Trimin1|351773|estExt_Genemark1.C_Ctg_1000004 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351773
Unique Name	Trimin1\|351773\|estExt_Genemark1.C_Ctg_1000004
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	262

Homology

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BLAST of jgi.p|Trimin1|351773 vs. uniprot
Match: A0A836CN65_9STRA (CUE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN65_9STRA)

HSP 1 Score: 393 bits (1010), Expect = 2.500e-136
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0

Query:    1 MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPRQALRGTPVNLPDNFLRVPGSMTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEMQRAGSGAKKDL 261
            MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPRQALRGTPVNLPDNFLRVPGSMTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEMQRAGSGAKKDL
Sbjct:    1 MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPRQALRGTPVNLPDNFLRVPGSMTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEMQRAGSGAKKDL 261

[Close]

BLAST of jgi.p|Trimin1|351773 vs. uniprot
Match: D7G1U7_ECTSI (CUE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 5.730e-12
Identity = 62/161 (38.51%), Postives = 83/161 (51.55%), Query Frame = 0

Query:   84 RGTPVNLPDNFLRVPG------SMTEESAQVQADERLAAMLQNADF---LAAHPE--YASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLG 233
            RG  V LP+ FLR PG             QV AD +LA MLQN  F   L +HP+  Y   G R+  +R +      D GPS+ EQ+ +MG D++R +  LA +W +K        +  +SVPLM+     AD D+AEVV F Q + T R  SGG    +G
Sbjct:  163 RGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGD-GPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDAD-DQAEVVHFSQNNATRRSSSGGSAAGVG 321

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351773 vs. uniprot

BLAST of jgi.p|Trimin1|351773 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CN65_9STRA	2.500e-136	100.00	CUE domain-containing protein n=1 Tax=Tribonema mi...	[more]
D7G1U7_ECTSI	5.730e-12	38.51	CUE domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.10		coord: 1..35 e-value: 1.3E-5 score: 26.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..261
None	No IPR available	CDD	cd14279	CUE	coord: 1..25 e-value: 1.17117E-4 score: 36.6774
IPR040192	CUE domain-containing protein 1	PANTHER	PTHR13467	CUE DOMAIN CONTAINING PROTEIN 1	coord: 1..125
IPR003892	Ubiquitin system component CUE	PROSITE	PS51140	CUE	coord: 1..30 score: 10.303154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_100	contig	Contig_100:10181..11845 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351773	mRNA_9994	Tribonema minus UTEX_B_3156	mRNA	Contig_100 10181..12191 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351773|estExt_Genemark1.C_Ctg_1000004 ID=Trimin1|351773|estExt_Genemark1.C_Ctg_1000004|Name=jgi.p|Trimin1|351773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=262bp
MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAGAAAAAVPPPDVTHDEE
MAQELYRQMNAAPEPPARPPPQQQQQQIPRQALRGTPVNLPDNFLRVPGS
MTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAED
TGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRN
STAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEM
QRAGSGAKKDL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR040192	CUEDC1
IPR003892	CUE