mRNA_1497 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A835ZEI1_9STRA (Ribonuclease H-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI1_9STRA) HSP 1 Score: 517 bits (1331), Expect = 2.090e-185 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 1 Query: 1 MTPSPQLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 768 MTPSPQLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV Sbjct: 1 MTPSPQLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 256
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A835Z4U2_9STRA (Ribonuclease H-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U2_9STRA) HSP 1 Score: 304 bits (778), Expect = 1.880e-101 Identity = 156/248 (62.90%), Postives = 189/248 (76.21%), Query Frame = 1 Query: 34 NRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKR--QPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVEST--GMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVS 765 N+Y A+W+ LDIECT LDY + +FGILEIAA++VD++MEVIDTFHVIV+Q A II +S+WCK+RF SRLEGGNDLFAQC+ S ITE AG MLE FI+KHAK+R QP + QKR F+AAE E IDA + E + E+ VE T G+ H+R+MLAGCSVYFDRAVLLH YPRLR IGHKTIELSSLLEI R+WRPD+L +LPP Q+ HRAL+DV+E+VSLLRWFWR +V+ Sbjct: 3 NKYAAIWLFLDIECTQLDYQAHNFGILEIAAAIVDNSMEVIDTFHVIVNQPAHIIAAASKWCKKRFCSRLEGGNDLFAQCDASIITEAQAGFMLEQFIMKHAKERHMQP----DEAEQKRRFFQAAELETIDAAIETETSEAFIEK--------DVEKTQGGISHFRVMLAGCSVYFDRAVLLHIYPRLRNLIGHKTIELSSLLEIARKWRPDILATLPPAQDAHRALIDVLESVSLLRWFWRFIVVA 238
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A836CDV0_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDV0_9STRA) HSP 1 Score: 239 bits (609), Expect = 2.200e-75 Identity = 124/244 (50.82%), Postives = 159/244 (65.16%), Query Frame = 1 Query: 37 RYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQ----KRNLFRAAEFEPI----DALVAH-EVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRW 741 RY+A W+ DIECT LD TSP FG+LEIAA+V D + V DTFHVI+HQ R++ +S WC + F R GGNDLF QC S I+E AG +LEAFI+KHAK R+ A + + KRN+F+ AEF + DA+ E D P + + + + YR+M AGCS YFDR V+L+ +P LR YI HKTI+++S+LEI RRWRPDLLRSLP Q HRAL DV+E++ LLRW Sbjct: 17 RYDATWIWCDIECTGLDPTSPGFGVLEIAAAVTGDDLTVQDTFHVIIHQPDRVLAGASSWCAEHFGPRYAGGNDLFQQCRASVISEAEAGELLEAFIVKHAKPRKARAAAAAEVPEAVVKRNVFKTAEFGDVIEDGDAMAGDIEAQDTRRHRAGPAYGRPRPRAQQHDVYRVMFAGCSCYFDRGVILNRFPNLRKYIAHKTIDVTSVLEITRRWRPDLLRSLPAPQGTHRALPDVLESICLLRW 260
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A835YX31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX31_9STRA) HSP 1 Score: 233 bits (594), Expect = 5.770e-73 Identity = 125/248 (50.40%), Postives = 163/248 (65.73%), Query Frame = 1 Query: 37 RYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHD----AQKRNLFRAAEFEPIDALVAHEVV--DGPAEEVAPPKQQM-------KVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRW 741 RY+A+W+ DIECT LD +P FGILEIAA++ D + V DTFHV+VHQ R++ +SRWC + F R GGNDLF Q + S I+E AG MLEAFI+KHAK R+ A + + A KR++F+ AEF V EVV +GPA E A +Q + ++ + +R+M AGCS YFDR +L +P LR Y+ HKTI+++S+LEI RRWRPDLLR LP Q HRAL DV+E+V LLRW Sbjct: 28 RYDAIWLWCDIECTGLDPAAPGFGILEIAAAITGDDLTVQDTFHVVVHQPPRVLAGASRWCAEHFGPRYAGGNDLFEQSKASVISESAAGEMLEAFIVKHAKPRRARAAAAAEGPEAACKRSMFKTAEF----GDVMEEVVMPEGPATEGAQRQQPXXXXXRTNRPKAQQHDVFRVMFAGCSCYFDRGAILARFPNLRKYVAHKTIDVTSVLEITRRWRPDLLRCLPAPQGVHRALPDVLESVCLLRW 271
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A835Z6J6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J6_9STRA) HSP 1 Score: 173 bits (439), Expect = 3.490e-52 Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1 Query: 508 MEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 768 MEHYRIMLAGCSVYFDRAVLLH YPRLR+Y+GHKTIELSSLL IVRRWRPDLLRSLPPTQECHRAL+DVMEAVSLLRWFWRSFLV V Sbjct: 1 MEHYRIMLAGCSVYFDRAVLLHRYPRLRLYVGHKTIELSSLLGIVRRWRPDLLRSLPPTQECHRALIDVMEAVSLLRWFWRSFLVGV 87
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: D8LPG5_ECTSI (EsV-1-139 n=2 Tax=root TaxID=1 RepID=D8LPG5_ECTSI) HSP 1 Score: 114 bits (286), Expect = 4.870e-27 Identity = 76/238 (31.93%), Postives = 127/238 (53.36%), Query Frame = 1 Query: 52 WMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQ-NARIIGNSSRWCKQRFRSRLEGGNDLFAQCELSTITEEMAGAMLEAFILKHAKKRQPAAGSEHDAQKRNLFRAAEFEPID-ALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFL 759 W +D+E T LD T + ILEI V D + ID+ +++H ++ ++ SS WC+++F R EGGN LF C S ++ A + F ++K G +D + + + F D L A+ G ++ QQ S + + +LAG +VYFDR LL +P L+ + ++ +++S+ LE+VRRWRPD+ LP HRA D+++++SL+++F +FL Sbjct: 43 WFWIDMETTGLD-TDTNL-ILEIVMVVTDRDLNEIDSMRLVLHHPHSILLARSSAWCRRKFCHRREGGNGLFEACHFSALSHHEAEYRMWNFFDHYSKD----VGGRYDTTQ--ITSSQPF--FDRTLGANGTFLGASDASRCRHQQQPRRSN---YKKCLLAGSTVYFDRIFLLKYFPCLKTFFHYRVVDVSTPLEMVRRWRPDVAAKLPRRNGSHRAYDDILDSISLMKFFKETFL 267
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: Q6XM84_9PHYC (FirrV-1-A3 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM84_9PHYC) HSP 1 Score: 111 bits (278), Expect = 3.610e-26 Identity = 76/242 (31.40%), Postives = 122/242 (50.41%), Query Frame = 1 Query: 37 RYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEVIDTFHVIVHQNARIIG-NSSRWCKQRFRSRLEGGNDLFAQCELS-TITEEMAGAMLEAF--ILKH---AKKRQPAAGSEHDAQKRNLFRAAEFEPIDALVAHEVVDGPAEEVAPPKQQMKVESTGMEHYRIMLAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRW 741 RYN W +D+E +SLD++ + +LE+A V D + V D+ H+++H I+ SS WCKQRF S GGN LF +C S T + ML+ F H R+P + P+ H + PKQ G + + +L G +VYFDR ++ +P L+ Y+ HK I+++++LE +R+RPDL++ P HRA+ D+M++++L R+ Sbjct: 8 RYNP-WFWIDMETSSLDFSQSE--VLEVALVVTDHHLNVWDSLHLVIHHPINILMLKSSNWCKQRFCSLKYGGNGLFDECHYSETSIADATHKMLQFFEYYCTHDIGTGSRRPPPSERSFFDRTRGTNGVLLSPLRCT--HRDI---------PKQCTTTPG-GSKKKQALLTGSTVYFDRRIIETHFPLLQKYLSHKNIDVTTMLETAKRFRPDLMQYKPKPLMKHRAMDDIMDSLALYRY 234
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: B3P8E1_DROER (GG12405 n=2 Tax=Drosophila erecta TaxID=7220 RepID=B3P8E1_DROER) HSP 1 Score: 69.3 bits (168), Expect = 8.660e-11 Identity = 29/76 (38.16%), Postives = 51/76 (67.11%), Query Frame = 1 Query: 529 LAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSF 756 L G SVY DR + C P + Y+ ++ +++S++ E+VRRWRP+LL S P HR++ D+ME+++ L ++ ++F Sbjct: 107 LGGNSVYMDRLFIRKCMPLVDDYLHYRIVDVSTIKELVRRWRPELLSSAPKKTFTHRSMDDIMESINELNYYKKNF 182
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A8B7KWF2_DROEL (probable oligoribonuclease n=1 Tax=Drosophila elegans TaxID=30023 RepID=A0A8B7KWF2_DROEL) HSP 1 Score: 69.3 bits (168), Expect = 1.520e-10 Identity = 30/77 (38.96%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 529 LAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFL 759 LAG SVY DR + P + Y+ ++ I++S++ E+ RRWRPD+L++ P HR+L D++E++S LR++ +F+ Sbjct: 140 LAGNSVYMDRLFIRRFMPSVDEYLHYRIIDVSTIKELARRWRPDVLKAAPKKTFAHRSLDDILESISELRYYKANFI 216
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Match: A0A034WYC5_BACDO (Putative oligoribonuclease n=3 Tax=Bactrocera TaxID=47832 RepID=A0A034WYC5_BACDO) HSP 1 Score: 68.2 bits (165), Expect = 4.410e-10 Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 1 Query: 529 LAGCSVYFDRAVLLHCYPRLRMYIGHKTIELSSLLEIVRRWRPDLLRSLPPTQECHRALVDVMEAVSLLRWFWRSFLVSV 768 LAG S+Y DR L H P + Y+ ++ I++SS+ E+ RRWR DL++S P + HR+L D+ +++ L+++ +F +V Sbjct: 145 LAGNSIYMDRLFLRHHMPSVDNYLHYRVIDISSIKELCRRWRSDLIKSAPEKRLLHRSLEDLQDSIEELKYYRDNFFKTV 224 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161894 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1497 ID=mRNA_1497|Name=jgi.p|Trimin1|161894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=771bp|location=Sequence derived from alignment at Contig_18:1248728..1249498- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACCCCCTCGCCTCAGCTTTTCAGCTCTCAAAACCGTTACAATGCGCTback to top protein sequence of jgi.p|Trimin1|161894 >Trimin1|161894|e_gw1.18.257.1 ID=Trimin1|161894|e_gw1.18.257.1|Name=jgi.p|Trimin1|161894|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=257bp MTPSPQLFSSQNRYNALWMMLDIECTSLDYTSPDFGILEIAASVVDDAMEback to top mRNA from alignment at Contig_18:1248728..1249498- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1497 ID=mRNA_1497|Name=jgi.p|Trimin1|161894|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=771bp|location=Sequence derived from alignment at Contig_18:1248728..1249498- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1248728..1249498- >mRNA_1497 ID=mRNA_1497|Name=jgi.p|Trimin1|161894|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=771bp|location=Sequence derived from alignment at Contig_18:1248728..1249498- (Tribonema minus UTEX_B_3156 )back to top |