mRNA_1277 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348008
Unique NamemRNA_1277
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|348008 vs. uniprot
Match: A0A835Z453_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z453_9STRA)

HSP 1 Score: 297 bits (761), Expect = 8.820e-102
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 3 
Query:   42 MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYQLELNVYAQEGVEAKAVEAAYS 491
            MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYQLELNVYAQEGVEAKAVEAAYS
Sbjct:    1 MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYQLELNVYAQEGVEAKAVEAAYS 150
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BLAST of jgi.p|Trimin1|348008 vs. uniprot
Match: A0A835ZIS8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS8_9STRA)

HSP 1 Score: 301 bits (771), Expect = 8.850e-101
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = -1 
Query:    3 VDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYVAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA 425
            VDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSY+AFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA
Sbjct:  131 VDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVA 271
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BLAST of jgi.p|Trimin1|348008 vs. uniprot
Match: A0A836C6W3_9STRA (Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W3_9STRA)

HSP 1 Score: 244 bits (623), Expect = 4.280e-74
Identity = 123/128 (96.09%), Postives = 124/128 (96.88%), Query Frame = 3 
Query:   42 MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 425
            MQAKVTIMGP+LEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMS TVVHR   ITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSRTVVHRPPPITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 128
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BLAST of jgi.p|Trimin1|348008 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.220e-12
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 3 
Query:  216 HRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPS 329
            H A HITPNKA ASDCPPHTSRDTKQSCKTLPPQTDPS
Sbjct:  314 HPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS 351
[Close]
BLAST of jgi.p|Trimin1|348008 vs. uniprot
Match: A0A835ZJ73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ73_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-7
Identity = 34/55 (61.82%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:   42 MQAKVTIMGPKLEIVAIYVNPDIIKISRG-SHWAPGADARKKGYITKQSIASLMS 203
            MQAKVTIMGP+LEIVAI+VNPDII+ISRG S  + G   RK         AS MS
Sbjct:    1 MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMS 55
[Close]
BLAST of jgi.p|Trimin1|348008 vs. uniprot
Match: A0A835Z7U0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.180e-6
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:   42 MQAKVTIMGPKLEIVAIYVNPDIIKISRG 128
            MQAKVTIMGP+LEIVAIYVNPDII+ISRG
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIEISRG 29
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348008 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835Z453_9STRA8.820e-102100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZIS8_9STRA8.850e-10199.29Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A836C6W3_9STRA4.280e-7496.09Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A835ZCT2_9STRA1.220e-1292.11Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZJ73_9STRA1.160e-761.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7U0_9STRA2.180e-693.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:361467..363545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348008|estExt_Genemark1.C_Ctg_180041
Hectar predicted targeting categoryother localisation
TranscriptId348330
TrackFilteredModels1
ProteinId348008
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348008gene_1277Tribonema minus UTEX_B_3156 geneContig_18 361467..363545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348008Trimin1|348008|estExt_Genemark1.C_Ctg_180041Tribonema minus UTEX_B_3156 polypeptideContig_18 361467..363504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1277_2exon_1277_2Tribonema minus UTEX_B_3156 exonContig_18 361467..361535 -
exon_1277_1exon_1277_1Tribonema minus UTEX_B_3156 exonContig_18 363121..363545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1277CDS_1277Tribonema minus UTEX_B_3156 CDSContig_18 363121..363504 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1277UTR5_1277Tribonema minus UTEX_B_3156 five_prime_UTRContig_18 363505..363545 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1277 ID=mRNA_1277|Name=jgi.p|Trimin1|348008|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=494bp|location=Sequence derived from alignment at Contig_18:361467..363545- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGCCACCCAGCTCCACGCAGACTCCATCTCAAAGTTTTCATGCAGGCC
AAGGTCACCATAATGGGCCCTAAACTGGAGATTGTGGCTATCTACGTGAA
CCCCGATATCATAAAGATAAGCAGAGGGAGTCACTGGGCGCCAGGCGCTG
ACGCTAGAAAGAAAGGCTACATAACTAAGCAAAGCATCGCCTCCTTGATG
AGCGGGACGGTGGTTCACCGGGCCTCCCATATCACCCCCAACAAAGCATC
CGCAAGCGACTGTCCCCCACACACTAGCAGGGATACCAAACAAAGCTGCA
AGACTCTCCCCCCACAGACAGACCCTTCTAAGGGCCACCCAGCTCCACGC
AGACTCCATCTCAAAGTTTTCATGCAGGCCAAGGTCACCATGATGGGCCC
TGAACTGGAGATTGTGGCTATCTACCAATTGGAGCTCAACGTCTACGCGC
AAGAGGGCGTGGAGGCAAAGGCGGTTGAAGCAGCCTATTCCTAG
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protein sequence of jgi.p|Trimin1|348008

>Trimin1|348008|estExt_Genemark1.C_Ctg_180041 ID=Trimin1|348008|estExt_Genemark1.C_Ctg_180041|Name=jgi.p|Trimin1|348008|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIA
SLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHP
APRRLHLKVFMQAKVTMMGPELEIVAIYQLELNVYAQEGVEAKAVEAAYS
*
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mRNA from alignment at Contig_18:361467..363545-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1277 ID=mRNA_1277|Name=jgi.p|Trimin1|348008|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2079bp|location=Sequence derived from alignment at Contig_18:361467..363545- (Tribonema minus UTEX_B_3156 )
AGGGCCACCCAGCTCCACGCAGACTCCATCTCAAAGTTTTCATGCAGGCC
AAGGTCACCATAATGGGCCCTAAACTGGAGATTGTGGCTATCTACGTGAA
CCCCGATATCATAAAGATAAGCAGAGGGAGTCACTGGGCGCCAGGCGCTG
ACGCTAGAAAGAAAGGCTACATAACTAAGCAAAGCATCGCCTCCTTGATG
AGCGGGACGGTGGTTCACCGGGCCTCCCATATCACCCCCAACAAAGCATC
CGCAAGCGACTGTCCCCCACACACTAGCAGGGATACCAAACAAAGCTGCA
AGACTCTCCCCCCACAGACAGACCCTTCTAAGGGCCACCCAGCTCCACGC
AGACTCCATCTCAAAGTTTTCATGCAGGCCAAGGTCACCATGATGGGCCC
TGAACTGGAGATTGTGGCTATCTACGTGAACCCCGATATCATAGAGATAA
GCAGAGGGAGTCACTGGGCGCCAGGCGCTGACGCTAGAGAGAAAGGCTAT
ATAACAGTAAAGCATCGCCTCCTTGATGAGCGAGGTCACGGCTCACCGCA
GGCTGCAAGCCTGACAAGATATTGCCATTCACCGCTGCGAGTAACTTGTG
GTTGGTGCCGTGGCGTGCAGCCGACTCCGCTTGCTCTTCTTCGAAGTACA
TCAATTCTTTGCAGGCATGACTATTGGTTGCACGCAATCACAATACAATT
GAGCAGCAGTCTATTGGAAGGCTTCACACCTGTGGTCTCAGAGGTCTGAT
TGCGCACCGCAGCCTTGCATCAAGAATGATGGAGCACCCGAAGATACACA
CGGTTGATTCATAGATGATAAAGCGCATCAGGCTATTACTCTGTAGGCAC
ACGCACACTAGCGCACACACAGAGATGGGCAGTTTGACGAAGTCTTATAC
AGCACTTTGTAAAAACGTACCTCTAGGATCCTCTTTGAGGTCCGCCTTCT
GAGTTTGCCTTGGAGCTGCGTTTCACATTGCGCTCCTTGCGTGCTTGTTG
GCGTGGTTGGCCCCTACACGGTGTGGCTTCTTCTTGTCACCATCAGCATT
ACTGGCCACTGCAGATGCAAGGTGCACATGGAGCATCGTATGGAAACAAA
TGCAGGTCAGGCGCCGTCAGAGAGAGCATGTGCTAAGCACATGTGCGCTC
ATGTGCTTCACATGTCAGTTCCTCAAAGACGGATAGGACAGGTATTTGTG
CATCAACCGTTGTACTAGATGCCAGTGTGATGGGCTTAGGCATGCTGATG
TCAGCTGTTGCAGCTAATTTGATGTGGAACATGCACTATGTGTCAGTAGC
TGAAACAGTGTGGAGTTGAGTTGCCTTGAACATACAGTGTGCCGTGCCCG
TGCATTACAGGTCAACATTAGCAGCAGAGGACATGCTGCTCTTGTCATCA
TAGGACAGGGCTCGTCAAGTTGCCGCCATTGAAAGAAACGATAGGCAAGC
TAGGTACTTCTGGGGGTGTCATTGCATTCACGTCCATACCTGACAGACCT
GACGCTTGGATGAACTTCGCCTGGCAAGCACCTCGGCGTGCTCCCATGTC
AGTCATGTGCCATCACAGTTGCTTTGTGATCCAGATGGGCTCCAGTATCC
TCCTTATTCTGTCCTTGTGTTATCAAGAGCTCCGCCTGCTGCAGCGTCCT
GAGCTCATTCTATTGTTCACAACAGCATCATGAAGTGAAGTTACCGTACG
CTCAGGCAGCTCCTTTTCTCTGCTACTTTTTTTAACCTGCAACTTGAAGT
GCGCGTCACCTACGACGGAACCGATTTACACTCAGTCTCGTTTGACTCGT
TTGTCGATTCTACAAGCTGCAGCAAATTCGGCGCGACAAGCTGCAGCATT
CTCGATGACTCGGTGACGACATCTACAAGCTGCAGCAAATTCGGTGACGA
TCTCTACATGATGACGCTCATCACTATTACACTCATGAGCTTTTGGCCTT
CATTATCCTAAGTGGAGCAGGCCGATTTGTTCGAGCGATGCTGTGGCCAC
GCATACTGAGCAATTGGAGCTCAACGTCTACGCGCAAGAGGGCGTGGAGG
CAAAGGCGGTTGAAGCAGCCTATTCCTAG
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Coding sequence (CDS) from alignment at Contig_18:361467..363545-

>mRNA_1277 ID=mRNA_1277|Name=jgi.p|Trimin1|348008|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_18:361467..363545- (Tribonema minus UTEX_B_3156 )
ATGCAGGCCAAGGTCACCATAATGGGCCCTAAACTGGAGATTGTGGCTAT
CTACGTGAACCCCGATATCATAAAGATAAGCAGAGGGAGTCACTGGGCGC
CAGGCGCTGACGCTAGAAAGAAAGGCTACATAACTAAGCAAAGCATCGCC
TCCTTGATGAGCGGGACGGTGGTTCACCGGGCCTCCCATATCACCCCCAA
CAAAGCATCCGCAAGCGACTGTCCCCCACACACTAGCAGGGATACCAAAC
AAAGCTGCAAGACTCTCCCCCCACAGACAGACCCTTCTAAGGGCCACCCA
GCTCCACGCAGACTCCATCTCAAAGTTTTCATGCAGGCCAAGGTCACCAT
GATGGGCCCTGAACTGGAGATTGTGGCTATCTACCAATTGGAGCTCAACG
TCTACGCGCAAGAGGGCGTGGAGGCAAAGGCGGTTGAAGCAGCCTATTCC
TAG
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