mRNA_1519 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A836CI72_9STRA (CheY-like superfamily protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI72_9STRA) HSP 1 Score: 256 bits (653), Expect = 3.190e-86 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1 Query: 1 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNKP 387 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNKP Sbjct: 1 MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNKP 129
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A836CPC2_9STRA (Response regulatory domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPC2_9STRA) HSP 1 Score: 142 bits (357), Expect = 2.700e-38 Identity = 69/118 (58.47%), Postives = 92/118 (77.97%), Query Frame = 1 Query: 34 LIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMR----WSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVK 375 ++VEDY LSA YMSQAL++C C + A +GE A+E+AR +GPFDVVFVDL+MKGMGG+ CI L+SM W+ IVAMSA+ +L +SA+AAGAD+F+HKL PVRDI A++ ++K Sbjct: 1 MLVEDYQLSALYMSQALRMCGCTDVHAALNGECAIELARVKGPFDVVFVDLVMKGMGGVECIRALRSMEHDNGWTQCIVAMSADAELSSSALAAGADRFMHKLAQPVRDIFAMIASIK 118
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A835Z4T2_9STRA (CheY-like superfamily protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4T2_9STRA) HSP 1 Score: 132 bits (331), Expect = 4.290e-37 Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 25 LHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMR----WSGYIVAMSANEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNK 384 L VL++EDY LSA+YM QALKLC+C + IA SGE+A+ + GPFDVVFVDL+M GMGG+ C+ L+ M W VAMS++E L+ A+ AGAD+FL+KL HPVR++ I+ V K Sbjct: 6 LLVLLIEDYALSAKYMMQALKLCNCEEVVIASSGEEAIHITEKHGPFDVVFVDLVMSGMGGLECMKQLRQMETRNGWRQRFVAMSSDEHLKQDALDAGADEFLYKLAHPVREVGIIIKLVDETK 129
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A536WNC6_9PROT (Response regulator transcription factor n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WNC6_9PROT) HSP 1 Score: 57.0 bits (136), Expect = 9.610e-8 Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 19 KPLHVLIVEDYNLSAQYMSQALKLCDCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSA--NEDLRTSAIAAGADKFLHKLD-----HPVRDIV 354 K + V++V+D S Q+ S + C + A SG +A+ A ++ P D++F+D+ M GM G+A S++K + IV M+ +E+ R AIAAGAD FL K D H V D++ Sbjct: 2 KRIRVMVVDD---SLQFASAVGQFLACNGNFEVLASATSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRVGAIAAGADAFLPKDDFAHGFHAVLDLL 120
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A2V7KCU7_9BACT (DNA-binding response regulator n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KCU7_9BACT) HSP 1 Score: 58.5 bits (140), Expect = 9.630e-8 Identity = 39/125 (31.20%), Postives = 69/125 (55.20%), Query Frame = 1 Query: 19 KPLHVLIVEDYNLSAQYMSQAL-KLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSA--NEDLRTSAIAAGADKFLHKLDHPVRDIVAIVNAVKTNK 384 KP+H+L+ +D+ + L + + R + A +GE+A++ AR+ P DVV +DL+M GMGG+ + + ++ I+ +SA ED +AAGA F+ K PV ++ + +V N+ Sbjct: 11 KPIHILLADDHWAVRAGLHALLDRQANLRVVGEAATGEEALKQARALKP-DVVLMDLVMPGMGGLEAMRRIAALHAGTKILVLSAYLQEDRLLDVLAAGASGFVSK-GSPVENLTRAIRSVAQNE 133
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: UPI001BAD0279 (sigma-54 dependent transcriptional regulator n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BAD0279) HSP 1 Score: 59.3 bits (142), Expect = 1.080e-7 Identity = 38/116 (32.76%), Postives = 69/116 (59.48%), Query Frame = 1 Query: 31 VLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRT--SAIAAGADKFLHKLDHPVRDIVAIVNAV 372 VL+V+D + + + + QA+ + ++ AESGE A++ + P DV+ +DL+M G+GG+A + ++S ++ +V ++A + T A+ AGA F K P R +V+I NA+ Sbjct: 5 VLVVDD-DPTQRRLIQAVLEREGFAVAHAESGEAAIDRLVAGAPADVIMLDLIMPGLGGLAALKEMRSRGFNQPVVVLTATGGIDTVVQAMQAGAQDFFVKPASPERILVSIRNAL 119
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: UPI001C5623D1 (sigma-54 dependent transcriptional regulator n=1 Tax=Pseudohoeflea sp. DP4N28-3 TaxID=2860393 RepID=UPI001C5623D1) HSP 1 Score: 59.3 bits (142), Expect = 1.100e-7 Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 22 PLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMA-RSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSANEDLRT--SAIAAGADKFLHKLDHPVRDIVAIVNAVKTN 381 P HVLIV+D + + + + + + +AE GE A+ M RS G FDVV +DL+M G+GGIA + + ++ + + T A+ AGA F K P R ++AI NAV+++ Sbjct: 2 PSHVLIVDDDPVQRRLLKGTCERSGLK-VDLAEDGESAMSMIKRSAGGFDVVVLDLVMPGVGGIAVLEWMAENAPDIPVIVQTGQGGIETVVRAMRAGAHDFAVKPVSPERLLLAIGNAVRSS 123
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A536Z360_9PROT (Response regulator transcription factor (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z360_9PROT) HSP 1 Score: 57.0 bits (136), Expect = 2.420e-7 Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 19 KPLHVLIVEDYNLSAQYMSQALKLCDCRS----IQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAMSA--NEDLRTSAIAAGADKFLHKLD-----HPVRDIV 354 K + V++V+D S Q+ S + C + A SG +A+ A ++ P D++F+D+ M GM G+A S++K + IV M+ +E+ R AIAAGAD FL K D H V D++ Sbjct: 58 KRIRVMVVDD---SLQFASAVGQFLACNDNFEVLASANSGGEALARASTERP-DLMFIDISMPGMNGLAVTSLIKGRNAAPKIVMMTLEDSEEHRIGAIAAGADAFLPKDDFAHGFHAVLDLL 176
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A1M3NB61_9DELT (DNA-binding response regulator n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NB61_9DELT) HSP 1 Score: 57.0 bits (136), Expect = 3.280e-7 Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 1 Query: 7 NDQSKPLHVLIVEDYNLSAQYMSQALKLC-DCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACISVLKSMRWSGYIVAM--SANEDLRTSAIAAGADKFLHK 327 N+Q+ + VLIV+D+ + Q + L+ D + A++GE AVE+AR + P DVV +D+LM G+GG+ + ++ ++V + S+ E+ A+ AGA +L K Sbjct: 2 NEQTSVVKVLIVDDHTIVRQGLRALLETQPDFTIVAEADTGEAAVELARDERP-DVVLMDVLMPGIGGVEATRRINAVHPQAHVVILTSSSEEEHVVPALRAGALSYLSK 110
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Match: A0A7C4JZ73_9BACT (Response regulator n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7C4JZ73_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 4.380e-7 Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 1 Query: 31 VLIVEDYNLSAQYMSQALKLC---DCRSIQIAESGEQAVEMARSQGPFDVVFVDLLMKGMGGIACIS-VLKSMRWSGYIVAMSANEDLRT--SAIAAGADKFLHKLDHPVRDIVAI 360 VLIV+D + +S ++ + +GE A+EM P++V+F+D+ M G+GG+A + K + +VA+S N+DL T S + +GA +LHK D + +V I Sbjct: 8 VLIVDDNPTFVKTLSLLVQTVLGNKLSQLDTVSTGEDAIEMVSMNTPYNVIFMDVNMPGIGGVAATKEISKEYYRATRVVAVSFNKDLETMKSMLFSGATYYLHKDDLTLEKLVEI 123 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161888 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1519 ID=mRNA_1519|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_18:1311969..1312358- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACAACGATCAATCAAAGCCGCTGCATGTCTTGATTGTGGAAGACTAback to top protein sequence of jgi.p|Trimin1|161888 >Trimin1|161888|e_gw1.18.76.1 ID=Trimin1|161888|e_gw1.18.76.1|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=130bp MNNDQSKPLHVLIVEDYNLSAQYMSQALKLCDCRSIQIAESGEQAVEMARback to top mRNA from alignment at Contig_18:1311969..1312358- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1519 ID=mRNA_1519|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=390bp|location=Sequence derived from alignment at Contig_18:1311969..1312358- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:1311969..1312358- >mRNA_1519 ID=mRNA_1519|Name=jgi.p|Trimin1|161888|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=390bp|location=Sequence derived from alignment at Contig_18:1311969..1312358- (Tribonema minus UTEX_B_3156 )back to top |