mRNA_17789 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A836CJ61_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ61_9STRA) HSP 1 Score: 583 bits (1504), Expect = 1.180e-206 Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 1
Query: 1 MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAXXXXXXXXXXXXXXXAAAEXXXXXXXXXXXXXXXXXXXXXXXXAVRTKAGHQGESDTHKAAPPXXXYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSARRCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICSNLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ 1179
MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAXXXXXXXXXXXXXXXAAAEXXXXXXXXXXXXXXXXXXXXXXXXAVRTKAGHQGESDTHKAAPPXXXYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSARRCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICSNLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ
Sbjct: 1 MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAXXXXXXXXXXXXXXXAAAEXXXXXXXXXXXXXXXXXXXXXXXXAVRTKAGHQGESDTHKAAPPXXXYPEVPYAPSKQRALRRACHRRAPALVCAPPQLRPPSARRCFGSPTAQLLLRVDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSVQGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEGEDRNLQVMLQSLSGEDLEQQLHQVLEDIGQEAADICSNLASIRDTCEEAHDTQRQLYAHFEQWRYPSQGNARDAIRGMTQ 393
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A836CJK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK6_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 2.380e-13 Identity = 73/155 (47.10%), Postives = 90/155 (58.06%), Query Frame = 1
Query: 490 VDSLAQLAADILANEERGLAERCPQGSAGKEIRAALRVIKGVSDITRDRLIEVAKSV-----QGLVPVDMDVDEQRTRLQEVRKLIGLYQSXXXXXXXXXXXXXXXXXXXXXXYQEVXXXXXXXXXEERQLDAEEALLERRMAHPPPQPSAQDEG 939
+D L LAA+ILA+EERGLA R QGSAG ++ AALRVIKG SDITRDR I++ ++ +GLVPVD D + K+ G S XXXXXXXX E +ERQ DAEEAL +RRMA PPP+P + +G
Sbjct: 1 MDELTLLAAEILADEERGLAARRLQGSAGVDLMAALRVIKGSSDITRDRHIQLQEAANPAQARGLVPVDNDPNSDS-------KIDGDDVSAAPPXXXXXXXXVDLDEQRMHQQGE----------DERQHDAEEALPQRRMAQPPPRPPGKGKG 138
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A835Z9H4_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9H4_9STRA) HSP 1 Score: 1174 bits (3036), Expect = 0.000e+0 Identity = 678/678 (100.00%), Postives = 678/678 (100.00%), Query Frame = 1
Query: 1 MVVRRAATAXXXXXXXXXPPAAFGSPVRINEHLTAADLDSWRKTAQDTLQAGPELRSLSDADHALRILTNLDAGAEEFGHIWCGAAAVGMHGGQGLSSIYHGIQVAEALGCGIPDSLSTVARDLVAQGLYGTKLEGLYYAALVSQKKGSPPLDLVKRVAVLVESSGLVAGDDTPDSLPTQDNAYPAAELLALLAELAPADSAARADAAHALANIASLLPSXXXXXXXXXLLLHPLTSTPXXXXXXXPALERGGAALLRAAAAQLLSLRRCGGDAAAAWRVHAALRALAARADAPLAVAFAPPSVSAGALRSGGGGAAAGLSVRTLLGAEPSDVAGIVVRSLRPHGTKAGEENLLGGPVVAAAAAASGTGVWTAKGLESVAPGRYIAEVSIARGDGAQEETVSAPLVVTGAASVAAVRFAVNGEDVRGGRAKAGARDRLSVAFALEGDVAAPQQCSVRLRHAASGLSTYYSAQRSGGGARPGEYAATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEFEQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPERPSGGVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKALVGLDAPRESPQE 2034
MVVRRAATAXXXXXXXXXPPAAFGSPVRINEHLTAADLDSWRKTAQDTLQAGPELRSLSDADHALRILTNLDAGAEEFGHIWCGAAAVGMHGGQGLSSIYHGIQVAEALGCGIPDSLSTVARDLVAQGLYGTKLEGLYYAALVSQKKGSPPLDLVKRVAVLVESSGLVAGDDTPDSLPTQDNAYPAAELLALLAELAPADSAARADAAHALANIASLLPSXXXXXXXXXLLLHPLTSTPXXXXXXXPALERGGAALLRAAAAQLLSLRRCGGDAAAAWRVHAALRALAARADAPLAVAFAPPSVSAGALRSGGGGAAAGLSVRTLLGAEPSDVAGIVVRSLRPHGTKAGEENLLGGPVVAAAAAASGTGVWTAKGLESVAPGRYIAEVSIARGDGAQEETVSAPLVVTGAASVAAVRFAVNGEDVRGGRAKAGARDRLSVAFALEGDVAAPQQCSVRLRHAASGLSTYYSAQRSGGGARPGEYAATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEFEQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPERPSGGVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKALVGLDAPRESPQE
Sbjct: 1 MVVRRAATAXXXXXXXXXPPAAFGSPVRINEHLTAADLDSWRKTAQDTLQAGPELRSLSDADHALRILTNLDAGAEEFGHIWCGAAAVGMHGGQGLSSIYHGIQVAEALGCGIPDSLSTVARDLVAQGLYGTKLEGLYYAALVSQKKGSPPLDLVKRVAVLVESSGLVAGDDTPDSLPTQDNAYPAAELLALLAELAPADSAARADAAHALANIASLLPSXXXXXXXXXLLLHPLTSTPXXXXXXXPALERGGAALLRAAAAQLLSLRRCGGDAAAAWRVHAALRALAARADAPLAVAFAPPSVSAGALRSGGGGAAAGLSVRTLLGAEPSDVAGIVVRSLRPHGTKAGEENLLGGPVVAAAAAASGTGVWTAKGLESVAPGRYIAEVSIARGDGAQEETVSAPLVVTGAASVAAVRFAVNGEDVRGGRAKAGARDRLSVAFALEGDVAAPQQCSVRLRHAASGLSTYYSAQRSGGGARPGEYAATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEFEQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPERPSGGVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKALVGLDAPRESPQE 678
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: D8LUB5_ECTSI (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUB5_ECTSI) HSP 1 Score: 171 bits (433), Expect = 2.900e-41 Identity = 213/711 (29.96%), Postives = 304/711 (42.76%), Query Frame = 1
Query: 58 PAAFGSPVRINEHLTAADLDSWRKTAQDTLQAGPELRSLSDADHALRILTNLDAGAEEFGH--IWCGAAAVGMHGGQGLSSIYHGIQVAEALGCGIPDSLSTVARDLVAQGLYGTKLEGLYYAALVSQKKGSPPLDLVKRVAVLVESSGLVAGDDTPDSLPT----QDNAYPAAELLALLAELAPADSAARADAAHALANIASLLPSXXXXXXXXXLLLHPLTSTPXXXXXXXPAL-----ERGGAALLRAAAAQLLSLRRCGGDAAAAWR---------VHAALRALAARADAPLAVAFAPPSVSAGALRSGGGGAAAGLSVRTLLGAEPSDVAGIVVRSL-RPHGTKAGEENL--LGGPVVAAAAAASGTGVWTAKGLESVAPGRYIAEVSIARGDGAQEETVSAPLVVTGAASVAAVRFAVN---------------------GEDV--RGGRAKAGARDRLSVAFALEGDVA-----------APQQCSVRLRHAASGLSTYYSAQRSGGGARPGEYAATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEFEQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVR----PERPSGGVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKALVGL 2007
PAA +P + +H +AAD D++ + A L G SL D D+A+R+L LD + G+ C AA G+ G L I+HGI +A+ +G G ++ + A + VA + + L LY+A + G+ D+ + VL + LV D + S P+ N + AAELLA+L A D+ A + L + PAL G L A++L S+ R D A R V+ AL+ + + APL + P S S L SGG L +LLG+ P+ + + SL R G+ A + LG P G + A VAPG Y AE ++ G + PL V+ A +A R +V+ G+D+ A AG L V +LEG AP Q V H +G+ T++ A GG A E+A +V L +E+ RSG+Y + L VG G +V P + +G++ + F + K ++WP+Y R LLHE+DV+L LPEKHHTFREP+ R A + +LF ALV APLA +RR G P +G W YWA+LTM L+ L L VT GRKAL L
Sbjct: 20 PAARAAP--LVDHFSAADGDAFVEAAVRAL--GDADSSLEDRDYAVRLLAALDKPSVASGYRSSACSVAAAGLSNGD-LEQIHHGISLADGVG-GCANAKTWRASEEVADAMKSSDLRSLYHATFAAPLLGA---DVTQGDTVLEKVLDLVGSDGSVRSYPSGPVEAGNTFMAAELLAVLVPSAKGDAKA--------------------------IALREVEVMKDKVLGAEPALVVQLSRAAGDKKLAIKASKLKSMAR---DLLEASRTSLPKSMLGVYEALKLIESYPKAPLPIKLRPSSPSVEELSSGG----VSLLATSLLGS-PAKIKSASLSSLSRADGSDASGDGDGGLGEP---------GADGFRALPSVDVAPGLYTAEFAVEVEGGEKPLVAKLPLAVSSGADLARARVSVSDSHERPLSADASIESYPLARPGKDLLPEDAHASAGEGHHLHVELSLEGXXXXXXXXXXXXXXAPHQVFVCFTHVETGMDTFFVAAPLGGEAS--EFAVSVSLGEESQTFAQRSGEYAVTAL-------VG-----GPLVAPP-ISERLGSIRLGFSEAKERKWPIYARPLLHETDVSLGPLPEKHHTFREPEVRPHAGVSLLFTALVLAPLAGLAYGMRRGGADLRRLPAAGAGRAWCAAYQACMVGVVLLFVTYWATLTMAYTLRVLAVLSVVTTVTGRKALQSL 663
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A7S2UXS1_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS1_9STRA) HSP 1 Score: 112 bits (279), Expect = 1.210e-22 Identity = 84/237 (35.44%), Postives = 108/237 (45.57%), Query Frame = 1
Query: 1351 PQQCSVRLRHAASGLSTYYSAQRSGGGARPGEY-----------------AATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEFEQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVR-PERPSGGVWXXXXXXXXXXXXXXXXL---YWASLTMVVALQALLPLVAVTAFVGRKAL 1998
P Q VR H SG+ T++ AQ G AA +++++E+ QHRSG+Y++ LLA GD V+ EVP+G++H+ K +EWPLY R LLH+SDV L LPE HTFR+PD R + LF V A + + L+R G PSGG L YW LTM L LLPL VT F G KAL
Sbjct: 182 PHQAFVRFHHVESGVDTFFVAQPLRGAGEEDXXXXXEGLDLDQTVGGSLVAAHLNVAEESESFQHRSGEYEVFLLA-------------GDGVVTEAQEVPLGSLHLTVIAEKVREWPLYSRALLHDSDVALAPLPEIQHTFRQPDARPAKVVSALFTLGVGALQLVLLGGLQRAGANLTTLPSGGASLIVAVGFQGCLGAILALFGVYWLRLTMAHCLTILLPLAIVTMFFGHKAL 405
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A485LDG3_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LDG3_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 2.320e-13 Identity = 77/241 (31.95%), Postives = 104/241 (43.15%), Query Frame = 1
Query: 1324 FALEGDVAAP--------QQCSVRLRHAASGL-STYYSAQRSGGGARPGEYAATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEF-EQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPER-PSG--GVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKALVGL 2007
FA++ + AP Q +R H A+ + +T+ A RS + TV + E+ + SG +D+ L+ GD + + +GAV + P P PLY + LLHESDVTL ALPE H R P R PA L ++F ALV APL FV L + G + PSG +W YW LTM+ L L L V G +AL L
Sbjct: 137 FAVDVSLTAPGSSMPLLAHQAFLRFTHRATNVDTTFILAPRS-----HNQLVTTVHIGSESHTFSYLSGIHDMQLI-------------FGDAMFENAIVWDIGAVDLTLGAAPIPPPLPLYTKPLLHESDVTLHALPEITHVMRPPAPRPPAALSMVFTALVLAPLVGFVFFLHQHGAALSKFPSGVGALWSIGFLASVAAILGLYVTYWVQLTMLDTLGYLGVLAPVAFLCGHQALRSL 359
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A1V9Y5P6_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5P6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.510e-10 Identity = 58/187 (31.02%), Postives = 82/187 (43.85%), Query Frame = 1
Query: 1450 AATVDLSKEAAQLQHRSGDYDLALLAPWAVLSVGWPMPIGDMVLPAGVEVPVGAVHMEF-EQPKPQEWPLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPER-PSG--GVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKAL 1998
A V++ E+ + + SG + + L+ +GD + +GAV + P E PLY + LLH+SDVTL ALPE H R D R + LF +V APL F++ L G + + PSG ++ +YW LTM L L L VT F G +AL
Sbjct: 185 AVKVNIGAESKKFSYLSGIHTVQLI-------------LGDTTFENAIVWDLGAVELTLGAAPIEPESPLYAKPLLHDSDVTLKALPEIEHVMRAQDSRPSLAVSNLFTLVVVAPLGAFIIFLLGFGAKLSKFPSGFQAIFALGFIGSMASILALFVVYWLQLTMFATLGYLAILALVTIFFGHQAL 358
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: T0PYQ3_SAPDV (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0PYQ3_SAPDV) HSP 1 Score: 68.2 bits (165), Expect = 1.910e-8 Identity = 47/119 (39.50%), Postives = 57/119 (47.90%), Query Frame = 1
Query: 1651 PLYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVLALRRLGVRPER-PSG--GVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKAL 1998
PLY + LLHESDVTL ALPE H R D R + LF +V +PL FVL L G + + PSG ++ +YW LTM L L L VT F G +AL
Sbjct: 239 PLYAKPLLHESDVTLTALPEIEHVMRAQDSRPSLVVSNLFTLIVVSPLGGFVLFLLGFGAKLSKFPSGVQALFALGFIASMASILGLFVVYWLQLTMFATLGYLAILTVVTLFFGHQAL 357
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Match: A0A024UNM4_9STRA (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UNM4_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.860e-6 Identity = 54/156 (34.62%), Postives = 67/156 (42.95%), Query Frame = 1
Query: 1564 IGDMVLPAGVEVPVGAVHMEFEQPKPQEWP-LYVRTLLHESDVTLVALPEKHHTFREPDRRAPAPLGILFAALVCAPLALFVL-ALRRLGVR--PERPSGGVWXXXXXXXXXXXXXXXXLYWASLTMVVALQALLPLVAVTAFVGRKALVGLDAPR 2019
+GD+ +E +G V ++ P P LY +LLHESDVTL ALPE H R P R + +F LV PL +FVL ALR + P G V L+W LTM L L L V G AL + A R
Sbjct: 208 VGDVQFENAIEWNLGQVALDIPPAPPAPSPPLYTTSLLHESDVTLHALPEITHAMRPPAARPREVVSYVFTVLVLVPLVVFVLWALRTQSLANVPSTFGGVVVTIGFFASVLAVLGLYGLFWLQLTMFAVLTYLAVLGPVVIATGHLALHAVMAGR 363 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
BLAST of jgi.p|Trimin1|353737 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17789 ID=mRNA_17789|Name=jgi.p|Trimin1|353737|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1282bp|location=Sequence derived from alignment at Contig_180:261816..272224- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCAAAGGCGAGGCGCAAGGCTGTGGCAGATACTCCAGGCAGGGCAACback to top protein sequence of jgi.p|Trimin1|353737 >Trimin1|353737|estExt_Genemark1.C_Ctg_1800023 ID=Trimin1|353737|estExt_Genemark1.C_Ctg_1800023|Name=jgi.p|Trimin1|353737|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=394bp MPKARRKAVADTPGRATESFRYTSNGEPAAAESEAAAAPELDYDEAAKKQback to top mRNA from alignment at Contig_180:261816..272224- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17789 ID=mRNA_17789|Name=jgi.p|Trimin1|353737|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10409bp|location=Sequence derived from alignment at Contig_180:261816..272224- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_180:261816..272224- >mRNA_17789 ID=mRNA_17789|Name=jgi.p|Trimin1|353737|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1182bp|location=Sequence derived from alignment at Contig_180:261816..272224- (Tribonema minus UTEX_B_3156 )back to top |