mRNA_1382 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A836CL48_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL48_9STRA) HSP 1 Score: 701 bits (1810), Expect = 3.190e-255 Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 1 Query: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGTATTPQSAARASGIPTLK 1053 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGTATTPQSAARASGIPTLK Sbjct: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGTATTPQSAARASGIPTLK 351
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A836CFT8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT8_9STRA) HSP 1 Score: 616 bits (1588), Expect = 1.340e-221 Identity = 300/338 (88.76%), Postives = 320/338 (94.67%), Query Frame = 1 Query: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGTATTP 1014 MA TAAELFAT+GTGINLGNTLD AQ++RDT VI RRLTALR+KGF+HVRIPVTWQPMGCS RVNSPSFVA+VEGAV AAI LGFTVILNAHHEAWLT+YD S MNAAFADLWRK++LHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRA+SPTRI+LIQPNNLGDAWAARATYRTPSLLPGQGKDKYLA++VHSYGPP+FALP GSNAYFL+MADPEAAVC+HVK LIAELLKLRLALGSTPVHLGEFG+GREN ADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDR+A V+FTFDLAG+VLGT TP Sbjct: 1 MAATAAELFATMGTGINLGNTLDNAQNNRDTEVIARRLTALRQKGFQHVRIPVTWQPMGCSKCRVNSPSFVALVEGAVNAAIALGFTVILNAHHEAWLTSYDGSSGMNAAFADLWRKVALHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAISPTRIVLIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAITVHSYGPPKFALPKGSNAYFLDMADPEAAVCQHVKKLIAELLKLRLALGSTPVHLGEFGVGRENLADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRNANCVDFTFDLAGDVLGTTATP 338
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A836CEX1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEX1_9STRA) HSP 1 Score: 305 bits (782), Expect = 2.920e-98 Identity = 160/339 (47.20%), Postives = 220/339 (64.90%), Query Frame = 1 Query: 13 AAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTM--------CPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGTA 1005 AA+L AT+ +G+NLGNTLDTA HS D +V+ RRL A+R +G+ HVRIPV+W+P + R++ P FV VE AV AI LG VI+NAHHE WLT YD S AM F +WR+I+ F+ PQ+KL+FE+LNEP GTM +P A LTR LNA GY +R+VS R++LIQPN++G + A + TP +LPG G+D+YLAV++HSY P F P+GS++ F + EA + + ++L+ + + + PVH+GEFG+GR N RD+ +V YYR + ARDA IP WDDG DF IT F+RDAT + F + ++ +L +A Sbjct: 10 AAQLLATMKSGLNLGNTLDTATHSTDPAVMARRLDAIRAEGYGHVRIPVSWRPADFAVCRIDVPEFVDKVESAVDHAIGLGLVVIVNAHHEQWLTRYDGSKAMTDEFTSMWRRIATRFRDKPQNKLVFEVLNEPHGTMGGGGGFGGSSQSPEALALTRKLNAAGYTGIRSVSRRRVVLIQPNDMGSMYQAGKMWPTPEMLPGGGRDQYLAVTLHSYAPWAFVGPNGSDSAFASQKSLEADIAQRFESLLRWMQSVPV-----PVHIGEFGVGRVNRWLRDSDMVRAYYRCFSARARDAGIPAAAWDDG--GDFAITKFNRDATSIQFVYGISEALLSSA 341
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A836CFX5_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX5_9STRA) HSP 1 Score: 249 bits (635), Expect = 5.230e-77 Identity = 141/341 (41.35%), Postives = 196/341 (57.48%), Query Frame = 1 Query: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTA-YDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTM----CPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALG--STPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGT 1002 MA TA ++ ++GTGINLG ++ QHSRD I L+A++ KGF HVRIPVTW P ++ P F+ +++ A A++LG TVI+NAHHE WL YD S A N F +LWR+I+ + + Q +++FE+LNEP T A LTR +N GY +RAVS TR++L+QPNN G+ W+ Y + LPG G DKYL + H+Y F L G N ++ ++AD A V K + ++ K A+G + +HLGEFG+GR + RDA IV YY+ +K R+ I T W DG F +T D T V + F LA +VL T Sbjct: 1 MAKTATQVLTSIGTGINLGQVFESKQHSRDADKIRPWLSAVKSKGFGHVRIPVTWYPGTAHVCMLDDPEFMHLLDDATDFAVKLGLTVIINAHHEDWLFQHYDGSAAYNTKFKELWRRIAAKYNAYTQQQVIFEVLNEPTAKFGLGSAAATSACIDLTRKINCAGYAGIRAVSATRVVLVQPNNAGNIWSVPIVYPDKASLPGAGADKYLGIQFHTYDNYNFCLQGGRNDHYKSVADVSADVAKRLTMIV----KWHGAIGKDTVAIHLGEFGVGRLDQRQRDADIVRAYYKLTSKLFREKRICVTAWSDGGW--FALTLTDARQT-VTWPFGLADQVLKT 334
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A835ZM96_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZM96_9STRA) HSP 1 Score: 231 bits (588), Expect = 5.960e-70 Identity = 132/340 (38.82%), Postives = 190/340 (55.88%), Query Frame = 1 Query: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWL-TAYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTM----CPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALG---STPVHLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVL 996 MA TA ++ + +G G+NLG ++ Q+SR + L A++ KGF HVRIPVTW P ++ FV +++ A+ A+++G T+++NAHHE WL YD S NA F LW +I+ +++ Q +LLFE+LNEP G T +LTRT+N GY +R V TRI+L+QPN+ G+ WA Y T + LPG G DK + + H+Y F L G+NA++ ++ D A + K V A L+K +G + +HLGEFG+GR + RDA IV YYR +K RD I T W D F +T D V + F LA ++L Sbjct: 1 MAKTATQILSEIGIGLNLGQVFESKQNSRRPDQVRPWLAAVKAKGFGHVRIPVTWYPSDACV--LDDSEFVHLLDDAIQYAVKIGLTLVINAHHEKWLFDYYDGSDVFNAKFKALWSRIAYKYRAYTQQQLLFEVLNEPDGKFGIGSASTTTGCIELTRTINRVGYEGIRYVDATRIVLVQPNDAGNIWAVPRVYPTKATLPGAGADKSVGIQCHTYDHYNFCLQGGTNAFYKSVDDISADIGKRV----AMLMKWHTDIGGQDTVALHLGEFGVGRLDQRQRDADIVRAYYRITSKLFRDKSICCTAWSDNGW--FALTTMDASRR-VTWPFGLADQIL 331
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A835Z601_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z601_9STRA) HSP 1 Score: 228 bits (580), Expect = 1.030e-68 Identity = 129/337 (38.28%), Postives = 185/337 (54.90%), Query Frame = 1 Query: 13 AAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLT-AYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQ-----LTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPV---HLGEFGIGRENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVL 996 A+++ +G G+NLG T ++ +SR + + L +R+KGF HVRIPVTW P ++N F+ ++ ++ A+++G VILN HHE W+ YD S N F LW +I+ +K PQ+KL+FE+LNEP G +A LTR +N G A+RAV TRI+L+QPN +G+ W+ Y + LPG G DKYL V H+Y +F L +GSN Y+ ++ + A + K V+ + K + +G V HLGEFG+GR + RDA IV YYR + R I T W DG F + + D T V F F LA V+ Sbjct: 6 ASQVLGDIGIGVNLGQTFESKMNSRQPAQVRPWLLGIRQKGFGHVRIPVTWYPGNSHACQLNDALFMQCLDNSIEYAVKIGLAVILNTHHEDWIIDGYDGSDLYNVKFKKLWTQIATRYKRYPQNKLIFEVLNEPSGKFGKPDESADSSECIALTRLINLVGLEAIRAVDSTRIVLVQPNAMGNVWSVPKVYPSKDTLPGSGADKYLGVQFHTYDHYKFCLQAGSNEYYKSLNELRADIQKRVEMI----KKWHVTIGGNDVVALHLGEFGVGRLDQRQRDADIVKAYYRLTSLLYRQKGICVTAWSDGGW--FNVASLDSRGT-VQFPFGLADMVI 335
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A813JL32_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JL32_POLGL) HSP 1 Score: 183 bits (464), Expect = 1.220e-51 Identity = 131/336 (38.99%), Postives = 173/336 (51.49%), Query Frame = 1 Query: 34 LGTGINLGNTLD-TAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLT-AYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTM---------CPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGR--ENFADRDAPIVHLYYRTIAKAARDACIPPTVWDDGTGNDFEITNFDRDATFVNFTFDLAGEVLGT 1002 +G GINLGNT D T +R S I R + +KGFR+VRIPVTW G S N S V AV A++ GF V+LN HHE WL AY+ +P N FA LWR I+ HF + +L+FE+LNEP G + P LTR +N GY AVR+VS TRI+ + PN G Y S LPG G D YL V+VHSY P F N++F ++ ++++ + T A G P H GE+G+GR +N +DRD +V YY+ + + +VWDD F ITN D ++V + LA VL T Sbjct: 1 MGRGINLGNTFDMTGMQNRSKSSIGRMIHLFWKKGFRNVRIPVTW---GDSFNE--SSLLTQGVTEAVKYALDKGFYVVLNTHHERWLKDAYNNTPYYNDRFAALWRGIATHFANA-SCRLVFEILNEPDGALGSFASPDAPSPFNETQINLTRAVNLVGYEAVRSVSNTRIVFVAPNGQGSNALISTIYPNASYLPGAGSDPYLGVTVHSYDPWDFCGQDSRNSHFKSLFAMKSSLTERFNTFS----DWYYATG-VPTHWGEYGLGRRPQNNSDRDTDMVREYYKFVTNSLALHGWASSVWDDQGW--FAITN---DYSYV---YGLADAVLST 317
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: A0A835Z688_9STRA (Family 5 glycoside hydrolase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z688_9STRA) HSP 1 Score: 177 bits (449), Expect = 3.120e-49 Identity = 117/298 (39.26%), Postives = 160/298 (53.69%), Query Frame = 1 Query: 34 LGTGINLGNTLDTAQHSRDTSV-ITRRLTALREKGFRHVRIPVTWQPMG-CSTNRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTA-YDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQGTMCPCTPAAQQLTRTLNATGYNAVRAVSPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIG-RENFADR--DAPIVHLYYRTIAKAARDACIPPTVWDD 909 LG G NLGN D+ +S D + R ++ + KGF HVRIPVTW G C + P FV + AV A+ L VI++ HHE+WL +D S + A F LW IS F + D L+F++LNEP TR +N GY+A+RAV+ TR IL N++G + A+A Y T + LPG GKD LA+SVH+YGPP+FAL GSN F +A+ A++ K A+L K G + EFG+G R++ R D + Y+RT + + P TVW D Sbjct: 9 LGVGFNLGNRFDSRTNSIDFDTSVKRAISDFKAKGFTHVRIPVTWIYKGKCKLK--SDPYFVQQLTKAVKYAVSLKLFVIVDTHHESWLKDHFDGSATLKATFEQLWTDISHLFADISDDALIFQVLNEPPSNFDIAK------TRLVNQWGYDAIRAVTTTRCILCMGNDMGSPFGAKAVYPTAADLPGAGKDARLALSVHTYGPPEFALQDGSNDVFATVAEVTASIDKR----FAQLKKWIARSGHVTMVWDEFGVGARDDDQARRGDLRVREFYHRTANLCSMEKW-PCTVWCD 293
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: UPI001A96A82F (cellulase family glycosylhydrolase n=1 Tax=Pedobacter sp. SYSU D00873 TaxID=2810310 RepID=UPI001A96A82F) HSP 1 Score: 174 bits (441), Expect = 2.230e-46 Identity = 121/340 (35.59%), Postives = 164/340 (48.24%), Query Frame = 1 Query: 4 AVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCST------NRVNSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLT-AYDASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQG-------TMCPCTPAAQQLTRTLNATGYNAVRAV---SPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGREN--FADRDAPIVHLYYRTIAKAARDACIPPTVWDD--------GTGNDFEITNF 942 A+TA +GTG NLGNT D HS D + I + G RH+RIP+TW S N + + +A + V A+ G V++NAHHE WL +YD S N F LW I+ +FK+ DKL+FE+LNEP+G + P A LTR +N GY+A+RA + TR+I+I PN + Y + LPG G D YLA VHSY P F GSN+ + A + T + L + PV+ GEFG GR + + RD+ V YYRT+ + PTVWDD G+G+ + NF Sbjct: 47 AITALTAIDNMGTGFNLGNTFDKPSHSTDPNNIKPIIDLYYNAGMRHMRIPITWMDEFTSRLADANGNLNTNHTRLAQLNSVVDYALGKGMYVVINAHHEHWLKDSYDGSSNYNTKFTTLWTGIANYFKN-KSDKLMFEVLNEPEGKFGQWGTSTLPTNSTAINLTRQINKVGYDAIRATGGNNATRVIMISPNGQANDGQLDDVYPAKAGLPGAGNDLYLAAHVHSYDPWNFCGQEGSNSNYPG----RQAFINDINTTASHAGALGI-----PVNYGEFGAGRVSATVSQRDSWQVREYYRTMRTTMLSHDMAPTVWDDRGWFSLISGSGSSYNFVNF 376
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Match: UPI0019BF7A6A (Cellulase family glycosylhydrolase n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019BF7A6A) HSP 1 Score: 174 bits (440), Expect = 3.760e-46 Identity = 119/329 (36.17%), Postives = 165/329 (50.15%), Query Frame = 1 Query: 1 MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRIPVTWQPMGCSTNRV---------NSPSFVAMVEGAVAAAIELGFTVILNAHHEAWLTAY-DASPAMNAAFADLWRKISLHFKSVPQDKLLFELLNEPQG-----------TMCPCTPAAQQLTRTLNATGYNAVRAV---SPTRIILIQPNNLGDAWAARATYRTPSLLPGQGKDKYLAVSVHSYGPPQFALPSGSNAYFLNMADPEAAVCKHVKTLIAELLKLRLALGSTPVHLGEFGIGRENFA--DRDAPIVHLYYRTIAKAARDACIPPTVWDD 909 +A TAA +GTG NLGNT D AQHS S I + GFR++RIP TW G S N + N P F+ + A + VILN HHE WL Y + + N F +LW IS HFK+ P ++L+FE+LNEP+G T+ P + A LT+ LN GY+A+RA + TRI+++ PN + Y LPG G D YLA+ +H+Y P F GSN+ + + V ++ KL +A VH+GEFG+GR + + +R++ V YYRT+ + I TVWDD Sbjct: 48 IAATAA--MVAMGTGFNLGNTFDLAQHSTVPSTIYPIIDLYYNAGFRNIRIPTTWMD-GFSGNHLASATGTVNFNHPRFIQLKAVIDYALSKPNMYVILNTHHEHWLKRYYNGTATYNTPFTNLWTGISNHFKNYP-NRLVFEVLNEPEGALGDWDNDNGTTVSPNSTTAITLTKQLNQVGYDAIRATGGPNTTRIVMVSPNAQANTSQFEEVYNVKESLPGGGNDDYLAIHLHTYNPWNFCGQKGSNSNY----GGRTGIINGVSAIVTHAAKLAVA-----VHVGEFGVGRVDSSALERNSWQVREYYRTLRRELIAKNIAATVWDD 363 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|161725 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1382 ID=mRNA_1382|Name=jgi.p|Trimin1|161725|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1056bp|location=Sequence derived from alignment at Contig_18:905480..906535- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGCAGTGACTGCAGCAGAACTCTTTGCCACGTTGGGCACCGGAATCAAback to top protein sequence of jgi.p|Trimin1|161725 >Trimin1|161725|e_gw1.18.122.1 ID=Trimin1|161725|e_gw1.18.122.1|Name=jgi.p|Trimin1|161725|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=352bp MAVTAAELFATLGTGINLGNTLDTAQHSRDTSVITRRLTALREKGFRHVRback to top mRNA from alignment at Contig_18:905480..906535- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1382 ID=mRNA_1382|Name=jgi.p|Trimin1|161725|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1056bp|location=Sequence derived from alignment at Contig_18:905480..906535- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:905480..906535- >mRNA_1382 ID=mRNA_1382|Name=jgi.p|Trimin1|161725|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1056bp|location=Sequence derived from alignment at Contig_18:905480..906535- (Tribonema minus UTEX_B_3156 )back to top |