4.920e-5657.23Uncharacterized protein n=13 Tax=Phytophthora TaxI... [more]
A0A484E9S1_BRELC5.170e-5556.25Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
F0W3Z1_9STRA8.010e-5557.32PremRNAsplicing factor cwc2 putative n=2 Tax=Albug... [more]
H3GD55_PHYRM1.900e-5455.35Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2H0G1_9STRA2.280e-5455.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9U6K8_9STRA2.470e-5452.87Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 53..127
e-value: 1.8E-5
score: 34.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 52..131
score: 10.888906
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 33..130
e-value: 2.6E-22
score: 80.8
IPR039171Pre-mRNA-splicing factor Cwc2/Slt11PANTHERPTHR14089PRE-MRNA-SPLICING FACTOR RBM22coord: 1..146
IPR039173Pre-mRNA-splicing factor Cwc2PANTHERPTHR14089:SF2TESTIS-EXPRESSED GENE 16coord: 1..146
IPR034181Pre-mRNA-splicing factor Cwc2, RNA recognition motifCDDcd12360RRM_cwf2coord: 51..130
e-value: 4.43843E-35
score: 115.439
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 49..140

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_182contigContig_182:112011..115144 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154417mRNA_16884Tribonema minus UTEX_B_3156 mRNAContig_182 112011..115144 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|154417|gw1.182.37.1 ID=Trimin1|154417|gw1.182.37.1|Name=jgi.p|Trimin1|154417|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp
CAKGADCTWFHRTPVRSDEACVDTVKDVFGRERHKDHREDMGGVGSINSP
SRTLYVGGLRMNAYQDADELERRIWQQFGEWGEVENVNIIPRLSIAFVRY
RTRSSCEFAREAMFNQSLGAGEVLNLRWAYDDPNPVAQATAARGDFDATM
AALHAQGAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039171Cwc2/Slt11
IPR039173Cwc2
IPR034181Cwc2_RRM
IPR035979RBD_domain_sf