Trimin1|353737|estExt_Genemark1.C_Ctg_1800023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|353737
Unique Name	Trimin1\|353737\|estExt_Genemark1.C_Ctg_1800023
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	394

Homology

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BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A836CJ61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ61_9STRA)

HSP 1 Score: 584 bits (1505), Expect = 2.320e-207
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0

Query:    1 MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAXXXXXXXXXXXXXXXAAAEXXXXXXXXXXXXXXXXXXXXXXXXAVRTKAGHQGESDTHKAAPPXXXYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSARRCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICSNLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ 393
            MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAXXXXXXXXXXXXXXXAAAEXXXXXXXXXXXXXXXXXXXXXXXXAVRTKAGHQGESDTHKAAPPXXXYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSARRCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICSNLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ
Sbjct:    1 MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAXXXXXXXXXXXXXXXAAAEXXXXXXXXXXXXXXXXXXXXXXXXAVRTKAGHQGESDTHKAAPPXXXYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSARRCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICSNLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ 393

[Close]

BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A836CJK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK6_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.670e-13
Identity = 73/155 (47.10%), Postives = 90/155 (58.06%), Query Frame = 0

Query:  164 VDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSV-----QGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEG 313
            +D L  LAA+ILA+EERGLA R  QGSAG ++ AALRVIKG SDITRDR I++ ++      +GLVPVD D +          K+ G   S    XXXXXXXX            E          +ERQ DAEEAL +RRMA PPP+P  + +G
Sbjct:    1 MDELTLLAAEILADEERGLAARRLQGSAGVDLMAALRVIKGSSDITRDRHIQLQEAANPAQARGLVPVDNDPNSDS-------KIDGDDVSAAPPXXXXXXXXVDLDEQRMHQQGE----------DERQHDAEEALPQRRMAQPPPRPPGKGKG 138

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|353737 vs. uniprot

BLAST of jgi.p|Trimin1|353737 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CJ61_9STRA	2.320e-207	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CJK6_9STRA	1.670e-13	47.10	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 275..295
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..127

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_180	contig	Contig_180:261916..272224 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|353737	mRNA_17789	Tribonema minus UTEX_B_3156	mRNA	Contig_180 261816..272224 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|353737|estExt_Genemark1.C_Ctg_1800023 ID=Trimin1|353737|estExt_Genemark1.C_Ctg_1800023|Name=jgi.p|Trimin1|353737|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=394bp
MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAAKKQ
QRQQQQHVVPPAAAEAEAAPAAEAAAAKAQGKGKGKGKAAVRTKAGHQGE
SDTHKAAPPPPPYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSAR
RCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALR
VIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSP
VDMDVDEHRMRLQEVRKLIGLYQEVRKLIGLYQEEERQLDAEEALLERRM
AHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICS
NLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ*