Homology
BLAST of jgi.p|Trimin1|173268 vs. uniprot
Match: A0A835ZPM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPM5_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.550e-5 Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 Query: 1 MQELPDLMGDLSSLLRLELCHCELLANL 84
MQELPDLMGDLSSLLRLELCHCELLANL
Sbjct: 1 MQELPDLMGDLSSLLRLELCHCELLANL 28
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|173268|e_gw1.101.25.1 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 173590 |
| Track | FilteredModels1 |
| ProteinId | 173268 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10806 ID=mRNA_10806|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_101:292040..293029- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCAAGAACTGCCAGACTTGATGGGAGACTTGTCGTCGCTGCTCAGGCT
TGAGCTCTGCCATTGCGAGCTGCTCGCTAACCTGCCTAACAGCATTTGCA
GCTTGACGACGCTGACGGCGCTCGATCTTGAGGACTGTGCGCAACTCACT
GCTCTGCCAGACAGTATCGGTCAATTGCGCGCATTGACGTCACTCAGACT
GACCAGGTGTGAGCAGCTTGTCAGCCTGCCAGACAGCGTAGGCGACCTGA
CGGCGCTCAAGCAGTTGGAGTTGCGGCATTTCAACGCACTTCAGACGCTG
CCGAGTAGCATCGGCCGTCTTGCTGCATTGACAGTGCTCAGATTCCACCA
TAGTGTCAGCCTTGAGAGCCTCCCAGACAGCATTGACGCCCTGGCTGCTT
TGACGACGCTCAAGCTCAGCTGCAACAGGGCGCTCACGGGTTTGCCCGAC
AGCATTGTCAATCTGGTCACAGTGACAAAGCTCGACCTGCGCATCTGCCG
TCAGCTGGCGAGCTTACCGGAGTCCATAGGCAAGATGACAGCTCTGTCTC
AGCTTCTACTTGGACGCTGCAGTCATCTCCAGCAGCTGCCGGAGAGCATT
GGGGAGCTGCAGGCCTTAGAGCTGCTTGACTTAGATCAGTGCAGCGCGCT
GACGTGCCTGCCGCAGTCCATCGGCAACATGTCGGCACTCAAATCCCTCA
GCTTGCCTGAGTGTACGCAGCTCACGGCTCTGCCTGACTCGATTGGCAAC
CTCAAGTCACTACGAAATCTCAATTTGAGGGAATGCACAGCGCTGTCGTG
CCTGCCCGACTCAATGGGCCACCTGGGGGCGCTGGTGTGTCTCAACCTGA
GGTACTGCAGCGGGCTTGTCAGCTTGCCGACAACAATCGGCCAGCTGGCG
CCGCCGCAGTATCTTGACGTCGACGGATGTTGTGAGCTCGTGAGACAGTC
CGCCGCAGCATTAGTACTTGCAAACCCAAGCGGAGCCTGA back to topprotein sequence of jgi.p|Trimin1|173268 >Trimin1|173268|e_gw1.101.25.1 ID=Trimin1|173268|e_gw1.101.25.1|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=330bp
MQELPDLMGDLSSLLRLELCHCELLANLPNSICSLTTLTALDLEDCAQLT
ALPDSIGQLRALTSLRLTRCEQLVSLPDSVGDLTALKQLELRHFNALQTL
PSSIGRLAALTVLRFHHSVSLESLPDSIDALAALTTLKLSCNRALTGLPD
SIVNLVTVTKLDLRICRQLASLPESIGKMTALSQLLLGRCSHLQQLPESI
GELQALELLDLDQCSALTCLPQSIGNMSALKSLSLPECTQLTALPDSIGN
LKSLRNLNLRECTALSCLPDSMGHLGALVCLNLRYCSGLVSLPTTIGQLA
PPQYLDVDGCCELVRQSAAALVLANPSGA* back to topmRNA from alignment at Contig_101:292040..293029- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10806 ID=mRNA_10806|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=990bp|location=Sequence derived from alignment at Contig_101:292040..293029- (Tribonema minus UTEX_B_3156 )
ATGCAAGAACTGCCAGACTTGATGGGAGACTTGTCGTCGCTGCTCAGGCT
TGAGCTCTGCCATTGCGAGCTGCTCGCTAACCTGCCTAACAGCATTTGCA
GCTTGACGACGCTGACGGCGCTCGATCTTGAGGACTGTGCGCAACTCACT
GCTCTGCCAGACAGTATCGGTCAATTGCGCGCATTGACGTCACTCAGACT
GACCAGGTGTGAGCAGCTTGTCAGCCTGCCAGACAGCGTAGGCGACCTGA
CGGCGCTCAAGCAGTTGGAGTTGCGGCATTTCAACGCACTTCAGACGCTG
CCGAGTAGCATCGGCCGTCTTGCTGCATTGACAGTGCTCAGATTCCACCA
TAGTGTCAGCCTTGAGAGCCTCCCAGACAGCATTGACGCCCTGGCTGCTT
TGACGACGCTCAAGCTCAGCTGCAACAGGGCGCTCACGGGTTTGCCCGAC
AGCATTGTCAATCTGGTCACAGTGACAAAGCTCGACCTGCGCATCTGCCG
TCAGCTGGCGAGCTTACCGGAGTCCATAGGCAAGATGACAGCTCTGTCTC
AGCTTCTACTTGGACGCTGCAGTCATCTCCAGCAGCTGCCGGAGAGCATT
GGGGAGCTGCAGGCCTTAGAGCTGCTTGACTTAGATCAGTGCAGCGCGCT
GACGTGCCTGCCGCAGTCCATCGGCAACATGTCGGCACTCAAATCCCTCA
GCTTGCCTGAGTGTACGCAGCTCACGGCTCTGCCTGACTCGATTGGCAAC
CTCAAGTCACTACGAAATCTCAATTTGAGGGAATGCACAGCGCTGTCGTG
CCTGCCCGACTCAATGGGCCACCTGGGGGCGCTGGTGTGTCTCAACCTGA
GGTACTGCAGCGGGCTTGTCAGCTTGCCGACAACAATCGGCCAGCTGGCG
CCGCCGCAGTATCTTGACGTCGACGGATGTTGTGAGCTCGTGAGACAGTC
CGCCGCAGCATTAGTACTTGCAAACCCAAGCGGAGCCTGA back to topCoding sequence (CDS) from alignment at Contig_101:292040..293029- >mRNA_10806 ID=mRNA_10806|Name=jgi.p|Trimin1|173268|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=990bp|location=Sequence derived from alignment at Contig_101:292040..293029- (Tribonema minus UTEX_B_3156 )
ATGCAAGAACTGCCAGACTTGATGGGAGACTTGTCGTCGCTGCTCAGGCT
TGAGCTCTGCCATTGCGAGCTGCTCGCTAACCTGCCTAACAGCATTTGCA
GCTTGACGACGCTGACGGCGCTCGATCTTGAGGACTGTGCGCAACTCACT
GCTCTGCCAGACAGTATCGGTCAATTGCGCGCATTGACGTCACTCAGACT
GACCAGGTGTGAGCAGCTTGTCAGCCTGCCAGACAGCGTAGGCGACCTGA
CGGCGCTCAAGCAGTTGGAGTTGCGGCATTTCAACGCACTTCAGACGCTG
CCGAGTAGCATCGGCCGTCTTGCTGCATTGACAGTGCTCAGATTCCACCA
TAGTGTCAGCCTTGAGAGCCTCCCAGACAGCATTGACGCCCTGGCTGCTT
TGACGACGCTCAAGCTCAGCTGCAACAGGGCGCTCACGGGTTTGCCCGAC
AGCATTGTCAATCTGGTCACAGTGACAAAGCTCGACCTGCGCATCTGCCG
TCAGCTGGCGAGCTTACCGGAGTCCATAGGCAAGATGACAGCTCTGTCTC
AGCTTCTACTTGGACGCTGCAGTCATCTCCAGCAGCTGCCGGAGAGCATT
GGGGAGCTGCAGGCCTTAGAGCTGCTTGACTTAGATCAGTGCAGCGCGCT
GACGTGCCTGCCGCAGTCCATCGGCAACATGTCGGCACTCAAATCCCTCA
GCTTGCCTGAGTGTACGCAGCTCACGGCTCTGCCTGACTCGATTGGCAAC
CTCAAGTCACTACGAAATCTCAATTTGAGGGAATGCACAGCGCTGTCGTG
CCTGCCCGACTCAATGGGCCACCTGGGGGCGCTGGTGTGTCTCAACCTGA
GGTACTGCAGCGGGCTTGTCAGCTTGCCGACAACAATCGGCCAGCTGGCG
CCGCCGCAGTATCTTGACGTCGACGGATGTTGTGAGCTCGTGAGACAGTC
CGCCGCAGCATTAGTACTTGCAAACCCAAGCGGAGCCTGA back to top
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