mRNA_9994 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351773
Unique NamemRNA_9994
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351773 vs. uniprot
Match: A0A836CN65_9STRA (CUE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN65_9STRA)

HSP 1 Score: 393 bits (1009), Expect = 2.790e-134
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1 
Query:    1 MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPRQALRGTPVNLPDNFLRVPGSMTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEMQRAGSGAKKDL 783
            MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPRQALRGTPVNLPDNFLRVPGSMTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEMQRAGSGAKKDL
Sbjct:    1 MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPRQALRGTPVNLPDNFLRVPGSMTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEMQRAGSGAKKDL 261
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BLAST of jgi.p|Trimin1|351773 vs. uniprot
Match: D7G1U7_ECTSI (CUE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.340e-11
Identity = 62/161 (38.51%), Postives = 83/161 (51.55%), Query Frame = 1 
Query:  250 RGTPVNLPDNFLRVPG------SMTEESAQVQADERLAAMLQNADF---LAAHPE--YASYGGRAPAARTSHAQHAEDTGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRNSTAADEDEAEVVTFDQGDTTTRRGSGGHLGSLG 699
            RG  V LP+ FLR PG             QV AD +LA MLQN  F   L +HP+  Y   G R+  +R +      D GPS+ EQ+ +MG D++R +  LA +W +K        +  +SVPLM+     AD D+AEVV F Q + T R  SGG    +G
Sbjct:  163 RGRRVALPEQFLRTPGWTGGGAGEVSSDPQVAADAKLAMMLQNEAFQRELQSHPDLAYLGRGSRSGDSRGNAFGMGGD-GPSIKEQMTSMGNDIRRKVDELAVRWKMKDPGRADQTTEYSSVPLMSSVDDDAD-DQAEVVHFSQNNATRRSSSGGSAAGVG 321
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351773 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CN65_9STRA2.790e-134100.00CUE domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G1U7_ECTSI2.340e-1138.51CUE domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:10181..12191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351773|estExt_Genemark1.C_Ctg_1000004
Max annot lvl2759|Eukaryota
EggNOG OGs2D10K@1|root,2SG93@2759|Eukaryota
Evalue9.4e-13
Seed ortholog2880.D7G1U7
Hectar predicted targeting categoryother localisation
TranscriptId352095
TrackFilteredModels1
ProteinId351773
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351773gene_9994Tribonema minus UTEX_B_3156 geneContig_100 10181..12191 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9994_1exon_9994_1Tribonema minus UTEX_B_3156 exonContig_100 10181..10213 +
exon_9994_2exon_9994_2Tribonema minus UTEX_B_3156 exonContig_100 10303..10626 +
exon_9994_3exon_9994_3Tribonema minus UTEX_B_3156 exonContig_100 11417..12191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9994CDS_9994Tribonema minus UTEX_B_3156 CDSContig_100 10181..10213 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9994UTR3_9994Tribonema minus UTEX_B_3156 three_prime_UTRContig_100 11846..12191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351773Trimin1|351773|estExt_Genemark1.C_Ctg_1000004Tribonema minus UTEX_B_3156 polypeptideContig_100 10181..11845 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9994 ID=mRNA_9994|Name=jgi.p|Trimin1|351773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1132bp|location=Sequence derived from alignment at Contig_100:10181..12191+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGAGATGCCATCGCGGCGGTGCTCGCGTCCAACGATGGAAATCT
GGAAAGGACCGCGGAGCAGTTGCTGTCAGCAGGCACGGACACTACAGCGG
GTGCTGCTGCAGCCGCAGTTCCTCCCCCAGACGTTACTCATGACGAGGAG
ATGGCGCAGGAGCTGTACCGGCAGATGAACGCGGCGCCGGAGCCTCCGGC
TCGTCCGCCGCCGCAGCAGCAGCAGCAGCAAATACCGAGACAGGCTTTGC
GAGGCACTCCTGTCAACCTGCCCGATAACTTCTTGAGGGTACCTGGGAGC
ATGACAGAGGAGAGTGCGCAAGTGCAGGCGGACGAACGCCTCGCCGCCAT
GCTGCAGAATGCCGACTTTCTGGCAGCGCACCCTGAGTACGCCAGCTACG
GCGGACGCGCACCCGCAGCACGCACTAGCCACGCGCAGCACGCAGAGGAC
ACGGGGCCCTCTGTAACGGAGCAGCTGCAGACCATGGGAGCGGACATGAA
GCGCAACCTACTGGGCCTGGCGGCAAAGTGGAACCTCAAGCCATCGACCG
CGCCCGCTGCCGATAGCGGTTCCGCCTCCGTTCCACTGATGAACCGCAAC
AGCACTGCCGCAGATGAAGATGAAGCTGAGGTGGTGACATTTGACCAGGG
GGACACAACCACTCGGCGGGGGTCTGGCGGTCACTTGGGGTCTCTGGGGG
GTAGCTTTGGACGCACCAATGAGGGTGCTGGTGATGCTGCTATGGAGATG
CAAAGGGCGGGCAGCGGCGCCAAGAAAGATCTGTAGGTATCGCAGCCGGA
AGGTGCAGACTCCCAGAGCTGTTGTCTTTAGGGATTGCGCTGCCCAGACG
CAGGTCATATCCGCTCGCTCGTCCTGAAATGCTGACGACAAACAGGCATG
AAGGGAGTCTTGTGATGAGTCCTGAGTCATCCGGCTTGCAGGCACGTGTA
TCAAATCATCACCTTCGGGTATACCCGCCCTGGTTTTGCCCCCAAGTCCC
GAGTGCAGACATATGTATGATTAGAGGCGCGAAAGCGCAGTGCCATGTGT
GGTACACAAACAAGCTACAAGCTGGTGAGATAATGTCATCCTCAAATGGG
CAAATGAGCACTGCTGCTTCATGGCAAGCCAA
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protein sequence of jgi.p|Trimin1|351773

>Trimin1|351773|estExt_Genemark1.C_Ctg_1000004 ID=Trimin1|351773|estExt_Genemark1.C_Ctg_1000004|Name=jgi.p|Trimin1|351773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=262bp
MDRDAIAAVLASNDGNLERTAEQLLSAGTDTTAGAAAAAVPPPDVTHDEE
MAQELYRQMNAAPEPPARPPPQQQQQQIPRQALRGTPVNLPDNFLRVPGS
MTEESAQVQADERLAAMLQNADFLAAHPEYASYGGRAPAARTSHAQHAED
TGPSVTEQLQTMGADMKRNLLGLAAKWNLKPSTAPAADSGSASVPLMNRN
STAADEDEAEVVTFDQGDTTTRRGSGGHLGSLGGSFGRTNEGAGDAAMEM
QRAGSGAKKDL*
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mRNA from alignment at Contig_100:10181..12191+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9994 ID=mRNA_9994|Name=jgi.p|Trimin1|351773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2011bp|location=Sequence derived from alignment at Contig_100:10181..12191+ (Tribonema minus UTEX_B_3156 )
ATGGACAGAGATGCCATCGCGGCGGTGCTCGCGGTGAGTCTCCGTGATGA
TTCTGCCCGCTGTCTGTCGTTCACATTTTACTGACAATACTTATGTGTAT
GACACCTTCTCAATGTCTGCAGTCCAACGATGGAAATCTGGAAAGGACCG
CGGAGCAGTTGCTGTCAGCAGGCACGGACACTACAGCGGGTGCTGCTGCA
GCCGCAGTTCCTCCCCCAGACGTTACTCATGACGAGGAGATGGCGCAGGA
GCTGTACCGGCAGATGAACGCGGCGCCGGAGCCTCCGGCTCGTCCGCCGC
CGCAGCAGCAGCAGCAGCAAATACCGAGACAGGCTTTGCGAGGCACTCCT
GTCAACCTGCCCGATAACTTCTTGAGGGTACCTGGGAGCATGACAGAGGA
GAGTGCGCAAGTGCAGGCGGACGAACGCCTCGCCGCCATGCTGCAGGTGA
GGGATCCACCGCAGTTGGTTCCACCAGACACTGCCTCAAGCATACAGGTA
CCACTTTGTATGCATGTATCGCCCACTTGCATGCCGGTGAGTACAAGTGC
TTCCCAACAACGCTTCAGGTTGTTGACTGCTGACTGCAAGTGTCCTGGTC
TTGTCAAATCTGGTCCATGTAGGGTGCTTGCAGCAGCAAAGCTCTCAAAT
TTGTCAGGAGCATACATTGGCCCTCTTTGTACATATCAAAAAGATCATAT
ACCAGCGTTGCTCATGAGCTGCCGCCACTGCTCTCATCGGGGAGCTTGTA
GCTGTCACATGCACACATGTGCGCCGTGGGCATTGCTATAATGCATACAG
ACCTTCCTTGACCAAATGCCTAAATGCAGACTGGCCTGCAGCAAGGTCGT
GTTATTTTGTGGCCCATGCCTTTCAGCCACAATTATTCTACTTTTGAGGC
ATGTGCATCATTCATGTTTCACGTCCACTGACTCCTAGGCCAAAATGCAG
CGCAACAGGAAATTGTTCTTGCACTACGCGGCCTCGGTGTACATTCGAGT
GCCATGGTTTCTCAGACAGGCTTCACACAGCCACTCACTCCTAGTAAAAT
GTCAATGATGAGTGAAGCCACACACTCCGCTCTCTGCATGTTTCCATATT
GCTACACCATATCTCCACAGCCACCATCCTCTATCTTCACCGCATGCTAC
TCACACCAGCGCACCACAATCATGATCCTGATTCCCGCCAACCAAATGAT
GAGCACTGCTTCCCTGAAATTCTTCGCATCGCGCAGAATGCCGACTTTCT
GGCAGCGCACCCTGAGTACGCCAGCTACGGCGGACGCGCACCCGCAGCAC
GCACTAGCCACGCGCAGCACGCAGAGGACACGGGGCCCTCTGTAACGGAG
CAGCTGCAGACCATGGGAGCGGACATGAAGCGCAACCTACTGGGCCTGGC
GGCAAAGTGGAACCTCAAGCCATCGACCGCGCCCGCTGCCGATAGCGGTT
CCGCCTCCGTTCCACTGATGAACCGCAACAGCACTGCCGCAGATGAAGAT
GAAGCTGAGGTGGTGACATTTGACCAGGGGGACACAACCACTCGGCGGGG
GTCTGGCGGTCACTTGGGGTCTCTGGGGGGTAGCTTTGGACGCACCAATG
AGGGTGCTGGTGATGCTGCTATGGAGATGCAAAGGGCGGGCAGCGGCGCC
AAGAAAGATCTGTAGGTATCGCAGCCGGAAGGTGCAGACTCCCAGAGCTG
TTGTCTTTAGGGATTGCGCTGCCCAGACGCAGGTCATATCCGCTCGCTCG
TCCTGAAATGCTGACGACAAACAGGCATGAAGGGAGTCTTGTGATGAGTC
CTGAGTCATCCGGCTTGCAGGCACGTGTATCAAATCATCACCTTCGGGTA
TACCCGCCCTGGTTTTGCCCCCAAGTCCCGAGTGCAGACATATGTATGAT
TAGAGGCGCGAAAGCGCAGTGCCATGTGTGGTACACAAACAAGCTACAAG
CTGGTGAGATAATGTCATCCTCAAATGGGCAAATGAGCACTGCTGCTTCA
TGGCAAGCCAA
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Coding sequence (CDS) from alignment at Contig_100:10181..12191+

>mRNA_9994 ID=mRNA_9994|Name=jgi.p|Trimin1|351773|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=786bp|location=Sequence derived from alignment at Contig_100:10181..12191+ (Tribonema minus UTEX_B_3156 )
ATGGACAGAGATGCCATCGCGGCGGTGCTCGCGTCCAACGATGGAAATCT
GGAAAGGACCGCGGAGCAGTTGCTGTCAGCAGGCACGGACACTACAGCGG
GTGCTGCTGCAGCCGCAGTTCCTCCCCCAGACGTTACTCATGACGAGGAG
ATGGCGCAGGAGCTGTACCGGCAGATGAACGCGGCGCCGGAGCCTCCGGC
TCGTCCGCCGCCGCAGCAGCAGCAGCAGCAAATACCGAGACAGGCTTTGC
GAGGCACTCCTGTCAACCTGCCCGATAACTTCTTGAGGGTACCTGGGAGC
ATGACAGAGGAGAGTGCGCAAGTGCAGGCGGACGAACGCCTCGCCGCCAT
GCTGCAGAATGCCGACTTTCTGGCAGCGCACCCTGAGTACGCCAGCTACG
GCGGACGCGCACCCGCAGCACGCACTAGCCACGCGCAGCACGCAGAGGAC
ACGGGGCCCTCTGTAACGGAGCAGCTGCAGACCATGGGAGCGGACATGAA
GCGCAACCTACTGGGCCTGGCGGCAAAGTGGAACCTCAAGCCATCGACCG
CGCCCGCTGCCGATAGCGGTTCCGCCTCCGTTCCACTGATGAACCGCAAC
AGCACTGCCGCAGATGAAGATGAAGCTGAGGTGGTGACATTTGACCAGGG
GGACACAACCACTCGGCGGGGGTCTGGCGGTCACTTGGGGTCTCTGGGGG
GTAGCTTTGGACGCACCAATGAGGGTGCTGGTGATGCTGCTATGGAGATG
CAAAGGGCGGGCAGCGGCGCCAAGAAAGATCTGTAG
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