mRNA_1476 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|161772
Unique NamemRNA_1476
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|161772 vs. uniprot
Match: A0A836CG74_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG74_9STRA)

HSP 1 Score: 429 bits (1103), Expect = 6.680e-152
Identity = 210/217 (96.77%), Postives = 213/217 (98.16%), Query Frame = 1 
Query:    1 MSFSDPNALLVKHMPVYYTACNESEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYTPHSASEHFCISDEADLNIILVDGVRPRVYVSQGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNVPTVRINHLRNRMLCKLR 651
            MSFSDPNALLVKH PVYYTACNE+EEPVNLTTYMRSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFY PHSASEHFC+SDEADLN+ILVDGVRPRVYVS GKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNVPTVRIN LRNRMLCKLR
Sbjct:    1 MSFSDPNALLVKHTPVYYTACNEAEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYMPHSASEHFCVSDEADLNMILVDGVRPRVYVSHGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNVPTVRINLLRNRMLCKLR 217
[Close]
BLAST of jgi.p|Trimin1|161772 vs. uniprot
Match: A0A835ZEL0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEL0_9STRA)

HSP 1 Score: 158 bits (399), Expect = 5.540e-45
Identity = 91/209 (43.54%), Postives = 122/209 (58.37%), Query Frame = 1 
Query:   13 DPNALLVKHMPVYYTACNESEEPVNLTTYMRSALCEKDKTVSGVCQLLPTA---GALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYTPHSASEHFCISDEADLNIILVDGVRPRVYVSQGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGT-FEGIKKRLEPAVLNVPTVRINHLR 627
            D +A +    PVYY    E E PVNL  ++ +     D TVS V    P+A   G  +HYFLFFMRD GMS+FG+N +G H YDIEQ ++++     +  + + PH+  EHF I D  DL +I+ DG  P+VYVS GKH  YPV GTV RYLG  +D C  PVRQ     +L   +     IG  F+GI+ RL     +VPT+R++ +R
Sbjct:    3 DVSAAVRACAPVYYFDHREIESPVNLQKFVMTKAEVPDNTVSAV--FTPSADGDGGFIHYFLFFMRDAGMSVFGVN-LGSHRYDIEQTIVQVNGQGKIVGLQFMPHNVKEHFWIKDTYDLAMIVRDG-HPQVYVSLGKHGCYPVAGTVTRYLGFLSDVCDNPVRQTLEAVILSDAMVKLKYIGAGFQGIRSRLT-VNKSVPTIRLSDVR 206
[Close]
BLAST of jgi.p|Trimin1|161772 vs. uniprot
Match: D7FJZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.750e-30
Identity = 78/210 (37.14%), Postives = 107/210 (50.95%), Query Frame = 1 
Query:   25 LLVKHMPVYYTACNESEEPVNLTTYMRSALCEKDKTVSGVCQLLPTAG-----ALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVKAVFYTPHSASEHFCISDEADLNIILVDGVRPRVYVSQGKHAQYPVPGTVRRYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSI-GTFEGIKKRLEPAVLNVPTVRINHLRNRM 636
            LLVKH P Y+    E+  P++L  Y        DK+    C  + T         L Y  +++ D G++  G  G+G H YD+E V++E+    NV  VFY PHS  EH  I ++ D+  IL +  RPRVYVS GKHA YP+PG V R  G   D C+ P  ++  + +LD   R    I G F G K+R+       P VRI  +  RM
Sbjct:   47 LLVKHFPRYFYDEKETLFPIDLNRYT------VDKSEVDGCNGVATPSKDGENTWLIYMNYYLFDGGVARLG--GLGDHKYDLEIVIVEINRHQNVSGVFYGPHSGHEHMWIRNKDDVKEILDETGRPRVYVSLGKHASYPLPGKVTRLFGFGTDNCENPRPRDRPLFILDHQTRRVDKIDGEFAGPKRRIRRDWSVAPAVRIKDVPRRM 248
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161772 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CG74_9STRA6.680e-15296.77Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835ZEL0_9STRA5.540e-4543.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJZ8_ECTSI1.750e-3037.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:1148081..1148734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|161772|e_gw1.18.285.1
Hectar predicted targeting categoryother localisation
TranscriptId162094
TrackFilteredModels1
ProteinId161772
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161772gene_1476Tribonema minus UTEX_B_3156 geneContig_18 1148081..1148734 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1476_1exon_1476_1Tribonema minus UTEX_B_3156 exonContig_18 1148081..1148734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1476CDS_1476Tribonema minus UTEX_B_3156 CDSContig_18 1148081..1148734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|161772Trimin1|161772|e_gw1.18.285.1Tribonema minus UTEX_B_3156 polypeptideContig_18 1148081..1148734 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1476 ID=mRNA_1476|Name=jgi.p|Trimin1|161772|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=654bp|location=Sequence derived from alignment at Contig_18:1148081..1148734- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTTTCTGACCCAAATGCGCTGCTTGTGAAGCACATGCCTGTTTA
TTATACTGCTTGCAATGAGTCGGAAGAGCCTGTAAATCTGACTACATACA
TGCGCAGTGCCCTGTGCGAGAAAGACAAGACGGTGAGTGGTGTGTGCCAG
TTGCTGCCTACTGCGGGCGCCCTGCTCCACTACTTTCTTTTCTTCATGCG
TGATACCGGCATGAGCATATTTGGCATCAACGGTGTAGGTGGTCATGACT
ATGACATAGAGCAGGTTGTCATTGAGCTCGGTGCAGATGCAAACGTCAAA
GCAGTCTTTTACACGCCTCATAGTGCAAGTGAGCATTTCTGCATTTCAGA
TGAAGCTGACCTGAACATCATTCTGGTGGACGGCGTGCGCCCACGTGTGT
ACGTGTCCCAAGGCAAGCACGCGCAGTACCCTGTACCTGGGACCGTTCGT
CGGTACCTTGGCCTCGCCAATGATACTTGCAAGCTGCCAGTACGGCAGGA
GTTTGGTGTCACAGTGTTGGACAAAGATATCAGAGACAGTGTCAGCATAG
GTACCTTTGAGGGAATCAAGAAAAGATTGGAGCCTGCTGTTCTCAATGTG
CCTACTGTGAGGATCAACCACCTTCGAAATCGAATGCTGTGCAAGCTTCG
GTAG
back to top

protein sequence of jgi.p|Trimin1|161772

>Trimin1|161772|e_gw1.18.285.1 ID=Trimin1|161772|e_gw1.18.285.1|Name=jgi.p|Trimin1|161772|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=218bp
MSFSDPNALLVKHMPVYYTACNESEEPVNLTTYMRSALCEKDKTVSGVCQ
LLPTAGALLHYFLFFMRDTGMSIFGINGVGGHDYDIEQVVIELGADANVK
AVFYTPHSASEHFCISDEADLNIILVDGVRPRVYVSQGKHAQYPVPGTVR
RYLGLANDTCKLPVRQEFGVTVLDKDIRDSVSIGTFEGIKKRLEPAVLNV
PTVRINHLRNRMLCKLR*
back to top

mRNA from alignment at Contig_18:1148081..1148734-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1476 ID=mRNA_1476|Name=jgi.p|Trimin1|161772|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=654bp|location=Sequence derived from alignment at Contig_18:1148081..1148734- (Tribonema minus UTEX_B_3156 )
ATGTCATTTTCTGACCCAAATGCGCTGCTTGTGAAGCACATGCCTGTTTA
TTATACTGCTTGCAATGAGTCGGAAGAGCCTGTAAATCTGACTACATACA
TGCGCAGTGCCCTGTGCGAGAAAGACAAGACGGTGAGTGGTGTGTGCCAG
TTGCTGCCTACTGCGGGCGCCCTGCTCCACTACTTTCTTTTCTTCATGCG
TGATACCGGCATGAGCATATTTGGCATCAACGGTGTAGGTGGTCATGACT
ATGACATAGAGCAGGTTGTCATTGAGCTCGGTGCAGATGCAAACGTCAAA
GCAGTCTTTTACACGCCTCATAGTGCAAGTGAGCATTTCTGCATTTCAGA
TGAAGCTGACCTGAACATCATTCTGGTGGACGGCGTGCGCCCACGTGTGT
ACGTGTCCCAAGGCAAGCACGCGCAGTACCCTGTACCTGGGACCGTTCGT
CGGTACCTTGGCCTCGCCAATGATACTTGCAAGCTGCCAGTACGGCAGGA
GTTTGGTGTCACAGTGTTGGACAAAGATATCAGAGACAGTGTCAGCATAG
GTACCTTTGAGGGAATCAAGAAAAGATTGGAGCCTGCTGTTCTCAATGTG
CCTACTGTGAGGATCAACCACCTTCGAAATCGAATGCTGTGCAAGCTTCG
GTAG
back to top

Coding sequence (CDS) from alignment at Contig_18:1148081..1148734-

>mRNA_1476 ID=mRNA_1476|Name=jgi.p|Trimin1|161772|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=654bp|location=Sequence derived from alignment at Contig_18:1148081..1148734- (Tribonema minus UTEX_B_3156 )
ATGTCATTTTCTGACCCAAATGCGCTGCTTGTGAAGCACATGCCTGTTTA
TTATACTGCTTGCAATGAGTCGGAAGAGCCTGTAAATCTGACTACATACA
TGCGCAGTGCCCTGTGCGAGAAAGACAAGACGGTGAGTGGTGTGTGCCAG
TTGCTGCCTACTGCGGGCGCCCTGCTCCACTACTTTCTTTTCTTCATGCG
TGATACCGGCATGAGCATATTTGGCATCAACGGTGTAGGTGGTCATGACT
ATGACATAGAGCAGGTTGTCATTGAGCTCGGTGCAGATGCAAACGTCAAA
GCAGTCTTTTACACGCCTCATAGTGCAAGTGAGCATTTCTGCATTTCAGA
TGAAGCTGACCTGAACATCATTCTGGTGGACGGCGTGCGCCCACGTGTGT
ACGTGTCCCAAGGCAAGCACGCGCAGTACCCTGTACCTGGGACCGTTCGT
CGGTACCTTGGCCTCGCCAATGATACTTGCAAGCTGCCAGTACGGCAGGA
GTTTGGTGTCACAGTGTTGGACAAAGATATCAGAGACAGTGTCAGCATAG
GTACCTTTGAGGGAATCAAGAAAAGATTGGAGCCTGCTGTTCTCAATGTG
CCTACTGTGAGGATCAACCACCTTCGAAATCGAATGCTGTGCAAGCTTCG
GTAG
back to top