mRNA_1409 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161773
Unique NamemRNA_1409
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A835Z842_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z842_9STRA)

HSP 1 Score: 573 bits (1478), Expect = 7.100e-207
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1
Query:    1 MLLKTARTAANHAKPVEIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 852
            MLLKTARTAANHAKPVEIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK
Sbjct:    1 MLLKTARTAANHAKPVEIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 284          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A835YYL4_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL4_9STRA)

HSP 1 Score: 498 bits (1283), Expect = 5.010e-177
Identity = 243/259 (93.82%), Postives = 250/259 (96.53%), Query Frame = 1
Query:   76 LRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 852
            +++   + RKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEG PA DDSGCVLRDVCKAIKKYHVPDER+EPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESD VAQTGVVPMPQEGEQCLGGHAVDVVGYDD TRTFTLMNSWSTQWGDSGFFTLPYEYVLD +LASDFWTF+LFK
Sbjct:   34 IKSTTFSSRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGTPAFDDSGCVLRDVCKAIKKYHVPDERYEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDKVAQTGVVPMPQEGEQCLGGHAVDVVGYDDVTRTFTLMNSWSTQWGDSGFFTLPYEYVLDPSLASDFWTFQLFK 292          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A836CBQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ3_9STRA)

HSP 1 Score: 394 bits (1013), Expect = 1.290e-135
Identity = 191/253 (75.49%), Postives = 216/253 (85.38%), Query Frame = 1
Query:   94 TGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 852
            TGRK+ L+ Q  D RD+VF+S +  A +P +VDLR +GFMPPVLDQ  AGTCSAHASANALHYLL+REKVADFSPARLYIYYTTRVYVEG PA++DSGCVLRDV KAIK YHVPDE++EPYSD+KIS+RPSAMAVANARLH TL+Y AV QTE  LK ALAA +PVMIGIQV+ESFESD VA TG VPMP++GE+CLG HA   +G+DDATR F LMNSW   +GD GFFTLPYEYVLD NLASDFWTFK+FK
Sbjct:   60 TGRKYTLRLQEPDSRDLVFTSTINGADMPLSVDLRTSGFMPPVLDQQSAGTCSAHASANALHYLLKREKVADFSPARLYIYYTTRVYVEGTPATEDSGCVLRDVGKAIKTYHVPDEKYEPYSDKKISQRPSAMAVANARLHTTLKYRAVAQTEHDLKGALAAGFPVMIGIQVYESFESDEVAATGEVPMPEDGEECLGAHATLCIGFDDATRKFKLMNSWGVAFGDKGFFTLPYEYVLDPNLASDFWTFKVFK 312          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A836CN22_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN22_9STRA)

HSP 1 Score: 324 bits (831), Expect = 2.930e-108
Identity = 159/268 (59.33%), Postives = 205/268 (76.49%), Query Frame = 1
Query:   49 EIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 852
            E+ + D   + TG   G+++ L +Q  D RD  F S  K +++P AVDLR TGF+PP +DQGQAGTCSAHA+++AL +L+R+EK+ DF P+RL+IY+T+RVYVEG+  S+D+GC LRDV KA+  YHV +ER+ PYSD KI+E P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++GIQV+ESFESD VA+TG VPMP +GEQCLGGHAV  VG+ D T+TFTL+NSW  QWG +GFFTLPY+Y+ + +LA DFW    FK
Sbjct:   30 ELEKRDNLPVSTG---GKRYGLVKQKPDDRDFQFVSAAK-SSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWG-QWGQNGFFTLPYDYLTNPDLAFDFWMITGFK 292          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A836CNX1_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNX1_9STRA)

HSP 1 Score: 318 bits (814), Expect = 1.110e-105
Identity = 161/274 (58.76%), Postives = 203/274 (74.09%), Query Frame = 1
Query:   31 NHAKPVEIAEDDAPALRTG---PLT--GRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWT 837
            N A+  +  E  A  L+ G   P++  GR++ L +Q  D RD  F +  +  +LP AVDLR TG +PPVLDQG AGTCSAHA+A+AL +LLR+EK+ DF P+RL++YY TRVYVEG+  S+DSGC LRDV KAI  YHV +ER+  Y   KI+E+P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++G QV+ESFES+ VA+TG VPMP EGEQCLGGHA  ++GY+DAT+TFTL+NSW   WG +GFFTLPY Y+ D+ LA DFWT
Sbjct:   16 NAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASR-KSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGL-WGQNGFFTLPYAYLTDTELACDFWT 287          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A836CEQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ3_9STRA)

HSP 1 Score: 314 bits (804), Expect = 1.160e-104
Identity = 150/244 (61.48%), Postives = 191/244 (78.28%), Query Frame = 1
Query:  103 KFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFW 834
            ++ L +Q  D RD  F +  +  +LP AVDLR TG++PPV+DQG AGTCSAHA+A+AL +LLR+EK+ DF P+RL++YY TRVYVEG+  S+DSGC LRDV KAI  YHV +ER+  Y D KI+E+P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++GIQV++SFE++ VA+TGVVPMP EGEQCLGGHAV +V ++DATRTFTL NSWS+ WG  GFF L Y+Y+ + +LA DFW
Sbjct:   10 RYGLVKQKPDDRDYQFVAASR-KSLPAAVDLRTTGYVPPVMDQGSAGTCSAHATASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMEYDDTKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVVVGIQVYDSFETEEVARTGVVPMPAEGEQCLGGHAVYLVAFEDATRTFTLCNSWSSAWGQGGFFKLSYDYLTNPDLACDFW 252          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A835ZGP7_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP7_9STRA)

HSP 1 Score: 308 bits (789), Expect = 3.930e-103
Identity = 143/208 (68.75%), Postives = 168/208 (80.77%), Query Frame = 1
Query:  229 QGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK 852
            QG+AGTCSAHA+AN LHYLLR+E VADF P+RL+IYYT RVYVEG PA++DSGCVLRDVCKA+ +YH PDE++EPYSD +I++RPSA+AVANAR H  L+Y AVPQTE  LK ALAA YPVM+GIQV+  FESD VA+TG   +P   E CLGGHAV +  YDD+ R FTLMNSWS+ WG  GFFTLPY+Y+LD  LA DFW F  FK
Sbjct:    1 QGRAGTCSAHAAANCLHYLLRKEGVADFPPSRLFIYYTARVYVEGTPATEDSGCVLRDVCKAVARYHAPDEKYEPYSDARIAQRPSALAVANARKHCALQYRAVPQTEADLKGALAAGYPVMVGIQVYAGFESDEVARTGEAQLPGPDEACLGGHAVVLTAYDDSLRRFTLMNSWSSAWGRGGFFTLPYDYLLDPQLAGDFWCFTAFK 208          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A836CMZ0_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ0_9STRA)

HSP 1 Score: 311 bits (796), Expect = 6.000e-103
Identity = 152/267 (56.93%), Postives = 194/267 (72.66%), Query Frame = 1
Query:   49 EIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLF 849
            E  +   PA       GR++   +Q  D RD  F ++ +  ++P  VDLR+TGF+ PVL+QG AGTCSAHA+A AL YLLR+E V DF P+RL++YYTTRV +EGI    DSGCVLRDVC+A++K+H  +ER+  YSD +I+ERP A+AVANARLH T  Y AV QT  AL+ ALA  YPV++GIQV+++FES+ VA TGVVPMP   E+CLGGHAV +V YDD TRTFTL NSW  +WG  GFF+LPY+Y++D+ LA DFW    F
Sbjct:   27 EAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFR-NSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWG-EWGQDGFFSLPYDYLIDTGLAGDFWCLTRF 291          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A2V8R499_9BACT (Peptidase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8R499_9BACT)

HSP 1 Score: 224 bits (572), Expect = 1.580e-69
Identity = 121/243 (49.79%), Postives = 161/243 (66.26%), Query Frame = 1
Query:  130 DRRDIVFSSN-VKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVAD-FSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQK---ISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFK 843
            D RD ++S+  V VA LP +VDLR+    PPV DQGQ G+C+ +A A AL +   ++ +AD F P+RL+IYY  RV +EG   S D+G ++RD  K++ K   P E+  PYSD      +++PSA A A+ R H  + Y+ +PQ +  LK  LA+ YP + GI V+ESFES AVA++G VPMP+  E+ LGGHA+  VGYDD  R F + NSW   WG  G+FTLPYEYVLDSNLA DFWT +
Sbjct:   16 DHRDKMYSAPFVHVAQLPPSVDLRSG--CPPVYDQGQLGSCTGNAIAGALEFDQMKQGLADVFPPSRLFIYYNERV-MEG-SVSQDAGAMIRDGVKSVNKVGAPHEKLWPYSDANPGPFTKKPSAAAFADGRKHPAVVYQRLPQVDIQLKGCLASGYPFVFGISVYESFESSAVAKSGKVPMPKPKEKMLGGHAILAVGYDDTQRRFIIRNSWGPDWGVKGYFTLPYEYVLDSNLADDFWTIR 254          
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Match: A0A0M4QQF9_9MICC (Peptidase C1 n=3 Tax=Arthrobacter TaxID=1663 RepID=A0A0M4QQF9_9MICC)

HSP 1 Score: 209 bits (533), Expect = 1.100e-63
Identity = 116/240 (48.33%), Postives = 149/240 (62.08%), Query Frame = 1
Query:  130 DRRDIVFSSNVKV-ATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFS-PARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFK 843
            D+RD  F++ + V A LP AVDL  T   PPV DQGQ G+C+ +  A  + +   +EK+ D S P+RL+IYY  RV +EG  ASD +G  +RD  K +    V DE   PY   K + +P+A   A A+ H  + Y  V QT   +K  LA+ YPV+ G  V++SFES  VA TGVVPMP  GE  LGGH V  VGYDDA+  FT+ NSW T WG  G+ T+PY Y+L S+LASDFWT K
Sbjct:   16 DQRDFHFAAPMAVQANLPPAVDL--TPACPPVYDQGQLGSCTGNGVAGVVQFDALKEKLPDTSTPSRLFIYYNERV-IEGTVASD-AGAQIRDGIKTVATTGVCDETLWPYDITKFANKPAAACYAAAKAHRAITYSRVGQTLTQMKGCLASGYPVVFGFTVYDSFESAQVASTGVVPMPAAGEGVLGGHCVVAVGYDDASSRFTIRNSWGTGWGQGGYATMPYPYLLSSSLASDFWTVK 251          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161773 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z842_9STRA7.100e-207100.00Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835YYL4_9STRA5.010e-17793.82Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CBQ3_9STRA1.290e-13575.49Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CN22_9STRA2.930e-10859.33Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CNX1_9STRA1.110e-10558.76Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CEQ3_9STRA1.160e-10461.48Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835ZGP7_9STRA3.930e-10368.75Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CMZ0_9STRA6.000e-10356.93Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A2V8R499_9BACT1.580e-6949.79Peptidase n=1 Tax=Acidobacteria bacterium TaxID=19... [more]
A0A0M4QQF9_9MICC1.100e-6348.33Peptidase C1 n=3 Tax=Arthrobacter TaxID=1663 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:971017..971871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161773|e_gw1.18.106.1
DescriptionBelongs to the peptidase C1 family
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
Evalue8.43e-62
Seed ortholog44056.XP_009039133.1
Hectar predicted targeting categoryother localisation
TranscriptId162095
TrackFilteredModels1
ProteinId161773
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161773gene_1409Tribonema minus UTEX_B_3156 geneContig_18 971017..971871 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1409_1exon_1409_1Tribonema minus UTEX_B_3156 exonContig_18 971017..971871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1409CDS_1409Tribonema minus UTEX_B_3156 CDSContig_18 971017..971871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161773Trimin1|161773|e_gw1.18.106.1Tribonema minus UTEX_B_3156 polypeptideContig_18 971017..971871 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1409 ID=mRNA_1409|Name=jgi.p|Trimin1|161773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_18:971017..971871- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTGAAGACAGCTCGCACCGCAGCAAATCACGCAAAGCCGGTGGA
AATAGCTGAAGACGACGCACCGGCACTGCGCACTGGCCCGCTGACAGGTC
GAAAGTTTCACTTGAAGCGCCAGAGCTTCGACCGACGGGACATTGTTTTC
AGCAGCAATGTCAAGGTCGCAACATTGCCAGGTGCTGTTGATCTGCGCAA
CACCGGCTTCATGCCACCAGTGCTTGATCAGGGTCAAGCAGGCACATGCA
GCGCACATGCTTCAGCCAATGCACTTCATTACCTACTGAGACGTGAGAAG
GTTGCCGACTTCTCACCTGCACGGCTGTATATATATTACACAACTAGAGT
GTACGTTGAAGGCATACCTGCCTCTGATGACTCTGGGTGCGTGTTGCGCG
ACGTGTGCAAAGCAATCAAGAAGTATCATGTGCCCGATGAGCGTTTTGAA
CCCTACAGTGACCAAAAAATCAGTGAGCGCCCCAGCGCCATGGCTGTGGC
CAACGCGAGGTTGCATGCGACACTCAGGTATGAGGCGGTGCCTCAAACTG
AACAAGCTCTGAAGCGCGCTTTGGCCGCACGTTACCCGGTCATGATCGGC
ATACAGGTTTTTGAGAGCTTTGAGTCTGATGCAGTTGCACAGACTGGCGT
GGTACCAATGCCTCAGGAAGGCGAACAGTGTCTAGGTGGTCATGCGGTGG
ACGTGGTAGGTTATGATGATGCAACACGCACATTTACGCTCATGAACAGT
TGGTCAACGCAGTGGGGTGACAGTGGCTTTTTCACTCTACCTTATGAGTA
TGTTTTGGACTCCAACCTGGCAAGTGACTTTTGGACGTTTAAGTTGTTCA
AGTGA
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protein sequence of jgi.p|Trimin1|161773

>Trimin1|161773|e_gw1.18.106.1 ID=Trimin1|161773|e_gw1.18.106.1|Name=jgi.p|Trimin1|161773|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=285bp
MLLKTARTAANHAKPVEIAEDDAPALRTGPLTGRKFHLKRQSFDRRDIVF
SSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREK
VADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFE
PYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIG
IQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNS
WSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLFK*
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mRNA from alignment at Contig_18:971017..971871-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1409 ID=mRNA_1409|Name=jgi.p|Trimin1|161773|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=855bp|location=Sequence derived from alignment at Contig_18:971017..971871- (Tribonema minus UTEX_B_3156 )
ATGTTGTTGAAGACAGCTCGCACCGCAGCAAATCACGCAAAGCCGGTGGA AATAGCTGAAGACGACGCACCGGCACTGCGCACTGGCCCGCTGACAGGTC GAAAGTTTCACTTGAAGCGCCAGAGCTTCGACCGACGGGACATTGTTTTC AGCAGCAATGTCAAGGTCGCAACATTGCCAGGTGCTGTTGATCTGCGCAA CACCGGCTTCATGCCACCAGTGCTTGATCAGGGTCAAGCAGGCACATGCA GCGCACATGCTTCAGCCAATGCACTTCATTACCTACTGAGACGTGAGAAG GTTGCCGACTTCTCACCTGCACGGCTGTATATATATTACACAACTAGAGT GTACGTTGAAGGCATACCTGCCTCTGATGACTCTGGGTGCGTGTTGCGCG ACGTGTGCAAAGCAATCAAGAAGTATCATGTGCCCGATGAGCGTTTTGAA CCCTACAGTGACCAAAAAATCAGTGAGCGCCCCAGCGCCATGGCTGTGGC CAACGCGAGGTTGCATGCGACACTCAGGTATGAGGCGGTGCCTCAAACTG AACAAGCTCTGAAGCGCGCTTTGGCCGCACGTTACCCGGTCATGATCGGC ATACAGGTTTTTGAGAGCTTTGAGTCTGATGCAGTTGCACAGACTGGCGT GGTACCAATGCCTCAGGAAGGCGAACAGTGTCTAGGTGGTCATGCGGTGG ACGTGGTAGGTTATGATGATGCAACACGCACATTTACGCTCATGAACAGT TGGTCAACGCAGTGGGGTGACAGTGGCTTTTTCACTCTACCTTATGAGTA TGTTTTGGACTCCAACCTGGCAAGTGACTTTTGGACGTTTAAGTTGTTCA AGTGA
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Coding sequence (CDS) from alignment at Contig_18:971017..971871-

>mRNA_1409 ID=mRNA_1409|Name=jgi.p|Trimin1|161773|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=855bp|location=Sequence derived from alignment at Contig_18:971017..971871- (Tribonema minus UTEX_B_3156 )
ATGTTGTTGAAGACAGCTCGCACCGCAGCAAATCACGCAAAGCCGGTGGA
AATAGCTGAAGACGACGCACCGGCACTGCGCACTGGCCCGCTGACAGGTC
GAAAGTTTCACTTGAAGCGCCAGAGCTTCGACCGACGGGACATTGTTTTC
AGCAGCAATGTCAAGGTCGCAACATTGCCAGGTGCTGTTGATCTGCGCAA
CACCGGCTTCATGCCACCAGTGCTTGATCAGGGTCAAGCAGGCACATGCA
GCGCACATGCTTCAGCCAATGCACTTCATTACCTACTGAGACGTGAGAAG
GTTGCCGACTTCTCACCTGCACGGCTGTATATATATTACACAACTAGAGT
GTACGTTGAAGGCATACCTGCCTCTGATGACTCTGGGTGCGTGTTGCGCG
ACGTGTGCAAAGCAATCAAGAAGTATCATGTGCCCGATGAGCGTTTTGAA
CCCTACAGTGACCAAAAAATCAGTGAGCGCCCCAGCGCCATGGCTGTGGC
CAACGCGAGGTTGCATGCGACACTCAGGTATGAGGCGGTGCCTCAAACTG
AACAAGCTCTGAAGCGCGCTTTGGCCGCACGTTACCCGGTCATGATCGGC
ATACAGGTTTTTGAGAGCTTTGAGTCTGATGCAGTTGCACAGACTGGCGT
GGTACCAATGCCTCAGGAAGGCGAACAGTGTCTAGGTGGTCATGCGGTGG
ACGTGGTAGGTTATGATGATGCAACACGCACATTTACGCTCATGAACAGT
TGGTCAACGCAGTGGGGTGACAGTGGCTTTTTCACTCTACCTTATGAGTA
TGTTTTGGACTCCAACCTGGCAAGTGACTTTTGGACGTTTAAGTTGTTCA
AGTGA
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